mRNA_M-pyrifera_M_contig104209.902.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104209.902.1
Unique NamemRNA_M-pyrifera_M_contig104209.902.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104209.902.1 vs. uniprot
Match: UPI000CF5FF21 (pentapeptide repeat-containing protein n=1 Tax=Pseudoalteromonas sp. T1lg23B TaxID=2077097 RepID=UPI000CF5FF21)

HSP 1 Score: 50.8 bits (120), Expect = 2.510e-5
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:  175 QEERVARAWQALAQKSSGNSGKADASEYLHSKGVELVGIDLSAP 306
            +E R+  AWQ +A ++SGNSGK  A EYL+ +G  L+GID+S P
Sbjct:   39 EESRLMTAWQVVATRASGNSGKIRALEYLNQRGERLMGIDMSPP 82
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104209.902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000CF5FF212.510e-552.27pentapeptide repeat-containing protein n=1 Tax=Pse... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104209contigM-pyrifera_M_contig104209:13..324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.7904668-CDS-M-pyrifera_M_contig104209:12..3241622815548.7904668-CDS-M-pyrifera_M_contig104209:12..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104209 13..324 -
1692277458.927683-CDS-M-pyrifera_M_contig104209:12..3241692277458.927683-CDS-M-pyrifera_M_contig104209:12..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104209 13..324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104209.902.1prot_M-pyrifera_M_contig104209.902.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104209 13..324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104209.902.1

>prot_M-pyrifera_M_contig104209.902.1 ID=prot_M-pyrifera_M_contig104209.902.1|Name=mRNA_M-pyrifera_M_contig104209.902.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
PEARRNSNARGKIEQFAHWLERRPINQVVFAFLGVFGLLSVAGVFATALG
VGLQYLSMQEERVARAWQALAQKSSGNSGKADASEYLHSKGVELVGIDLS
APRK
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mRNA from alignment at M-pyrifera_M_contig104209:13..324-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104209.902.1 ID=mRNA_M-pyrifera_M_contig104209.902.1|Name=mRNA_M-pyrifera_M_contig104209.902.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig104209:13..324- (Macrocystis pyrifera P11B4 male)
CCTGAGGCTCGGCGGAATTCGAACGCGCGCGGAAAGATCGAACAATTTGC
CCACTGGCTTGAGCGACGGCCAATCAATCAAGTTGTGTTTGCATTTTTAG
GTGTGTTTGGGCTTCTGTCTGTCGCAGGCGTTTTTGCGACAGCTTTGGGA
GTTGGTCTCCAATATCTCTCCATGCAAGAAGAAAGAGTGGCTCGAGCCTG
GCAGGCGCTTGCTCAGAAGTCATCCGGGAATAGCGGCAAGGCTGACGCTA
GTGAGTATCTACACAGCAAAGGGGTTGAACTTGTTGGCATCGATTTGAGT
GCACCGCGGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104209:13..324-

>mRNA_M-pyrifera_M_contig104209.902.1 ID=mRNA_M-pyrifera_M_contig104209.902.1|Name=mRNA_M-pyrifera_M_contig104209.902.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig104209:13..324- (Macrocystis pyrifera P11B4 male)
CCTGAGGCTCGGCGGAATTCGAACGCGCGCGGAAAGATCGAACAATTTGC
CCACTGGCTTGAGCGACGGCCAATCAATCAAGTTGTGTTTGCATTTTTAG
GTGTGTTTGGGCTTCTGTCTGTCGCAGGCGTTTTTGCGACAGCTTTGGGA
GTTGGTCTCCAATATCTCTCCATGCAAGAAGAAAGAGTGGCTCGAGCCTG
GCAGGCGCTTGCTCAGAAGTCATCCGGGAATAGCGGCAAGGCTGACGCTA
GTGAGTATCTACACAGCAAAGGGGTTGAACTTGTTGGCATCGATTTGAGT
GCACCGCGGAAGCCTGAGGCTCGGCGGAATTCGAACGCGCGCGGAAAGAT
CGAACAATTTGCCCACTGGCTTGAGCGACGGCCAATCAATCAAGTTGTGT
TTGCATTTTTAGGTGTGTTTGGGCTTCTGTCTGTCGCAGGCGTTTTTGCG
ACAGCTTTGGGAGTTGGTCTCCAATATCTCTCCATGCAAGAAGAAAGAGT
GGCTCGAGCCTGGCAGGCGCTTGCTCAGAAGTCATCCGGGAATAGCGGCA
AGGCTGACGCTAGTGAGTATCTACACAGCAAAGGGGTTGAACTTGTTGGC
ATCGATTTGAGTGCACCGCGGAAG
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