mRNA_M-pyrifera_M_contig104700.1009.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104700.1009.1
Unique NamemRNA_M-pyrifera_M_contig104700.1009.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104700.1009.1 vs. uniprot
Match: A0A8H6M6H0_9AGAR (Ras guanine nucleotide exchange factor domain-containing protein n=3 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6M6H0_9AGAR)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    4 RALAAFAPQHEHCLALEEGDVVEVLSRDASGWWRGCVGDRAGWFPSSYV 150
            RAL  +  Q    L+  +GDV+EVLS+  SGWW G +G+  GWFPS+YV
Sbjct:   48 RALYDYDAQDASALSFRQGDVIEVLSQQPSGWWDGLLGEERGWFPSNYV 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig104700.1009.1 vs. uniprot
Match: A8NRU3_COPC7 (Uncharacterized protein n=1 Tax=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) TaxID=240176 RepID=A8NRU3_COPC7)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    4 RALAAFAPQHEHCLALEEGDVVEVLSRDASGWWRGCVGDRAGWFPSSYV 150
            RAL  +  Q    L+  +GD++EVLS+  SGWW G +G+  GWFPS+YV
Sbjct:   69 RALYNYDAQDSSALSFRQGDIIEVLSQQPSGWWDGLLGEERGWFPSNYV 117
[Close]
BLAST of mRNA_M-pyrifera_M_contig104700.1009.1 vs. uniprot
Match: A0A4V1Q4C5_9AGAR (Uncharacterized protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4V1Q4C5_9AGAR)

HSP 1 Score: 59.3 bits (142), Expect = 5.580e-9
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    4 RALAAFAPQHEHCLALEEGDVVEVLSRDASGWWRGCVGDRAGWFPSSYV 150
            RAL  +  Q    L+  +GD++EVLS+  SGWW G +G+  GWFPS+YV
Sbjct:   41 RALYDYDAQDASALSFRQGDLIEVLSQQPSGWWDGLLGEERGWFPSNYV 89
[Close]
BLAST of mRNA_M-pyrifera_M_contig104700.1009.1 vs. uniprot
Match: A0A5C3KKX6_9AGAR (Ras GEF n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3KKX6_9AGAR)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-8
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    4 RALAAFAPQHEHCLALEEGDVVEVLSRDASGWWRGCVGDRAGWFPSSYV 150
            RAL  +  Q    L+ ++G+++EVLS+  SGWW G +G+  GWFPS+YV
Sbjct:   52 RALYNYDAQDGSALSFKQGEIIEVLSQQPSGWWDGLLGEERGWFPSNYV 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig104700.1009.1 vs. uniprot
Match: A0A4Y7SLV6_9AGAR (Ras GEF n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7SLV6_9AGAR)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-8
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    4 RALAAFAPQHEHCLALEEGDVVEVLSRDASGWWRGCVGDRAGWFPSSYV 150
            +AL  +  Q    L+  +GD++EVL++  SGWW G +G+  GWFPS+YV
Sbjct:   49 KALYDYQAQDNSALSFNQGDIIEVLTQQPSGWWDGLLGEERGWFPSNYV 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig104700.1009.1 vs. uniprot
Match: A0A672IZE1_SALFA (Uncharacterized protein n=2 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672IZE1_SALFA)

HSP 1 Score: 58.2 bits (139), Expect = 1.420e-8
Identity = 22/49 (44.90%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    4 RALAAFAPQHEHCLALEEGDVVEVLSRDASGWWRGCVGDRAGWFPSSYV 150
            +AL +F P+H+  LAL+EGD++ + S++ +GWW G +  + G FPS+YV
Sbjct:  507 KALYSFTPEHDDELALKEGDLLNIYSKEENGWWYGALNGQCGLFPSTYV 555
[Close]
BLAST of mRNA_M-pyrifera_M_contig104700.1009.1 vs. uniprot
Match: F1QL28_DANRE (Vav 3 guanine nucleotide exchange factor a (Fragment) n=1 Tax=Danio rerio TaxID=7955 RepID=F1QL28_DANRE)

HSP 1 Score: 56.2 bits (134), Expect = 2.070e-8
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   19 FAPQHEHCLALEEGDVVEVLSRD-ASGWWRGCVGDRAGWFPSSYV 150
            F+P+    L+++EGDVV + S+  ASGWW+G V  R GWFPS+YV
Sbjct:  119 FSPRDTRELSMQEGDVVRIYSKTGASGWWKGEVNGRVGWFPSTYV 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig104700.1009.1 vs. uniprot
Match: A0A669D6B2_ORENI (Vav 3 guanine nucleotide exchange factor b n=2 Tax=Oreochromis niloticus TaxID=8128 RepID=A0A669D6B2_ORENI)

HSP 1 Score: 57.4 bits (137), Expect = 2.660e-8
Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   43 LALEEGDVVEVLSRDASGWWRGCVGDRAGWFPSSYV 150
            L+L++GDV+ + ++  +GWW+G VGDR GWFPS+YV
Sbjct:  740 LSLQQGDVITIYTKMPNGWWKGVVGDRVGWFPSTYV 775
[Close]
BLAST of mRNA_M-pyrifera_M_contig104700.1009.1 vs. uniprot
Match: A0A668V2U7_OREAU (Vav 3 guanine nucleotide exchange factor b n=1 Tax=Oreochromis aureus TaxID=47969 RepID=A0A668V2U7_OREAU)

HSP 1 Score: 57.4 bits (137), Expect = 2.660e-8
Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   43 LALEEGDVVEVLSRDASGWWRGCVGDRAGWFPSSYV 150
            L+L++GDV+ + ++  +GWW+G VGDR GWFPS+YV
Sbjct:  746 LSLQQGDVITIYTKMPNGWWKGVVGDRVGWFPSTYV 781
[Close]
BLAST of mRNA_M-pyrifera_M_contig104700.1009.1 vs. uniprot
Match: A0A669BBI1_ORENI (Vav 3 guanine nucleotide exchange factor b n=4 Tax=Oreochromis TaxID=8139 RepID=A0A669BBI1_ORENI)

HSP 1 Score: 57.4 bits (137), Expect = 2.660e-8
Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   43 LALEEGDVVEVLSRDASGWWRGCVGDRAGWFPSSYV 150
            L+L++GDV+ + ++  +GWW+G VGDR GWFPS+YV
Sbjct:  747 LSLQQGDVITIYTKMPNGWWKGVVGDRVGWFPSTYV 782
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104700.1009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H6M6H0_9AGAR2.180e-951.02Ras guanine nucleotide exchange factor domain-cont... [more]
A8NRU3_COPC72.180e-948.98Uncharacterized protein n=1 Tax=Coprinopsis cinere... [more]
A0A4V1Q4C5_9AGAR5.580e-948.98Uncharacterized protein n=1 Tax=Candolleomyces abe... [more]
A0A5C3KKX6_9AGAR1.040e-846.94Ras GEF n=1 Tax=Coprinopsis marcescibilis TaxID=23... [more]
A0A4Y7SLV6_9AGAR1.040e-844.90Ras GEF n=1 Tax=Coprinellus micaceus TaxID=71717 R... [more]
A0A672IZE1_SALFA1.420e-844.90Uncharacterized protein n=2 Tax=Salarias fasciatus... [more]
F1QL28_DANRE2.070e-853.33Vav 3 guanine nucleotide exchange factor a (Fragme... [more]
A0A669D6B2_ORENI2.660e-855.56Vav 3 guanine nucleotide exchange factor b n=2 Tax... [more]
A0A668V2U7_OREAU2.660e-855.56Vav 3 guanine nucleotide exchange factor b n=1 Tax... [more]
A0A669BBI1_ORENI2.660e-855.56Vav 3 guanine nucleotide exchange factor b n=4 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104700contigM-pyrifera_M_contig104700:22..171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.2
Seed ortholog evalue4.1e-08
Seed eggNOG ortholog208960.XP_007271389.1
Preferred nameBUD5
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000131,GO:0000278,GO:0000281,GO:0000282,GO:0000910,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005933,GO:0005935,GO:0007049,GO:0007114,GO:0007120,GO:0007121,GO:0007163,GO:0008150,GO:0009987,GO:0017016,GO:0019899,GO:0019954,GO:0022402,GO:0030010,GO:0030427,GO:0031267,GO:0032505,GO:0044424,GO:0044464,GO:0051020,GO:0051301,GO:0061640,GO:0065007,GO:0065009,GO:0098772,GO:1903047
EggNOG free text desc.Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif
EggNOG OGs225NC@155619,38Z29@33154,3H1NH@355688,3NVMK@4751,3UYMV@5204,KOG2070@1,KOG2070@2759,KOG3417@1,KOG3417@2759
COG Functional cat.T
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.786376-CDS-M-pyrifera_M_contig104700:21..1711622815554.786376-CDS-M-pyrifera_M_contig104700:21..171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104700 22..171 -
1692277461.6188319-CDS-M-pyrifera_M_contig104700:21..1711692277461.6188319-CDS-M-pyrifera_M_contig104700:21..171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104700 22..171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104700.1009.1prot_M-pyrifera_M_contig104700.1009.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104700 22..171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104700.1009.1

>prot_M-pyrifera_M_contig104700.1009.1 ID=prot_M-pyrifera_M_contig104700.1009.1|Name=mRNA_M-pyrifera_M_contig104700.1009.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
VRALAAFAPQHEHCLALEEGDVVEVLSRDASGWWRGCVGDRAGWFPSSYV
back to top

mRNA from alignment at M-pyrifera_M_contig104700:22..171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104700.1009.1 ID=mRNA_M-pyrifera_M_contig104700.1009.1|Name=mRNA_M-pyrifera_M_contig104700.1009.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig104700:22..171- (Macrocystis pyrifera P11B4 male)
GTACGTGCCCTGGCAGCGTTCGCTCCGCAGCACGAGCACTGTCTGGCGCT
GGAGGAGGGCGACGTGGTGGAGGTGCTGTCTCGAGACGCGTCCGGCTGGT
GGCGTGGCTGCGTCGGCGACCGGGCCGGCTGGTTCCCCAGCTCGTACGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104700:22..171-

>mRNA_M-pyrifera_M_contig104700.1009.1 ID=mRNA_M-pyrifera_M_contig104700.1009.1|Name=mRNA_M-pyrifera_M_contig104700.1009.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig104700:22..171- (Macrocystis pyrifera P11B4 male)
GTACGTGCCCTGGCAGCGTTCGCTCCGCAGCACGAGCACTGTCTGGCGCT
GGAGGAGGGCGACGTGGTGGAGGTGCTGTCTCGAGACGCGTCCGGCTGGT
GGCGTGGCTGCGTCGGCGACCGGGCCGGCTGGTTCCCCAGCTCGTACGTG
GTACGTGCCCTGGCAGCGTTCGCTCCGCAGCACGAGCACTGTCTGGCGCT
GGAGGAGGGCGACGTGGTGGAGGTGCTGTCTCGAGACGCGTCCGGCTGGT
GGCGTGGCTGCGTCGGCGACCGGGCCGGCTGGTTCCCCAGCTCGTACGTG
back to top