mRNA_M-pyrifera_M_contig10471.1012.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10471.1012.1
Unique NamemRNA_M-pyrifera_M_contig10471.1012.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10471.1012.1 vs. uniprot
Match: D7FUI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI3_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 3.520e-43
Identity = 108/204 (52.94%), Postives = 122/204 (59.80%), Query Frame = 1 
Query:    1 MDDSDDPE--DAEIYASLRRRLEELEK-IPPSRPLPSPTAFPSPRLSPQTAITSFARTNRSPRARE-FTIGDAFKADSGPVSAEDKKRSLAWLTIKSVGVISAALSFGTVALYWLAGEYFVHLGPREYPGS------ASRSAGVERTVEGK-GEGEAAAAP---RRTIGGSTTRDAFSFEGFPDAGRSD---------VVPPDF 543
            MD SDD    DAE+YASLR+RLEELEK +  S P P            Q    + A  N+  R RE FTI           S EDK+RS A LTI+SVGVISAALSFGT+ALYWLAG  FVHLGPREYPGS      AS + G+ER   G+ G G A  AP   RR +GGS+TR+AF FEGFPD G S          VVPPDF
Sbjct:    1 MDPSDDTSEGDAEMYASLRKRLEELEKQVGTSAPAPQE----------QVQEPAVAANNKGAREREWFTIPKE--------SPEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSMSSRGGASTAPGIERIAAGEDGNGGAQQAPQTKRRAMGGSSTREAFQFEGFPDVGGSGGGSGGVGKGVVPPDF 186
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BLAST of mRNA_M-pyrifera_M_contig10471.1012.1 vs. uniprot
Match: A0A6H5KW30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW30_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.270e-38
Identity = 107/206 (51.94%), Postives = 122/206 (59.22%), Query Frame = 1 
Query:    1 MDDSDDPE--DAEIYASLRRRLEELE-KIPPSRPLPSPTAFPSPRLSPQTAITSFARTNRSPRARE-FTIGDAFKADSGPVSA-EDKKRSLAWLTIKSVGVISAALSFGTVALYWLAGEYFVHLGPREYPGSASR------SAGVERTVEGKGE-GEAAAAPR---RTIGGSTTRDAFSFEGFPDAG----------RSDVVPPDF 543
            MD SDD    DAE+YASLR+RLEELE ++  S P         P      A+T+    NR  R RE FTI         P  A EDK+RSLA LTI+SVGVISAALSFGT+ALYWLAG  FVHLGPREYPGS S       + G ER V G+ E G A   P+   R +GGS+TR+AF FEGFPD G             VVPPDF
Sbjct:   77 MDPSDDTSEGDAEMYASLRKRLEELENRVETSAPAAQEEQGQEP------AVTA---NNRGAREREWFTI---------PKEAPEDKRRSLALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRGSAGTAPGFERIVVGEDENGGAQQVPQTQGRAMGGSSTREAFQFEGFPDVGGGGSXXXXXXXKGVVPPDF 264
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10471.1012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUI3_ECTSI3.520e-4352.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW30_9PHAE1.270e-3851.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10471contigM-pyrifera_M_contig10471:4356..6730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_003820.1
Exons2
Model size546
Cds size546
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.9236295-CDS-M-pyrifera_M_contig10471:4355..44311622815554.9236295-CDS-M-pyrifera_M_contig10471:4355..4431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10471 4356..4431 +
1692277461.659586-CDS-M-pyrifera_M_contig10471:4355..44311692277461.659586-CDS-M-pyrifera_M_contig10471:4355..4431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10471 4356..4431 +
1622815554.935614-CDS-M-pyrifera_M_contig10471:6260..67301622815554.935614-CDS-M-pyrifera_M_contig10471:6260..6730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10471 6261..6730 +
1692277461.671012-CDS-M-pyrifera_M_contig10471:6260..67301692277461.671012-CDS-M-pyrifera_M_contig10471:6260..6730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10471 6261..6730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10471.1012.1prot_M-pyrifera_M_contig10471.1012.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10471 4356..6730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10471.1012.1

>prot_M-pyrifera_M_contig10471.1012.1 ID=prot_M-pyrifera_M_contig10471.1012.1|Name=mRNA_M-pyrifera_M_contig10471.1012.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
MDDSDDPEDAEIYASLRRRLEELEKIPPSRPLPSPTAFPSPRLSPQTAIT
SFARTNRSPRAREFTIGDAFKADSGPVSAEDKKRSLAWLTIKSVGVISAA
LSFGTVALYWLAGEYFVHLGPREYPGSASRSAGVERTVEGKGEGEAAAAP
RRTIGGSTTRDAFSFEGFPDAGRSDVVPPDF*
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mRNA from alignment at M-pyrifera_M_contig10471:4356..6730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10471.1012.1 ID=mRNA_M-pyrifera_M_contig10471.1012.1|Name=mRNA_M-pyrifera_M_contig10471.1012.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2375bp|location=Sequence derived from alignment at M-pyrifera_M_contig10471:4356..6730+ (Macrocystis pyrifera P11B4 male)
ATGGATGACTCGGATGATCCTGAGGACGCCGAGATATACGCTTCGCTCCG
GAGGCGGCTGGAGGAGCTCGAGAAAAGTGCGCCCGTCGACTCTGGAAATG
GAGTTCAACCTGCCTCAACAATGGCGGAAACGTGCGTCCCTCTTGAAATC
TGATTGCGTTGGCACCGATGTTCAAGGAAGAGAACAAGAAACATGAGCAA
GATCAGCAGCGTACAGCAGTATGAATTTTGCGAGAGACTAGGATCATGTC
GGTGTCATATGTGTTGCAAGGATGCATTGCTAGAGGCACCGGGCGGCGGT
ATTTGATGGCAGTGCAAGCAATGCAAGCATGCAAGCACACTTTTTCAGTT
TTTTTTTCAAACGAAAAAGAGATGCGGCGTAAACCTGCGAACGCACAGTC
CCATTAATCCAACAATTGATGGCACATTTCCGTCTAATACACATGTTCCT
ACTCTACAGCCACAAGAAACAACCACGCAGCCACAGCAACAGGAATGCAG
AGCGTGAGAGTGTTGCGTCTTGAAGGCAGAGCTGCAGCAGCAGTAATAGC
GAGCCCACGCCTGTATAGCGTAGTATGCGTTCATGGTTCCGTGGTGTCGA
ACTGCAGCTCCAATCCAAGAACAACCGCTGTATCAGGGCCTACTTACTAT
TCATACGATTCACCTGGTCTACAAAGGCGTCAGCCTCATGAAATCGAATT
CTACTGCGAACGGCGCACAGCCGCCACAGCGAAGAGGAGGGCCACCCGAG
GGCAGATAGTTTGCGGCACATAAGCCAGCTCACCAAGGCCCGTGTGGGCG
AGGCCTTGTCGACGCGAGGCCGCGCCGCAAAGGCCGGCATAGGCATGCGA
CCACATGCGGCGGAGAGTTGGCATGGTGCAGCTGCATCATCGATGACAAC
TCTGTGTGCTTTGTCGGCTGCTGCTGACGCTGCCGATCTGTGTGCTGTTT
GCTTTTGTTGCAGAGCGGTCAGCGAGTCTCTCGGGCGTGTGACCGCGCAA
CACGGCATACCGCACACCGCACAGCACGCCCCACGCACGCACTGCACAGC
GCACCCAGTTGCCGTCGATTGACACCCTTCGCATGACCGCGGTAAAGCAT
ACACACACGCAGCAGCAGCAGCAGCAGCACTGCAGCAGCAGCACGGCAGC
AGCAGCACAGCAGCAGCAGCAGCAGCACAGCAGCAGCAGCAGCATCTCGC
ATCGAAGCCGTTGGCATTCCATTTTCCGTATTTTCGTTTCGTCAGTTGTT
GCTGTTCACAAATTCCCCCTAAAAATATTTCCACTTCAAAACGGAATCTA
CGGAGTTGGGTTCTCGCAAGCAGCTTCAAACCCGATTATGTTTCGATAAT
CTGAATGGCCTGTGGACGCAAACCAAACCACAATAGGATCTTACGCAGAC
ACCCTACTTTAAGGTATTTTTTTGTTTTGTTTTTTTATCGAATATTTGGA
GGCACGCACCACGACTGCTACGCGTTACCTGGGCCAACGTAGAACGCAGT
ATCTGGTGTGATGATGTGCCATTCGTACCATCTCTTACGACGGTCTACTG
TAATCCGCATCCACTCGTAGATCTCCTGTACTCGTATACCTGGTGTAGAT
TGCGGTAAGTTTTTGTGTTCCGTGCGGGTGTGCAGATGTTGCGGCAGTGC
ATGGCCCTGAGTGTTTCTAGAACTGCGTCACGACCGAAAAACAGAAGGAA
TCATCGTTATCCAATACGCTTGCGCAGTGGTTGGTATCGTACGAGTGGAT
CTTCGAAACGTTTCCGATGCACTCTGTACCATGCAAAAACATGTTCGCTT
ATATGTCTGTTCCACCACCGCTGTTCATCAAGCCAGACTACTCGAGGACC
CAACTAGGAATAGACGCCCCCCCCCCCATACGACCGAGGCCATCCATGAC
ATGAGTACCCCCCTCCCGTCCCCTCCCCTCCCCTACCGCCTTCCCTTCTC
CCCGCCTCTCCCCGCAAACCGCAATAACGTCGTTTGCACGAACCAATCGC
AGCCCGCGGGCTAGGGAGTTCACGATAGGGGACGCCTTCAAGGCCGACAG
CGGTCCGGTCTCGGCGGAAGACAAGAAACGCTCCCTCGCGTGGCTGACCA
TCAAGAGCGTGGGCGTCATCTCCGCCGCCCTTTCTTTTGGGACCGTCGCG
CTCTACTGGTTGGCCGGCGAGTACTTCGTGCACTTGGGTCCACGCGAGTA
CCCCGGTTCGGCGTCGCGAAGCGCGGGCGTCGAGCGGACGGTGGAGGGGA
AGGGGGAAGGCGAGGCGGCGGCGGCGCCCCGACGTACAATCGGAGGCAGC
ACGACGAGGGACGCGTTTAGCTTTGAAGGCTTTCCGGACGCGGGGAGAAG
CGATGTCGTCCCCCCAGACTTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10471:4356..6730+

>mRNA_M-pyrifera_M_contig10471.1012.1 ID=mRNA_M-pyrifera_M_contig10471.1012.1|Name=mRNA_M-pyrifera_M_contig10471.1012.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig10471:4356..6730+ (Macrocystis pyrifera P11B4 male)
ATGGATGACTCGGATGATCCTGAGGACGCCGAGATATACGCTTCGCTCCG
GAGGCGGCTGGAGGAGCTCGAGAAAAATGGATGACTCGGATGATCCTGAG
GACGCCGAGATATACGCTTCGCTCCGGAGGCGGCTGGAGGAGCTCGAGAA
AATACCCCCCTCCCGTCCCCTCCCCTCCCCTACCGCCTTCCCTTCTCCCC
GCCTCTCCCCGCAAACCGCAATAACGTCGTTTGCACGAACCAATCGCAGC
CCGCGGGCTAGGGAGTTCACGATAGGGGACGCCTTCAAGGCCGACAGCGG
TCCGGTCTCGGCGGAAGACAAGAAACGCTCCCTCGCGTGGCTGACCATCA
AGAGCGTGGGCGTCATCTCCGCCGCCCTTTCTTTTGGGACCGTCGCGCTC
TACTGGTTGGCCGGCGAGTACTTCGTGCACTTGGGTCCACGCGAGTACCC
CGGTTCGGCGTCGCGAAGCGCGGGCGTCGAGCGGACGGTGGAGGGGAAGG
GGGAAGGCGAGGCGGCGGCGGCGCCCCGACGTACAATCGGAGGCAGCACG
ACGAGGGACGCGTTTAGCTTTGAAGGCTTTCCGGACGCGGGGAGAAGCGA
TGTCGTCCCCCCAGACTTTTGATACCCCCCTCCCGTCCCCTCCCCTCCCC
TACCGCCTTCCCTTCTCCCCGCCTCTCCCCGCAAACCGCAATAACGTCGT
TTGCACGAACCAATCGCAGCCCGCGGGCTAGGGAGTTCACGATAGGGGAC
GCCTTCAAGGCCGACAGCGGTCCGGTCTCGGCGGAAGACAAGAAACGCTC
CCTCGCGTGGCTGACCATCAAGAGCGTGGGCGTCATCTCCGCCGCCCTTT
CTTTTGGGACCGTCGCGCTCTACTGGTTGGCCGGCGAGTACTTCGTGCAC
TTGGGTCCACGCGAGTACCCCGGTTCGGCGTCGCGAAGCGCGGGCGTCGA
GCGGACGGTGGAGGGGAAGGGGGAAGGCGAGGCGGCGGCGGCGCCCCGAC
GTACAATCGGAGGCAGCACGACGAGGGACGCGTTTAGCTTTGAAGGCTTT
CCGGACGCGGGGAGAAGCGATGTCGTCCCCCCAGACTTTTGA
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