mRNA_M-pyrifera_M_contig104701.1010.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104701.1010.1
Unique NamemRNA_M-pyrifera_M_contig104701.1010.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104701.1010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104701contigM-pyrifera_M_contig104701:313..642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.8314128-CDS-M-pyrifera_M_contig104701:312..6211622815554.8314128-CDS-M-pyrifera_M_contig104701:312..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104701 313..621 -
1692277461.6301026-CDS-M-pyrifera_M_contig104701:312..6211692277461.6301026-CDS-M-pyrifera_M_contig104701:312..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104701 313..621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.848753-UTR-M-pyrifera_M_contig104701:621..6421622815554.848753-UTR-M-pyrifera_M_contig104701:621..642Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104701 622..642 -
1692277461.639597-UTR-M-pyrifera_M_contig104701:621..6421692277461.639597-UTR-M-pyrifera_M_contig104701:621..642Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104701 622..642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104701.1010.1prot_M-pyrifera_M_contig104701.1010.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104701 313..621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104701.1010.1

>prot_M-pyrifera_M_contig104701.1010.1 ID=prot_M-pyrifera_M_contig104701.1010.1|Name=mRNA_M-pyrifera_M_contig104701.1010.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MIKWPLNERFDVYAKLGATLNFKGTAANQTARTIPVTGGVLPLPDNDARL
YRAIYGVGVTYDVNPTFSVDVGWSRIDGQGSWKATDFGFIGIVYHFDQFL
TA*
back to top

mRNA from alignment at M-pyrifera_M_contig104701:313..642-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104701.1010.1 ID=mRNA_M-pyrifera_M_contig104701.1010.1|Name=mRNA_M-pyrifera_M_contig104701.1010.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig104701:313..642- (Macrocystis pyrifera P11B4 male)
CAAAGTTATGACCTCGTTGGTATGATTAAATGGCCATTAAATGAAAGATT
TGATGTTTATGCGAAACTGGGTGCCACATTAAATTTTAAAGGCACTGCAG
CTAATCAGACGGCGAGAACCATTCCTGTTACAGGTGGCGTTTTACCGCTT
CCTGATAATGATGCTAGGCTTTACCGTGCAATTTATGGTGTAGGTGTGAC
CTATGACGTCAATCCAACCTTTTCAGTTGATGTGGGTTGGTCACGTATAG
ATGGTCAAGGTAGTTGGAAAGCGACTGACTTTGGGTTCATTGGTATTGTG
TACCATTTTGATCAATTCCTAACCGCTTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104701:313..642-

>mRNA_M-pyrifera_M_contig104701.1010.1 ID=mRNA_M-pyrifera_M_contig104701.1010.1|Name=mRNA_M-pyrifera_M_contig104701.1010.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig104701:313..642- (Macrocystis pyrifera P11B4 male)
ATGATTAAATGGCCATTAAATGAAAGATTTGATGTTTATGCGAAACTGGG
TGCCACATTAAATTTTAAAGGCACTGCAGCTAATCAGACGGCGAGAACCA
TTCCTGTTACAGGTGGCGTTTTACCGCTTCCTGATAATGATGCTAGGCTT
TACCGTGCAATTTATGGTGTAGGTGTGACCTATGACGTCAATCCAACCTT
TTCAGTTGATGTGGGTTGGTCACGTATAGATGGTCAAGGTAGTTGGAAAG
CGACTGACTTTGGGTTCATTGGTATTGTGTACCATTTTGATCAATTCCTA
ACCGCTTAAATGATTAAATGGCCATTAAATGAAAGATTTGATGTTTATGC
GAAACTGGGTGCCACATTAAATTTTAAAGGCACTGCAGCTAATCAGACGG
CGAGAACCATTCCTGTTACAGGTGGCGTTTTACCGCTTCCTGATAATGAT
GCTAGGCTTTACCGTGCAATTTATGGTGTAGGTGTGACCTATGACGTCAA
TCCAACCTTTTCAGTTGATGTGGGTTGGTCACGTATAGATGGTCAAGGTA
GTTGGAAAGCGACTGACTTTGGGTTCATTGGTATTGTGTACCATTTTGAT
CAATTCCTAACCGCTTAA
back to top