mRNA_M-pyrifera_M_contig104445.953.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104445.953.1
Unique NamemRNA_M-pyrifera_M_contig104445.953.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104445.953.1 vs. uniprot
Match: A0A1B6Y5F7_9BACT (LTD domain-containing protein n=11 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1B6Y5F7_9BACT)

HSP 1 Score: 134 bits (336), Expect = 1.250e-34
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 QNYPNPFNPTSTIQFSLPEASQVRLDVFTITGQLVATLVDNRLSTGEHSVTFDARNLASGIYIYRIVAGKFVQTKRMTLIK 243
            QNYPNPFNPTSTIQF+LP++  VRLDVFTITGQLV TLV+ R+ +GEHSVTFD  NLASG+YIYRI+AGK +QTKRMTLIK
Sbjct: 1165 QNYPNPFNPTSTIQFTLPQSGDVRLDVFTITGQLVTTLVNTRMGSGEHSVTFDGSNLASGVYIYRIMAGKNIQTKRMTLIK 1245
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BLAST of mRNA_M-pyrifera_M_contig104445.953.1 vs. uniprot
Match: UPI001B7FC289 (T9SS type A sorting domain-containing protein n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI001B7FC289)

HSP 1 Score: 123 bits (309), Expect = 5.530e-31
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 QNYPNPFNPTSTIQFSLPEASQVRLDVFTITGQLVATLVDNRLSTGEHSVTFDARNLASGIYIYRIVAGKFVQTKRMTLIK 243
            QNYPNPFNPTS IQF+LP+ ++VRL+VF ITGQLV+TLV  ++S GEH+V F+A NLASG+YIYRI AG FVQTK+MTLIK
Sbjct: 1149 QNYPNPFNPTSYIQFTLPQTAEVRLEVFNITGQLVSTLVSGKMSAGEHTVQFNAGNLASGVYIYRIRAGNFVQTKKMTLIK 1229
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BLAST of mRNA_M-pyrifera_M_contig104445.953.1 vs. uniprot
Match: A0A2D8CHG5_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CHG5_9BACT)

HSP 1 Score: 114 bits (286), Expect = 8.390e-31
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 QNYPNPFNPTSTIQFSLPEASQVRLDVFTITGQLVATLVDNRLSTGEHSVTFDARNLASGIYIYRIVAGKFVQTKRMTLIK 243
            QNYPNPFNPT+ I F LP+A+ V+L VF + GQ V TLVDNR+  G H VTFDARNLASG+Y+YRI AG F+ TK+M LIK
Sbjct:   77 QNYPNPFNPTTNINFDLPQAADVQLTVFNMLGQRVMTLVDNRMEAGAHKVTFDARNLASGMYMYRIEAGSFINTKKMMLIK 157
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BLAST of mRNA_M-pyrifera_M_contig104445.953.1 vs. uniprot
Match: A0A2D9FZ33_9BACT (Uncharacterized protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FZ33_9BACT)

HSP 1 Score: 120 bits (300), Expect = 9.130e-30
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 QNYPNPFNPTSTIQFSLPEASQVRLDVFTITGQLVATLVDNRLSTGEHSVTFDARNLASGIYIYRIVAGKFVQTKRMTLIK 243
            QNYPNPFNPT+TI ++LP AS+VRL+VF ITGQ VATLVD R S G HSV FDA NL+SG+Y+YRI AG FVQ K++TLIK
Sbjct: 1579 QNYPNPFNPTTTIMYALPRASEVRLEVFNITGQKVATLVDKRQSAGYHSVPFDAGNLSSGLYLYRIKAGNFVQVKKLTLIK 1659
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BLAST of mRNA_M-pyrifera_M_contig104445.953.1 vs. uniprot
Match: A0A356X667_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A356X667_9BACT)

HSP 1 Score: 118 bits (295), Expect = 1.590e-29
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 QNYPNPFNPTSTIQFSLPEASQVRLDVFTITGQLVATLVDNRLSTGEHSVTFDARNLASGIYIYRIVAGKFVQTKRMTLIK 243
            QNYPNPFNPT+TI ++LP AS+VRL+VF ITGQ VATLVD R S G HSV FDA +L+SG+Y+YRI AG FVQ K++TLIK
Sbjct:  397 QNYPNPFNPTTTIMYALPRASEVRLEVFNITGQKVATLVDKRQSAGYHSVPFDAGSLSSGLYLYRIKAGNFVQVKKLTLIK 477
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BLAST of mRNA_M-pyrifera_M_contig104445.953.1 vs. uniprot
Match: A0A352SN66_9BACT (T9SS C-terminal target domain-containing protein n=3 Tax=Bacteroidetes TaxID=976 RepID=A0A352SN66_9BACT)

HSP 1 Score: 109 bits (272), Expect = 9.960e-29
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 QNYPNPFNPTSTIQFSLPEASQVRLDVFTITGQLVATLVDNRLSTGEHSVTFDARNLASGIYIYRIVAGKFVQTKRMTLIK 243
            QNYPNPFNPT+ I+F+LP A+ V+L+VF I GQ V TLV+ +++ G H+VTFDA NL+SG+YIYRI AG++ Q KRM LIK
Sbjct:   73 QNYPNPFNPTTNIKFALPNAADVKLEVFNILGQRVGTLVNGQMNAGYHTVTFDATNLSSGVYIYRISAGQYSQVKRMMLIK 153
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BLAST of mRNA_M-pyrifera_M_contig104445.953.1 vs. uniprot
Match: A0A2T4XA38_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2T4XA38_9BACT)

HSP 1 Score: 107 bits (267), Expect = 1.130e-28
Identity = 47/81 (58.02%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 QNYPNPFNPTSTIQFSLPEASQVRLDVFTITGQLVATLVDNRLSTGEHSVTFDARNLASGIYIYRIVAGKFVQTKRMTLIK 243
            QNYPNPFNP+++I+++LPEAS+V+L+V+ ITGQ +ATLV+   S G + V+FDA NL+SG+Y+YR+ AG F QT++M L+K
Sbjct:   16 QNYPNPFNPSTSIRYALPEASEVQLEVYNITGQRIATLVNTSQSAGTYEVSFDASNLSSGVYLYRLTAGSFTQTRQMMLVK 96
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BLAST of mRNA_M-pyrifera_M_contig104445.953.1 vs. uniprot
Match: A0A5Q4FQC9_9BACT (T9SS C-terminal target domain-containing protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A5Q4FQC9_9BACT)

HSP 1 Score: 110 bits (276), Expect = 1.170e-28
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    1 QNYPNPFNPTSTIQFSLPEASQVRLDVFTITGQLVATLVDNRLSTGEHSVTFDARNLASGIYIYRIVAGKFVQTKRMTLIK 243
            QNYPNPFNP + IQF+LPE   VRLDV+ ITGQ VATLV+ +   G H+V FD   +ASG+YIYRI AG FVQT++MTLIK
Sbjct:  132 QNYPNPFNPATKIQFTLPETMDVRLDVYNITGQRVATLVNEQREAGAHTVEFDGTRVASGVYIYRIQAGSFVQTRKMTLIK 212
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BLAST of mRNA_M-pyrifera_M_contig104445.953.1 vs. uniprot
Match: A0A371QKD8_9BACT (DUF4397 domain-containing protein n=1 Tax=Rhodohalobacter sp. SW132 TaxID=2293433 RepID=A0A371QKD8_9BACT)

HSP 1 Score: 114 bits (286), Expect = 6.970e-28
Identity = 53/81 (65.43%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:    1 QNYPNPFNPTSTIQFSLPEASQVRLDVFTITGQLVATLVDNRLSTGEHSVTFDARNLASGIYIYRIVAGKFVQTKRMTLIK 243
            QNYPNPFNPT+TI ++LPEAS VR++VF++TGQ VAT+VD R S G+++V+FDA  L+SG+Y+YRI A  F QT+RMTLIK
Sbjct:  731 QNYPNPFNPTTTISYALPEASNVRIEVFSVTGQQVATVVDTRQSAGQYNVSFDASALSSGVYLYRIQADNFTQTRRMTLIK 811
[Close]
BLAST of mRNA_M-pyrifera_M_contig104445.953.1 vs. uniprot
Match: A0A0P7WBR4_9BACT (Extracellular CHRD domain protein n=1 Tax=Bacteroidetes bacterium HLUCCA01 TaxID=1666909 RepID=A0A0P7WBR4_9BACT)

HSP 1 Score: 114 bits (286), Expect = 7.080e-28
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:    1 QNYPNPFNPTSTIQFSLPEASQVRLDVFTITGQLVATLVDNRLSTGEHSVTFDARNLASGIYIYRIVAGKFVQTKRMTLIK 243
            QNYPNPFNPT+TI + LP  +QVRL+V+T+TGQLVATLV++    G H V FDA  LASG+YIYRI+AG FVQT++MTLIK
Sbjct: 1449 QNYPNPFNPTTTISYQLPVEAQVRLNVYTVTGQLVATLVNDVRPAGTHQVNFDATQLASGVYIYRIMAGDFVQTQKMTLIK 1529
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104445.953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B6Y5F7_9BACT1.250e-3479.01LTD domain-containing protein n=11 Tax=Bacteroidet... [more]
UPI001B7FC2895.530e-3172.84T9SS type A sorting domain-containing protein n=1 ... [more]
A0A2D8CHG5_9BACT8.390e-3166.67Por_Secre_tail domain-containing protein n=2 Tax=B... [more]
A0A2D9FZ33_9BACT9.130e-3071.60Uncharacterized protein n=2 Tax=Balneolaceae TaxID... [more]
A0A356X667_9BACT1.590e-2970.37Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
A0A352SN66_9BACT9.960e-2962.96T9SS C-terminal target domain-containing protein n... [more]
A0A2T4XA38_9BACT1.130e-2858.02Por_Secre_tail domain-containing protein n=1 Tax=B... [more]
A0A5Q4FQC9_9BACT1.170e-2865.43T9SS C-terminal target domain-containing protein (... [more]
A0A371QKD8_9BACT6.970e-2865.43DUF4397 domain-containing protein n=1 Tax=Rhodohal... [more]
A0A0P7WBR4_9BACT7.080e-2867.90Extracellular CHRD domain protein n=1 Tax=Bacteroi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104445contigM-pyrifera_M_contig104445:3..248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score124.8
Seed ortholog evalue1.9e-26
Seed eggNOG ortholog1121930.AQXG01000004_gene2843
Preferred namexynX5
KEGG koko:K01181
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the 5'-nucleotidase family
EggNOG OGs1IY1S@117747,4PPNB@976,COG0737@1,COG0737@2,COG2356@1,COG2356@2
EC3.2.1.8
COG Functional cat.F
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.4702628-CDS-M-pyrifera_M_contig104445:2..2481622815551.4702628-CDS-M-pyrifera_M_contig104445:2..248Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104445 3..248 +
1692277459.9937458-CDS-M-pyrifera_M_contig104445:2..2481692277459.9937458-CDS-M-pyrifera_M_contig104445:2..248Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104445 3..248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104445.953.1prot_M-pyrifera_M_contig104445.953.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104445 3..248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104445.953.1

>prot_M-pyrifera_M_contig104445.953.1 ID=prot_M-pyrifera_M_contig104445.953.1|Name=mRNA_M-pyrifera_M_contig104445.953.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
QNYPNPFNPTSTIQFSLPEASQVRLDVFTITGQLVATLVDNRLSTGEHSV
TFDARNLASGIYIYRIVAGKFVQTKRMTLIK*
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mRNA from alignment at M-pyrifera_M_contig104445:3..248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104445.953.1 ID=mRNA_M-pyrifera_M_contig104445.953.1|Name=mRNA_M-pyrifera_M_contig104445.953.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig104445:3..248+ (Macrocystis pyrifera P11B4 male)
CAAAATTATCCTAATCCGTTTAACCCAACTTCTACCATTCAGTTCTCATT
ACCTGAAGCTAGTCAAGTTCGTTTAGATGTATTTACTATAACAGGTCAAT
TAGTGGCTACTTTAGTAGATAACAGATTAAGTACTGGAGAGCACTCTGTT
ACTTTCGACGCTAGAAACTTAGCTAGTGGTATTTATATTTATAGAATAGT
GGCAGGAAAATTTGTTCAAACAAAACGAATGACACTTATTAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104445:3..248+

>mRNA_M-pyrifera_M_contig104445.953.1 ID=mRNA_M-pyrifera_M_contig104445.953.1|Name=mRNA_M-pyrifera_M_contig104445.953.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig104445:3..248+ (Macrocystis pyrifera P11B4 male)
CAAAATTATCCTAATCCGTTTAACCCAACTTCTACCATTCAGTTCTCATT
ACCTGAAGCTAGTCAAGTTCGTTTAGATGTATTTACTATAACAGGTCAAT
TAGTGGCTACTTTAGTAGATAACAGATTAAGTACTGGAGAGCACTCTGTT
ACTTTCGACGCTAGAAACTTAGCTAGTGGTATTTATATTTATAGAATAGT
GGCAGGAAAATTTGTTCAAACAAAACGAATGACACTTATTAAGTAACAAA
ATTATCCTAATCCGTTTAACCCAACTTCTACCATTCAGTTCTCATTACCT
GAAGCTAGTCAAGTTCGTTTAGATGTATTTACTATAACAGGTCAATTAGT
GGCTACTTTAGTAGATAACAGATTAAGTACTGGAGAGCACTCTGTTACTT
TCGACGCTAGAAACTTAGCTAGTGGTATTTATATTTATAGAATAGTGGCA
GGAAAATTTGTTCAAACAAAACGAATGACACTTATTAAGTAA
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