mRNA_M-pyrifera_M_contig104336.924.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104336.924.1
Unique NamemRNA_M-pyrifera_M_contig104336.924.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104336.924.1 vs. uniprot
Match: A0A7S1ZRI1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZRI1_TRICV)

HSP 1 Score: 82.8 bits (203), Expect = 8.530e-16
Identity = 45/128 (35.16%), Postives = 80/128 (62.50%), Query Frame = 1
Query:   43 LCIAQVVAWLCLWPVWLFISSFFGEDVYGGNPASPIGSEQRNLFEEGVRRGSLAAGAMAIFAA-ITSPLLPPIVSRVGPYVVWVCALLLACVGLALAGAVKHRIASVLLVGLAGPAWAVLNAVVFASV 423
            LC+ Q+++W+CLWPVWLF +++FG  VY G+P +P GS+ ++ ++ G+R GSLA  ++ + +A + + +LP +  RVG    +V    +  V +     V+  + S +L+  AG +WA  N+V +A +
Sbjct:  219 LCLQQLLSWMCLWPVWLFATAYFGASVYDGDPNAPAGSKGQHNYDGGIRAGSLALASLGLSSATVAATILPWLSHRVGMRETYVMMQGVGSVAILTLYIVQEPMWSHVLIATAGLSWAANNSVPYAVI 346          
BLAST of mRNA_M-pyrifera_M_contig104336.924.1 vs. uniprot
Match: A0A7J7J5A1_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7J5A1_BUGNE)

HSP 1 Score: 72.0 bits (175), Expect = 6.200e-12
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   25 PIGVWWLCIAQVVAWLCLWPVWLFISSFFGEDVYGGNPASPIGSEQRNLFEEGVRRGSLAAGAMAIFAAITSPLLPPIVSRVGPYVVWVCALLLACVGLALAGAVKHRIAS 357
            P  +W LCI  +  W+ L    L+ + F G+ +Y G P S  GS  RNL++EGVR GSLA    ++ + I S  +P +++R+G   V+VC  L+  VG+    A  + + S
Sbjct:  423 PKYMWLLCITNLFCWMSLTTYSLYFTDFVGQRIYKGEPKSLRGSAARNLYDEGVRMGSLAMILYSVSSTIYSYFIPSLINRLGTKTVYVCGQLVYTVGMMSLAATSNLVVS 533          
BLAST of mRNA_M-pyrifera_M_contig104336.924.1 vs. uniprot
Match: F0ZL05_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZL05_DICPU)

HSP 1 Score: 71.2 bits (173), Expect = 1.150e-11
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   43 LCIAQVVAWLCLWPVWLFISSFFGEDVYGGNPASPIGSEQRNLFEEGVRRGSLAAGAMAIFAAIT---SPLLPPIVSRVGPYVVWVCALLLACVGLALAGAVKHRIASVLLVGLAGPAWAVLNAVVFASV 423
            LC  Q  +W+  +   LF++++ G +VYGGNP +P GS +R  F+EGVR GSL    + I + +T   S L+P ++  VG   +++   +L C+  AL  A+  +I S+LL+   G  WAV+  + F+ V
Sbjct:  407 LCSVQFFSWIGWFSFILFVTTWVGVNVYGGNPNAPEGSPERTKFQEGVRWGSLG---LTISSGVTIGISLLIPILIRFVGIKKIYIFGNILQCIFFALFLAIHDKIGSILLIAATGIPWAVVMILPFSIV 533          
BLAST of mRNA_M-pyrifera_M_contig104336.924.1 vs. uniprot
Match: UPI000644A00F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A00F)

HSP 1 Score: 69.3 bits (168), Expect = 4.990e-11
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   46 CIAQVVAWLCLWPVWLFISSFFGEDVYGGNPASPIGSEQRNLFEEGVRRGSLAAGAMAIFAAITSPLLPPIVSRVGPYVVWVCALLLACVGLALAGAVKHRIASVLLVGLAGPAWAVLNAVVFASV 423
            C  Q  +W+  +   L+++++ G DVY GNP +P GS   +LF+EGVRRGSL     ++ A  +S LLP ++  +G   ++     +  V   L   V+ RI+ + L+G  G +WAV+  + F  V
Sbjct:  246 CCTQFFSWIGWFCFVLYVTTWVGVDVYHGNPNAPAGSIGLDLFQEGVRRGSLGLSIQSVVAIASSLLLPWLIRLIGHKEIYFIGTFIQAVCFGLFFFVEGRISCLFLIGATGFSWAVVMVMPFTIV 371          
BLAST of mRNA_M-pyrifera_M_contig104336.924.1 vs. uniprot
Match: A0A7M7RF40_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7RF40_STRPU)

HSP 1 Score: 67.8 bits (164), Expect = 1.890e-10
Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   43 LCIAQVVAWLCLWPVWLFISSFFGEDVYGGNPASPIGSEQRNLFEEGVRRGSLAAGAMAIFAAITSPLLPPIVSRVGPYVVWVCALLLACVGLALAGAVKHRIASVLLVGLAG 381
            LC   ++ W+ L    L+ + F G++VYGG+P +P GS+ R ++ +GVR+GS A    +I  +ITS     ++ ++G   V+V    + CV +AL  A++   A+ L    AG
Sbjct:  493 LCFTHLLGWMSLLCYSLYFTDFMGQEVYGGDPIAPAGSQARQIYSDGVRKGSYAMALYSITCSITSLCTEWLIRKIGAKWVYVGNQAIYCVSMALMAAIRTPWAAFLFSATAG 605          
BLAST of mRNA_M-pyrifera_M_contig104336.924.1 vs. uniprot
Match: A0A7S1THX4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THX4_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 2.380e-10
Identity = 32/84 (38.10%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   55 QVVAWLCLWPVWLFISSFFGEDVYGGNPASPIGSEQRNLFEEGVRRGSLAAGAMAIFAAITSPLLPPIVSRVGPYVVWVCALLL 306
            Q  A+   +  +++++ + G+DV GG+P  P+GS +R  F+ GVR G++    MAI + +  P+LP ++ RVG   VWV +LLL
Sbjct:  244 QFCAFFAWFATFIYLTHWIGQDVAGGSPDKPVGSNERRTFDYGVRMGNVGLALMAIVSIVIGPVLPMLMKRVGVRTVWVFSLLL 327          
BLAST of mRNA_M-pyrifera_M_contig104336.924.1 vs. uniprot
Match: UPI001C711499 (membrane-associated transporter protein-like n=4 Tax=Penaeus TaxID=133894 RepID=UPI001C711499)

HSP 1 Score: 66.6 bits (161), Expect = 4.820e-10
Identity = 41/129 (31.78%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   43 LCIAQVVAWLCLWPVWLFISSFFGEDVYGGNPASPIGSEQRNLFEEGVRRGSLAAGAMAIFAAITSPLLPPIVSRVGPYVVWVCALLLACVGLALAGAVKHRIASVLLVGLAGPAWAVLNAVVFASVRH 429
            LC+  +  W+ L    L+ + F GE V+GG+P +P GSE+R L+EEGVR G       ++  ++ S L+  +V   G   V+VC  L+  VG+    +++H  A ++    AG  ++ L  + +  V H
Sbjct:  522 LCLTNLFCWMSLVCYSLYFTDFVGEAVFGGDPGAPDGSEERVLYEEGVRFGCWGMALYSLSCSLYSFLIEKMVKVFGAKPVYVCGQLVYSVGMMFMASLRHPAAVIIFSCCAGVMYSTLFTMPYLLVAH 650          
BLAST of mRNA_M-pyrifera_M_contig104336.924.1 vs. uniprot
Match: UPI001E677133 (membrane-associated transporter protein-like isoform X1 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E677133)

HSP 1 Score: 65.5 bits (158), Expect = 1.210e-9
Identity = 40/129 (31.01%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   43 LCIAQVVAWLCLWPVWLFISSFFGEDVYGGNPASPIGSEQRNLFEEGVRRGSLAAGAMAIFAAITSPLLPPIVSRVGPYVVWVCALLLACVGLALAGAVKHRIASVLLVGLAGPAWAVLNAVVFASVRH 429
            LC+  +  W+ L    L+ + F GE V+GG+P +P G+E++ L+EEGVR G       ++  ++ S L+  +V R G   V+V   L+  VG+    +++H  A +L    AG  ++ L  + +  V H
Sbjct:  512 LCLTNLFCWMSLVCYSLYFTDFVGEAVFGGDPGAPDGTEEKELYEEGVRFGCWGMALYSLSCSVYSFLIEGLVKRFGARPVYVWGQLVYSVGMVCMASLRHPAAVILFSCCAGVMYSTLFTMPYLLVAH 640          
BLAST of mRNA_M-pyrifera_M_contig104336.924.1 vs. uniprot
Match: UPI001BB22CE1 (membrane-associated transporter protein-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB22CE1)

HSP 1 Score: 65.1 bits (157), Expect = 1.650e-9
Identity = 38/113 (33.63%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   43 LCIAQVVAWLCLWPVWLFISSFFGEDVYGGNPASPIGSEQRNLFEEGVRRGSLAAGAMAIFAAITSPLLPPIVSRVGPYVVWVCALLLACVGLALAGAVKHRIASVLLVGLAG 381
            LC   ++ W+ L    L+ + F G++VYGG+P +P GS  R ++ +GVR+GS A    +I  +ITS     ++ ++G   V+V    + CV +AL  A++   A+ L    AG
Sbjct:  486 LCFTHLLGWMSLLCYSLYFTDFMGQEVYGGDPTAPPGSMARQVYADGVRKGSYAMALYSITCSITSLCTEWLIRKIGAKWVYVGNQAIYCVSMALMAAIRAPWAAFLFSATAG 598          
BLAST of mRNA_M-pyrifera_M_contig104336.924.1 vs. uniprot
Match: F4PLG0_CAVFA (Sucrose proton symporter n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PLG0_CAVFA)

HSP 1 Score: 64.7 bits (156), Expect = 2.230e-9
Identity = 43/141 (30.50%), Postives = 80/141 (56.74%), Query Frame = 1
Query:    1 LIERLRLAPIGVWWLCIAQVVAWLCLWPVWLFISSFFGEDVYGGNPASPIGSEQRNLFEEGVRRGSLAAGAMAIFAAITSPLLPPIVSRVGPYVVWVCALLLACVGLALAGAVKHRIASVLLVGLAGPAWAVLNAVVFASV 423
            ++  +R  P+ +  +CI Q  +W+  +   L+++++ G +VY G+P +P GS  R+LF++GVRRGSL     +  + +TS L+P ++  VG   V+     +  +  AL    K ++ ++LL+G  G  W+V+  + F  V
Sbjct:  471 ILNGIRDMPMFLKRVCIVQFFSWIGWFCFVLYVTTWVGVNVYQGDPNAPEGSPGRDLFQQGVRRGSLGLMMSSGVSIVTSLLIPTLIRLVGIKYVYFAGNAIQTLLFALFFICKSKLWALLLIGATGIPWSVVMVLPFTIV 611          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104336.924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1ZRI1_TRICV8.530e-1635.16Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7J7J5A1_BUGNE6.200e-1236.04Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
F0ZL05_DICPU1.150e-1136.15Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
UPI000644A00F4.990e-1134.13hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7M7RF40_STRPU1.890e-1033.63Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A7S1THX4_9RHOD2.380e-1038.10Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
UPI001C7114994.820e-1031.78membrane-associated transporter protein-like n=4 T... [more]
UPI001E6771331.210e-931.01membrane-associated transporter protein-like isofo... [more]
UPI001BB22CE11.650e-933.63membrane-associated transporter protein-like n=1 T... [more]
F4PLG0_CAVFA2.230e-930.50Sucrose proton symporter n=1 Tax=Cavenderia fascic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104336contigM-pyrifera_M_contig104336:43..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.4
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog7739.XP_002602984.1
KEGG koko:K06236,ko:K15378
KEGG TC2.A.2.4,2.A.2.6
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0008150,GO:0008515,GO:0008643,GO:0015144,GO:0015154,GO:0015157,GO:0015766,GO:0015770,GO:0015772,GO:0022857,GO:0031410,GO:0031982,GO:0034219,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0045177,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0097708
EggNOG free text desc.hexose transmembrane transport
EggNOG OGs38C87@33154,3BFF6@33208,3CTRQ@33213,481GQ@7711,KOG0637@1,KOG0637@2759
COG Functional cat.G
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko02000,ko04516
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.9306386-CDS-M-pyrifera_M_contig104336:42..4711622815549.9306386-CDS-M-pyrifera_M_contig104336:42..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104336 43..471 -
1692277459.3607168-CDS-M-pyrifera_M_contig104336:42..4711692277459.3607168-CDS-M-pyrifera_M_contig104336:42..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104336 43..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104336.924.1prot_M-pyrifera_M_contig104336.924.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104336 43..471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104336.924.1

>prot_M-pyrifera_M_contig104336.924.1 ID=prot_M-pyrifera_M_contig104336.924.1|Name=mRNA_M-pyrifera_M_contig104336.924.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
LIERLRLAPIGVWWLCIAQVVAWLCLWPVWLFISSFFGEDVYGGNPASPI
GSEQRNLFEEGVRRGSLAAGAMAIFAAITSPLLPPIVSRVGPYVVWVCAL
LLACVGLALAGAVKHRIASVLLVGLAGPAWAVLNAVVFASVRH
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mRNA from alignment at M-pyrifera_M_contig104336:43..471-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104336.924.1 ID=mRNA_M-pyrifera_M_contig104336.924.1|Name=mRNA_M-pyrifera_M_contig104336.924.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig104336:43..471- (Macrocystis pyrifera P11B4 male)
TTGATAGAGAGACTACGACTTGCACCAATAGGAGTTTGGTGGTTGTGCAT TGCTCAAGTTGTTGCATGGTTGTGTTTGTGGCCTGTGTGGTTGTTCATCT CTTCATTTTTTGGTGAAGATGTTTATGGAGGAAATCCTGCATCTCCCATT GGATCTGAACAAAGAAACTTGTTTGAAGAAGGAGTTCGACGGGGTTCACT AGCAGCTGGTGCTATGGCAATATTTGCTGCCATTACTTCACCTCTTCTCC CACCGATCGTGTCTCGAGTTGGACCATACGTTGTGTGGGTATGTGCATTG CTCCTTGCTTGTGTGGGGCTGGCATTGGCCGGTGCTGTCAAGCATCGTAT TGCATCTGTACTGCTTGTTGGACTTGCCGGCCCTGCATGGGCTGTGCTCA ATGCTGTGGTGTTTGCAAGTGTTCGACAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104336:43..471-

>mRNA_M-pyrifera_M_contig104336.924.1 ID=mRNA_M-pyrifera_M_contig104336.924.1|Name=mRNA_M-pyrifera_M_contig104336.924.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig104336:43..471- (Macrocystis pyrifera P11B4 male)
TTGATAGAGAGACTACGACTTGCACCAATAGGAGTTTGGTGGTTGTGCAT
TGCTCAAGTTGTTGCATGGTTGTGTTTGTGGCCTGTGTGGTTGTTCATCT
CTTCATTTTTTGGTGAAGATGTTTATGGAGGAAATCCTGCATCTCCCATT
GGATCTGAACAAAGAAACTTGTTTGAAGAAGGAGTTCGACGGGGTTCACT
AGCAGCTGGTGCTATGGCAATATTTGCTGCCATTACTTCACCTCTTCTCC
CACCGATCGTGTCTCGAGTTGGACCATACGTTGTGTGGGTATGTGCATTG
CTCCTTGCTTGTGTGGGGCTGGCATTGGCCGGTGCTGTCAAGCATCGTAT
TGCATCTGTACTGCTTGTTGGACTTGCCGGCCCTGCATGGGCTGTGCTCA
ATGCTGTGGTGTTTGCAAGTGTTCGACATTTGATAGAGAGACTACGACTT
GCACCAATAGGAGTTTGGTGGTTGTGCATTGCTCAAGTTGTTGCATGGTT
GTGTTTGTGGCCTGTGTGGTTGTTCATCTCTTCATTTTTTGGTGAAGATG
TTTATGGAGGAAATCCTGCATCTCCCATTGGATCTGAACAAAGAAACTTG
TTTGAAGAAGGAGTTCGACGGGGTTCACTAGCAGCTGGTGCTATGGCAAT
ATTTGCTGCCATTACTTCACCTCTTCTCCCACCGATCGTGTCTCGAGTTG
GACCATACGTTGTGTGGGTATGTGCATTGCTCCTTGCTTGTGTGGGGCTG
GCATTGGCCGGTGCTGTCAAGCATCGTATTGCATCTGTACTGCTTGTTGG
ACTTGCCGGCCCTGCATGGGCTGTGCTCAATGCTGTGGTGTTTGCAAGTG
TTCGACAT
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