mRNA_M-pyrifera_M_contig10450.972.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10450.972.1
Unique NamemRNA_M-pyrifera_M_contig10450.972.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10450.972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10450contigM-pyrifera_M_contig10450:1673..2358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size686
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10450.972.1prot_M-pyrifera_M_contig10450.972.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10450 1726..2163 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.5092914-UTR-M-pyrifera_M_contig10450:1672..17251622815552.5092914-UTR-M-pyrifera_M_contig10450:1672..1725Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10450 1673..1725 +
1692277460.476838-UTR-M-pyrifera_M_contig10450:1672..17251692277460.476838-UTR-M-pyrifera_M_contig10450:1672..1725Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10450 1673..1725 +
1622815552.5329525-UTR-M-pyrifera_M_contig10450:2163..23581622815552.5329525-UTR-M-pyrifera_M_contig10450:2163..2358Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10450 2164..2358 +
1692277460.4968991-UTR-M-pyrifera_M_contig10450:2163..23581692277460.4968991-UTR-M-pyrifera_M_contig10450:2163..2358Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10450 2164..2358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.521695-CDS-M-pyrifera_M_contig10450:1725..21631622815552.521695-CDS-M-pyrifera_M_contig10450:1725..2163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10450 1726..2163 +
1692277460.486905-CDS-M-pyrifera_M_contig10450:1725..21631692277460.486905-CDS-M-pyrifera_M_contig10450:1725..2163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10450 1726..2163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10450.972.1

>prot_M-pyrifera_M_contig10450.972.1 ID=prot_M-pyrifera_M_contig10450.972.1|Name=mRNA_M-pyrifera_M_contig10450.972.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MPSVFLLRKTLHYYVVVAHALVRSISLGRNRLVRPWKPTAPPSSGLLLVF
CATSGCLCYWLAAGFALPPAHAYDRRSIIVVFLAFGFQRFRRDLPLYAVM
AATRRAFVVPVVACEGLPARRVLSRRVQANYFCVHAPRKREEGEE*
back to top

mRNA from alignment at M-pyrifera_M_contig10450:1673..2358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10450.972.1 ID=mRNA_M-pyrifera_M_contig10450.972.1|Name=mRNA_M-pyrifera_M_contig10450.972.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=686bp|location=Sequence derived from alignment at M-pyrifera_M_contig10450:1673..2358+ (Macrocystis pyrifera P11B4 male)
GTTCGTTACCGCTACAAAGAAAGCGCCTGTACATCGTGTCACAAACTTAA
GTAATGCCTTCCGTTTTTCTTCTTCGGAAAACGCTCCACTACTACGTTGT
CGTGGCACACGCTCTTGTTAGAAGCATTTCCTTGGGCCGCAACCGATTGG
TCAGGCCGTGGAAACCCACGGCGCCCCCGTCGTCCGGACTTTTGCTTGTG
TTTTGTGCGACATCTGGCTGCTTGTGTTATTGGTTGGCGGCAGGGTTTGC
GTTGCCGCCCGCGCACGCATACGATCGGAGGTCGATCATAGTTGTGTTTC
TAGCTTTTGGCTTCCAGCGCTTTCGGCGCGATTTGCCACTTTATGCCGTG
ATGGCAGCTACCCGTCGCGCTTTTGTCGTTCCGGTGGTTGCCTGCGAAGG
GCTGCCCGCTCGTCGCGTGTTGTCCAGGCGTGTCCAGGCGAATTATTTCT
GCGTCCATGCTCCACGGAAAAGGGAGGAGGGGGAGGAGTAGGAGGAGCAG
AAGGAGGGGTCGGCGTGAGAGAGGTGACCCGCCTGCGTATCGAGGTGGAT
TTTTTTCTGCGTCCGTGGCCTGGAACAAAGAAGGGTGGTTGGCGTGAGCA
AAGTGTTGCGTCTGTGGTCGGCGAAGGTGGTCGGCGAAGGGACAGTGCCG
CGCCGTGGGAAAGGTCGTGAGACCGTTGTTGCTTTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10450:1673..2358+

>mRNA_M-pyrifera_M_contig10450.972.1 ID=mRNA_M-pyrifera_M_contig10450.972.1|Name=mRNA_M-pyrifera_M_contig10450.972.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig10450:1673..2358+ (Macrocystis pyrifera P11B4 male)
ATGCCTTCCGTTTTTCTTCTTCGGAAAACGCTCCACTACTACGTTGTCGT
GGCACACGCTCTTGTTAGAAGCATTTCCTTGGGCCGCAACCGATTGGTCA
GGCCGTGGAAACCCACGGCGCCCCCGTCGTCCGGACTTTTGCTTGTGTTT
TGTGCGACATCTGGCTGCTTGTGTTATTGGTTGGCGGCAGGGTTTGCGTT
GCCGCCCGCGCACGCATACGATCGGAGGTCGATCATAGTTGTGTTTCTAG
CTTTTGGCTTCCAGCGCTTTCGGCGCGATTTGCCACTTTATGCCGTGATG
GCAGCTACCCGTCGCGCTTTTGTCGTTCCGGTGGTTGCCTGCGAAGGGCT
GCCCGCTCGTCGCGTGTTGTCCAGGCGTGTCCAGGCGAATTATTTCTGCG
TCCATGCTCCACGGAAAAGGGAGGAGGGGGAGGAGTAGATGCCTTCCGTT
TTTCTTCTTCGGAAAACGCTCCACTACTACGTTGTCGTGGCACACGCTCT
TGTTAGAAGCATTTCCTTGGGCCGCAACCGATTGGTCAGGCCGTGGAAAC
CCACGGCGCCCCCGTCGTCCGGACTTTTGCTTGTGTTTTGTGCGACATCT
GGCTGCTTGTGTTATTGGTTGGCGGCAGGGTTTGCGTTGCCGCCCGCGCA
CGCATACGATCGGAGGTCGATCATAGTTGTGTTTCTAGCTTTTGGCTTCC
AGCGCTTTCGGCGCGATTTGCCACTTTATGCCGTGATGGCAGCTACCCGT
CGCGCTTTTGTCGTTCCGGTGGTTGCCTGCGAAGGGCTGCCCGCTCGTCG
CGTGTTGTCCAGGCGTGTCCAGGCGAATTATTTCTGCGTCCATGCTCCAC
GGAAAAGGGAGGAGGGGGAGGAGTAG
back to top