mRNA_M-pyrifera_M_contig104707.1011.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104707.1011.1
Unique NamemRNA_M-pyrifera_M_contig104707.1011.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104707.1011.1 vs. uniprot
Match: A0A3D4UFN8_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UFN8_9BACT)

HSP 1 Score: 152 bits (383), Expect = 1.660e-43
Identity = 77/154 (50.00%), Postives = 102/154 (66.23%), Query Frame = 1 
Query:    1 VGAVIFAVGCGSGLLVGWFAGMANSFSDMLSDMDFD-AKVIVEAAAPDVVIADEPFSVTVTVTDTSGIDRILHEIDFMGTLADNAQFANIHPVPTSIVPYPGYKEFYFEEPLQANQSAQFSFEITPAQAGIYNADITVYMEDFNSESTEISITV 459
            +GA+IFAVGCGSGLLVGWF G A+ F+D + DM F+ A + +   AP      +P +VT+TV+D +   R + +ID+ GT+ DN  F  I+PVP    P   Y+E  FE PL A+QS  F+F +TP Q G YNA ITVY++D+NSE TEI I V
Sbjct:   35 IGALIFAVGCGSGLLVGWFGGAASGFADAIPDMTFEPANITITTDAPQTAAVGQPITVTLTVSDINSTQRTIRDIDWSGTIVDNMDFGTINPVPQEQNPDGDYREIVFETPLGADQSQDFTFILTPRQVGTYNAAITVYVDDYNSERTEILIDV 188
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104707.1011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D4UFN8_9BACT1.660e-4350.00Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104707contigM-pyrifera_M_contig104707:2..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.8829615-CDS-M-pyrifera_M_contig104707:1..4721622815554.8829615-CDS-M-pyrifera_M_contig104707:1..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104707 2..472 +
1692277461.6486466-CDS-M-pyrifera_M_contig104707:1..4721692277461.6486466-CDS-M-pyrifera_M_contig104707:1..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104707 2..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104707.1011.1prot_M-pyrifera_M_contig104707.1011.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104707 2..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104707.1011.1

>prot_M-pyrifera_M_contig104707.1011.1 ID=prot_M-pyrifera_M_contig104707.1011.1|Name=mRNA_M-pyrifera_M_contig104707.1011.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
VGAVIFAVGCGSGLLVGWFAGMANSFSDMLSDMDFDAKVIVEAAAPDVVI
ADEPFSVTVTVTDTSGIDRILHEIDFMGTLADNAQFANIHPVPTSIVPYP
GYKEFYFEEPLQANQSAQFSFEITPAQAGIYNADITVYMEDFNSESTEIS
ITVAPN*
back to top

mRNA from alignment at M-pyrifera_M_contig104707:2..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104707.1011.1 ID=mRNA_M-pyrifera_M_contig104707.1011.1|Name=mRNA_M-pyrifera_M_contig104707.1011.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig104707:2..472+ (Macrocystis pyrifera P11B4 male)
GTCGGCGCAGTAATCTTCGCCGTCGGCTGCGGCTCAGGACTCCTCGTCGG
CTGGTTCGCCGGCATGGCAAACAGCTTCAGCGATATGCTGAGCGACATGG
ATTTCGATGCGAAAGTAATCGTTGAAGCAGCTGCGCCCGATGTCGTCATC
GCTGATGAACCGTTCTCTGTCACCGTAACAGTCACAGACACTTCCGGCAT
AGACAGGATCCTCCACGAAATCGACTTCATGGGGACCCTTGCCGACAACG
CGCAGTTCGCGAACATCCACCCAGTGCCGACCTCGATTGTTCCCTATCCA
GGATACAAGGAGTTCTACTTCGAAGAACCCCTTCAAGCAAATCAGAGCGC
CCAGTTCTCATTCGAGATCACCCCCGCGCAAGCCGGGATCTACAACGCCG
ACATCACAGTCTACATGGAAGACTTCAATAGTGAATCTACAGAGATCAGC
ATCACCGTCGCACCGAACTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104707:2..472+

>mRNA_M-pyrifera_M_contig104707.1011.1 ID=mRNA_M-pyrifera_M_contig104707.1011.1|Name=mRNA_M-pyrifera_M_contig104707.1011.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig104707:2..472+ (Macrocystis pyrifera P11B4 male)
GTCGGCGCAGTAATCTTCGCCGTCGGCTGCGGCTCAGGACTCCTCGTCGG
CTGGTTCGCCGGCATGGCAAACAGCTTCAGCGATATGCTGAGCGACATGG
ATTTCGATGCGAAAGTAATCGTTGAAGCAGCTGCGCCCGATGTCGTCATC
GCTGATGAACCGTTCTCTGTCACCGTAACAGTCACAGACACTTCCGGCAT
AGACAGGATCCTCCACGAAATCGACTTCATGGGGACCCTTGCCGACAACG
CGCAGTTCGCGAACATCCACCCAGTGCCGACCTCGATTGTTCCCTATCCA
GGATACAAGGAGTTCTACTTCGAAGAACCCCTTCAAGCAAATCAGAGCGC
CCAGTTCTCATTCGAGATCACCCCCGCGCAAGCCGGGATCTACAACGCCG
ACATCACAGTCTACATGGAAGACTTCAATAGTGAATCTACAGAGATCAGC
ATCACCGTCGCACCGAACTAAGTCGGCGCAGTAATCTTCGCCGTCGGCTG
CGGCTCAGGACTCCTCGTCGGCTGGTTCGCCGGCATGGCAAACAGCTTCA
GCGATATGCTGAGCGACATGGATTTCGATGCGAAAGTAATCGTTGAAGCA
GCTGCGCCCGATGTCGTCATCGCTGATGAACCGTTCTCTGTCACCGTAAC
AGTCACAGACACTTCCGGCATAGACAGGATCCTCCACGAAATCGACTTCA
TGGGGACCCTTGCCGACAACGCGCAGTTCGCGAACATCCACCCAGTGCCG
ACCTCGATTGTTCCCTATCCAGGATACAAGGAGTTCTACTTCGAAGAACC
CCTTCAAGCAAATCAGAGCGCCCAGTTCTCATTCGAGATCACCCCCGCGC
AAGCCGGGATCTACAACGCCGACATCACAGTCTACATGGAAGACTTCAAT
AGTGAATCTACAGAGATCAGCATCACCGTCGCACCGAACTAA
back to top