mRNA_M-pyrifera_M_contig104564.982.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104564.982.1
Unique NamemRNA_M-pyrifera_M_contig104564.982.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104564.982.1 vs. uniprot
Match: A0A7S4Q7P3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q7P3_9DINO)

HSP 1 Score: 192 bits (489), Expect = 7.870e-56
Identity = 98/171 (57.31%), Postives = 119/171 (69.59%), Query Frame = 1 
Query:   19 VLDVGLGKTLLTACYVRHFLDQTPLDIRAVLWVTPSDLVQPTLEQLQRRWRLPACLLAASAVPKKGHINLVAHDHLRKKFTQKQQRLQGGAASVVDELASWAPFMVVVLDEVDTMYANTQRTSAAHRISALAAKLVCQTATPLRNSRHEQLAAWLAKTENYPVDKRNWLVA 531
            V+D G GKTL    Y+R FLD + +D+R VLWVTP++LV+PTLEQL+RRW  PAC L     P + H+N+V HD LRK               V  ELA+ AP  +VV DE DTMYA TQRTSAAHR++AL  KLVCQTATPLRN+++EQLA WL +TE +PVD  NWLVA
Sbjct:  285 VMDTGYGKTLTALSYLRRFLDASAVDVRCVLWVTPTELVRPTLEQLRRRWGAPACELPEDGRPLEAHVNVVKHDRLRK---------------VGRELAAAAPRTLVVFDEADTMYAATQRTSAAHRVAALCPKLVCQTATPLRNTKNEQLAEWLQRTERFPVDGGNWLVA 440
[Close]
BLAST of mRNA_M-pyrifera_M_contig104564.982.1 vs. uniprot
Match: A0A7S1ZT48_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZT48_TRICV)

HSP 1 Score: 90.9 bits (224), Expect = 2.910e-18
Identity = 66/188 (35.11%), Postives = 97/188 (51.60%), Query Frame = 1 
Query:   19 VLDVGLGKTLLTACYVRHFLDQTPLDIRAV---LWVTPSD---------LVQPTLEQLQRRWRLPACLLA-----ASAVPKKGHINLVAHDHLRKKFTQKQQRLQGGAASVVDELASWAPFMVVVLDEVDTMYANTQRTSAAHRISALAAKLVCQTATPLRNSRHEQLAAWLAKTENYPVDKRNWLVA 531
            V++ G+GKTL    +  H L   P  +  V   +WVTP           L++   +QL RRW  P   ++     A A  ++G +N+VAHDHLRK               ++ +L    P  VVV DEVD +Y  T+RTSAA  +++   + V  TATP+  +  ++LA WL   ++YPV  RN+LVA
Sbjct:   34 VMETGMGKTLTALRFFSHQLAHFPAYVGRVDYFVWVTPPGKKLGNNEFTLIKSLGKQL-RRWGAPYVTVSPPRGGACASFRRGVVNVVAHDHLRK---------------MLSDLMRIGPRSVVVFDEVDELYNATKRTSAALLLASSCWRFVAMTATPMTKT-VDRLATWLGLAQHYPVMNRNYLVA 204
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104564.982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4Q7P3_9DINO7.870e-5657.31Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S1ZT48_TRICV2.910e-1835.11Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104564contigM-pyrifera_M_contig104564:1..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size531
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.2128224-CDS-M-pyrifera_M_contig104564:0..5311622815553.2128224-CDS-M-pyrifera_M_contig104564:0..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104564 1..531 -
1692277460.8676264-CDS-M-pyrifera_M_contig104564:0..5311692277460.8676264-CDS-M-pyrifera_M_contig104564:0..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104564 1..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104564.982.1prot_M-pyrifera_M_contig104564.982.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104564 1..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104564.982.1

>prot_M-pyrifera_M_contig104564.982.1 ID=prot_M-pyrifera_M_contig104564.982.1|Name=mRNA_M-pyrifera_M_contig104564.982.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
MLTGTQVLDVGLGKTLLTACYVRHFLDQTPLDIRAVLWVTPSDLVQPTLE
QLQRRWRLPACLLAASAVPKKGHINLVAHDHLRKKFTQKQQRLQGGAASV
VDELASWAPFMVVVLDEVDTMYANTQRTSAAHRISALAAKLVCQTATPLR
NSRHEQLAAWLAKTENYPVDKRNWLVA
back to top

mRNA from alignment at M-pyrifera_M_contig104564:1..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104564.982.1 ID=mRNA_M-pyrifera_M_contig104564.982.1|Name=mRNA_M-pyrifera_M_contig104564.982.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig104564:1..531- (Macrocystis pyrifera P11B4 male)
ATGCTGACAGGCACACAGGTTCTCGACGTGGGCCTGGGGAAGACGCTGCT
GACGGCGTGCTACGTGCGGCACTTTCTCGACCAGACGCCACTCGACATCC
GGGCGGTGCTGTGGGTGACACCCTCAGACCTCGTGCAGCCGACGCTGGAG
CAGCTGCAGCGGCGCTGGCGGCTGCCCGCCTGCCTCCTCGCAGCCAGCGC
AGTTCCCAAAAAGGGCCACATCAACCTCGTGGCCCACGACCACCTCAGAA
AGAAGTTCACGCAGAAGCAGCAGCGGCTGCAGGGCGGCGCCGCGTCTGTG
GTGGACGAGCTGGCGAGCTGGGCACCCTTCATGGTGGTAGTGCTCGACGA
GGTGGACACGATGTACGCCAACACCCAGCGTACCTCTGCAGCGCACAGGA
TCTCTGCGCTAGCAGCCAAGCTGGTCTGCCAGACGGCGACGCCTCTGCGT
AACAGCAGGCACGAGCAGCTGGCCGCCTGGTTGGCCAAGACAGAGAACTA
TCCCGTGGACAAGAGGAACTGGCTGGTCGCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104564:1..531-

>mRNA_M-pyrifera_M_contig104564.982.1 ID=mRNA_M-pyrifera_M_contig104564.982.1|Name=mRNA_M-pyrifera_M_contig104564.982.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig104564:1..531- (Macrocystis pyrifera P11B4 male)
ATGCTGACAGGCACACAGGTTCTCGACGTGGGCCTGGGGAAGACGCTGCT
GACGGCGTGCTACGTGCGGCACTTTCTCGACCAGACGCCACTCGACATCC
GGGCGGTGCTGTGGGTGACACCCTCAGACCTCGTGCAGCCGACGCTGGAG
CAGCTGCAGCGGCGCTGGCGGCTGCCCGCCTGCCTCCTCGCAGCCAGCGC
AGTTCCCAAAAAGGGCCACATCAACCTCGTGGCCCACGACCACCTCAGAA
AGAAGTTCACGCAGAAGCAGCAGCGGCTGCAGGGCGGCGCCGCGTCTGTG
GTGGACGAGCTGGCGAGCTGGGCACCCTTCATGGTGGTAGTGCTCGACGA
GGTGGACACGATGTACGCCAACACCCAGCGTACCTCTGCAGCGCACAGGA
TCTCTGCGCTAGCAGCCAAGCTGGTCTGCCAGACGGCGACGCCTCTGCGT
AACAGCAGGCACGAGCAGCTGGCCGCCTGGTTGGCCAAGACAGAGAACTA
TCCCGTGGACAAGAGGAACTGGCTGGTCGCAATGCTGACAGGCACACAGG
TTCTCGACGTGGGCCTGGGGAAGACGCTGCTGACGGCGTGCTACGTGCGG
CACTTTCTCGACCAGACGCCACTCGACATCCGGGCGGTGCTGTGGGTGAC
ACCCTCAGACCTCGTGCAGCCGACGCTGGAGCAGCTGCAGCGGCGCTGGC
GGCTGCCCGCCTGCCTCCTCGCAGCCAGCGCAGTTCCCAAAAAGGGCCAC
ATCAACCTCGTGGCCCACGACCACCTCAGAAAGAAGTTCACGCAGAAGCA
GCAGCGGCTGCAGGGCGGCGCCGCGTCTGTGGTGGACGAGCTGGCGAGCT
GGGCACCCTTCATGGTGGTAGTGCTCGACGAGGTGGACACGATGTACGCC
AACACCCAGCGTACCTCTGCAGCGCACAGGATCTCTGCGCTAGCAGCCAA
GCTGGTCTGCCAGACGGCGACGCCTCTGCGTAACAGCAGGCACGAGCAGC
TGGCCGCCTGGTTGGCCAAGACAGAGAACTATCCCGTGGACAAGAGGAAC
TGGCTGGTCGCA
back to top