mRNA_M-pyrifera_M_contig104135.893.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104135.893.1
Unique NamemRNA_M-pyrifera_M_contig104135.893.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104135.893.1 vs. uniprot
Match: A0A5A8E390_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E390_CAFRO)

HSP 1 Score: 173 bits (438), Expect = 2.950e-46
Identity = 100/221 (45.25%), Postives = 122/221 (55.20%), Query Frame = 1
Query:   55 ISMERPVQSGWRAEDVGEETESWTITRHDSHLSRREQYVRSGHAGLVFGDGAPHRRFFSDIKTRTPSGDHNVTRGKILAGQLMFVPSSNPPLSLISRANTVANPNNPSASVHAAPSSPRLSTTGSG--GYG--------DGDVWNRGEVGGSGRYFWYVEHDA--PGFEGR---------------------SRGGVCGCSTNDFITWKNEGVMFHFENIS 618
            + M RPVQSGW   D+GE++  W ITRH++H+SRR  Y    H G+VFGDGAPHRRF  DIKT    GDHN T G I A  ++FVP  +PP  L++RA T A          A+    RLS +  G  GYG        DG     G  G +GRY+WY EHD+  PG  GR                     SRGGV  CSTND + W+NEG+M+ FENIS
Sbjct: 1212 LRMSRPVQSGWLLSDIGEDSFDWEITRHENHVSRRPVYTHESHGGIVFGDGAPHRRFHRDIKTVAADGDHNATHGAIHAAAMLFVPGDSPPRDLLARAMTTAGSMRGEWGA-ASTEQARLSDSQGGREGYGSIQSIDGRDGFGGPPGFGGLTGRYYWYGEHDSITPGLAGRDVSHLIPPSQAENDGLQHPLVSRGGVAACSTNDLLVWRNEGIMYRFENIS 1431          
BLAST of mRNA_M-pyrifera_M_contig104135.893.1 vs. uniprot
Match: A0A7S2GBC0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GBC0_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.180e-27
Identity = 72/206 (34.95%), Postives = 112/206 (54.37%), Query Frame = 1
Query:   28 DRVEFAAAKIS-----MERPVQSGWRAEDVGEETESWTITRHDSHLSRREQYVRSGHAGLVFGDGAPHRRFFSDIKTRTPSGDHNVTRGKILAGQLMFVPSSNPPLSLISRANTVANPNNPSASVHAAPSSPRLSTTGSGGYGDGDVWNRG----EVGGSGRYFWYVEHDAPGFEGRSRGGVCGCSTNDFITWKNEGVMFHFENIS 618
            D ++F A +++     M+RP+Q+GW+AED+GE + +  + RH SH+++R+ Y  +   GLV  DG  HR F SDI+ R  +GD +   G + AG L++V  +      +    T    ++ +A+ H  PS+ R      G  GDG     G    + G SG Y+WY EH          GG+   ST+D +TW+NEG+M H+ NI+
Sbjct:  370 DTMDFRAPEVTRRGVKMDRPMQTGWKAEDIGERSYNHPMQRHVSHITKRDIYDYNN-GGLVPFDGDGHRAFNSDIRQRFANGDRHEKMGGLKAGALLYVAGTKVSDETLRTVVTSQTVDHATAADHVLPSA-RHQAWSFGARGDGATDLNGNHNADAGSSGTYYWYGEHSFKAGAAHELGGIACASTDDLVTWRNEGIMLHYANIT 573          
BLAST of mRNA_M-pyrifera_M_contig104135.893.1 vs. uniprot
Match: A0A8K1CG07_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG07_PYTOL)

HSP 1 Score: 76.6 bits (187), Expect = 1.090e-12
Identity = 53/190 (27.89%), Postives = 89/190 (46.84%), Query Frame = 1
Query:   55 ISMERPVQSGWRAEDVGEETESWTITRHDSHLSRREQYVRSGHAGLVFGDGAPHRRFFSDIKTRTPSGDHNVTRGKILAGQLMFVPSSNPPLSLISRANTVANPNNPSASVHAAPSSPRLSTTGSGGYGDGDVWNRGEVGGSGRYFWYVE--HDAPGFEGRSRGGVCGCSTNDFITWKNEGVMFHFENIS 618
            ++  R ++  W AE  G  T    +T+H+SHLS+RE Y       L F DGAPHR F +D++          ++ ++ A + +   +    L  +S+ +++         +H   +  R +T          + + G        +WY E  + A GF     GGV  CST ++I W+NEG+M HF N++
Sbjct:  940 VTKTRSLRKLWPAESRGPATTYHPMTKHESHLSKREVYQYDSGGMLPF-DGAPHRAFLNDVRETESELQDGTSQEELNANEEVITQAETLTLQDVSQDSSIVLSLETGMDLHTLAADQRGTTR--------TIQSHGPT-----IYWYSEIYNTATGF-----GGVGACSTLNYIDWRNEGIMLHFVNLT 1110          
BLAST of mRNA_M-pyrifera_M_contig104135.893.1 vs. uniprot
Match: A0A485LP40_9STRA (Aste57867_23574 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LP40_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.600e-10
Identity = 55/179 (30.73%), Postives = 78/179 (43.58%), Query Frame = 1
Query:   85 WRAEDVGEETESWTITRHDSHLSRREQYVRSGHAGLVFGDGAPHRRFFSDIKTRTPSGDHNVTRGKILAGQLMFVPSSNPPLSLISRANTVANPNNPSASVHAAPSSPRLSTTGSGGYGDGDVWNRGEVGGSGRYFWYVEHDAPGFEGRSRGGVCG-CSTNDFITWKNEGVMFHFENIS 618
            W +  VG  T+      H+SHLS+R  Y +  H GLV  DG  HR +F+DI   T     N  +G+I  G+ + V S +P +S++       N    S      PS  +                          FWY E      +    GG  G CST DF+TW+NEG+M H+ N++
Sbjct:  814 WNSNVVGPVTKFAPKISHESHLSKRPVY-QYNHGGLVPNDGPSHRTYFNDIADPTVYDPTN-DQGQIAQGEFLQV-SISPDVSMVLPLEN--NVEGVSTQETTMPSETQ--------------------------FWYSEIQVLDSQNNVIGGGIGACSTTDFVTWRNEGIMLHYTNLT 961          
BLAST of mRNA_M-pyrifera_M_contig104135.893.1 vs. uniprot
Match: A0A7S0SXR7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXR7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 8.870e-10
Identity = 55/196 (28.06%), Postives = 90/196 (45.92%), Query Frame = 1
Query:   67 RPVQSGWRAEDV-GEETESWTI----TRHDSHLSRREQYVRSGHAGLVFGDGAPHRRFFSDIKTRTPSGDHNVTRGKILAGQLMFVPSS-NPPLSLISRANTVANPNN-----PSASVHAAPSSPRLSTTGSGGYGDGDVWNRGEVGGSGRYFWYVEHDAPGFEGRS-RGGVCGCSTNDFITWKNEGVMFHFENIS 618
            +P+Q  W  ++V G ++  +T+     RH +HL            G V  DG      + DIK +   GD+ +++GK+ AG L+++ +S     +   R++T+ +PN      P  +V              GG GDG            RYF+Y+E+        S  GG+  CS  D  +W+ EG++FH+ NIS
Sbjct: 1525 QPIQRAWSFDEVHGGDSNGYTVYKKMMRHYNHLDT---------TGSVPFDGQGAVEDYQDIKLQYSDGDYPLSQGKLHAGALLYITNSLRSAKTPTGRSSTLVSPNGLWYQPPDGTVK-------------GGAGDG------------RYFYYIEYSYNSTLTSSLSGGIAACSAQDLTSWRFEGIVFHYSNIS 1686          
BLAST of mRNA_M-pyrifera_M_contig104135.893.1 vs. uniprot
Match: A0A6G0WAG8_9STRA (EF-hand domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAG8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.820e-8
Identity = 53/179 (29.61%), Postives = 79/179 (44.13%), Query Frame = 1
Query:   85 WRAEDVGEETESWTITRHDSHLSRREQYVRSGHAGLVFGDGAPHRRFFSDIKTRTPSGDHNVTRGKILAGQLMFVPSSNPPLSLISRANTVANPNNPSASVHAAPSSPRLSTTGSGGYGDGDVWNRGEVGGSGRYFWYVEHDAPGFEGRS-RGGVCGCSTNDFITWKNEGVMFHFENIS 618
            W    VG +T+     RH+S +SRR  Y +  + GLV  DG  HR +F+DI+  T   D  V    I  G+++ +  + P  S++    T  N    S    A+P+  +                          FWY E       G+  RGG+  CST D  TW+NEG+M H+ N++
Sbjct:  830 WNPSIVGPQTQFGPKVRHESQVSRRRLY-QYNNGGLVPNDGPAHRLYFNDIQDSTVY-DRAVDEIHIGMGEIIKIAMA-PDASMVFPLET--NVEGVSTRWTASPAETQ--------------------------FWYSEIQVFDASGQVVRGGIGACSTMDMKTWRNEGIMLHYANLT 977          
BLAST of mRNA_M-pyrifera_M_contig104135.893.1 vs. uniprot
Match: W4FFC8_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FFC8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.390e-5
Identity = 44/155 (28.39%), Postives = 69/155 (44.52%), Query Frame = 1
Query:  157 REQYVRSGHAGLVFGDGAPHRRFFSDIKTRTPSGDHNVTRGKILAGQLMFVPSSNPPLSLISRANTVANPNNPSASVHAAPSSPRLSTTGSGGYGDGDVWNRGEVGGSGRYFWYVEHDAPGFEGRSRGGVCG-CSTNDFITWKNEGVMFHFENIS 618
            R     S + GLV  DG  HR +F+DI  R P  D    + ++++G+L+ + S +P +S++    T  N    S++  A P   +                          +WY E      +    GG  G CST D ITW+NEG++ HF N++
Sbjct:  843 RRPVYSSNNGGLVPNDGPGHRVYFNDI--REPVYDAQSDQVELISGELVAI-SISPDVSMVVPLET--NAEGVSSAESALPQQSQ--------------------------YWYSEIQVLNNDSVVVGGGIGACSTTDLITWRNEGIILHFANLT 966          
BLAST of mRNA_M-pyrifera_M_contig104135.893.1 vs. uniprot
Match: K0SJH8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJH8_THAOC)

HSP 1 Score: 54.3 bits (129), Expect = 4.490e-5
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1
Query:  487 YFWYVEHDAPGFEGRSRGGVCGCSTNDFITWKNEGVMFHFENIS 618
            Y WY EHD       SRGG+  CST DF++W+  G+M ++EN++
Sbjct: 1002 YVWYGEHDHFDPSNPSRGGIMSCSTRDFVSWEENGIMLNYENVT 1045          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104135.893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A5A8E390_CAFRO2.950e-4645.25Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A7S2GBC0_9STRA1.180e-2734.95Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8K1CG07_PYTOL1.090e-1227.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LP40_9STRA2.600e-1030.73Aste57867_23574 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S0SXR7_9STRA8.870e-1028.06Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A6G0WAG8_9STRA1.820e-829.61EF-hand domain-containing protein n=1 Tax=Aphanomy... [more]
W4FFC8_9STRA3.390e-528.39Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
K0SJH8_THAOC4.490e-545.45Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104135contigM-pyrifera_M_contig104135:4..621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog159749.K0SJH8
Hectar predicted targeting categoryother localisation
EggNOG OGs28K2B@1,2QSGV@2759,2XF1H@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size618
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.2592208-CDS-M-pyrifera_M_contig104135:3..6211622815548.2592208-CDS-M-pyrifera_M_contig104135:3..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104135 4..621 -
1692277458.7141783-CDS-M-pyrifera_M_contig104135:3..6211692277458.7141783-CDS-M-pyrifera_M_contig104135:3..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104135 4..621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104135.893.1prot_M-pyrifera_M_contig104135.893.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104135 4..621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104135.893.1

>prot_M-pyrifera_M_contig104135.893.1 ID=prot_M-pyrifera_M_contig104135.893.1|Name=mRNA_M-pyrifera_M_contig104135.893.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=206bp
TPLDRERAVDRVEFAAAKISMERPVQSGWRAEDVGEETESWTITRHDSHL
SRREQYVRSGHAGLVFGDGAPHRRFFSDIKTRTPSGDHNVTRGKILAGQL
MFVPSSNPPLSLISRANTVANPNNPSASVHAAPSSPRLSTTGSGGYGDGD
VWNRGEVGGSGRYFWYVEHDAPGFEGRSRGGVCGCSTNDFITWKNEGVMF
HFENIS
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mRNA from alignment at M-pyrifera_M_contig104135:4..621-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104135.893.1 ID=mRNA_M-pyrifera_M_contig104135.893.1|Name=mRNA_M-pyrifera_M_contig104135.893.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig104135:4..621- (Macrocystis pyrifera P11B4 male)
ACTCCATTGGATCGTGAACGCGCTGTGGATCGTGTAGAGTTTGCAGCTGC CAAGATTTCCATGGAACGCCCTGTGCAATCAGGGTGGCGTGCGGAGGATG TGGGGGAGGAAACAGAATCATGGACCATTACACGCCACGACTCTCATCTG AGTCGTCGTGAACAGTATGTTCGTTCTGGTCATGCTGGGTTGGTGTTTGG AGATGGTGCTCCTCATCGTCGCTTCTTTTCTGACATCAAAACGAGAACCC CTTCTGGAGACCATAATGTCACTCGTGGCAAGATTCTTGCTGGACAGCTC ATGTTTGTTCCATCGTCCAACCCTCCTCTCTCCCTCATATCCCGTGCCAA CACTGTTGCCAACCCAAACAACCCTTCTGCCTCTGTCCACGCAGCTCCTT CATCTCCACGTCTGTCCACCACTGGTTCTGGTGGGTATGGTGATGGAGAT GTTTGGAACCGTGGGGAGGTAGGTGGGAGTGGGAGGTATTTTTGGTATGT GGAGCATGATGCTCCCGGGTTTGAAGGGAGGAGTAGAGGTGGGGTGTGTG GTTGTTCTACCAATGATTTTATTACTTGGAAGAATGAGGGTGTGATGTTT CATTTTGAAAACATTTCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104135:4..621-

>mRNA_M-pyrifera_M_contig104135.893.1 ID=mRNA_M-pyrifera_M_contig104135.893.1|Name=mRNA_M-pyrifera_M_contig104135.893.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1236bp|location=Sequence derived from alignment at M-pyrifera_M_contig104135:4..621- (Macrocystis pyrifera P11B4 male)
ACTCCATTGGATCGTGAACGCGCTGTGGATCGTGTAGAGTTTGCAGCTGC
CAAGATTTCCATGGAACGCCCTGTGCAATCAGGGTGGCGTGCGGAGGATG
TGGGGGAGGAAACAGAATCATGGACCATTACACGCCACGACTCTCATCTG
AGTCGTCGTGAACAGTATGTTCGTTCTGGTCATGCTGGGTTGGTGTTTGG
AGATGGTGCTCCTCATCGTCGCTTCTTTTCTGACATCAAAACGAGAACCC
CTTCTGGAGACCATAATGTCACTCGTGGCAAGATTCTTGCTGGACAGCTC
ATGTTTGTTCCATCGTCCAACCCTCCTCTCTCCCTCATATCCCGTGCCAA
CACTGTTGCCAACCCAAACAACCCTTCTGCCTCTGTCCACGCAGCTCCTT
CATCTCCACGTCTGTCCACCACTGGTTCTGGTGGGTATGGTGATGGAGAT
GTTTGGAACCGTGGGGAGGTAGGTGGGAGTGGGAGGTATTTTTGGTATGT
GGAGCATGATGCTCCCGGGTTTGAAGGGAGGAGTAGAGGTGGGGTGTGTG
GTTGTTCTACCAATGATTTTATTACTTGGAAGAATGAGGGTGTGATGTTT
CATTTTGAAAACATTTCAACTCCATTGGATCGTGAACGCGCTGTGGATCG
TGTAGAGTTTGCAGCTGCCAAGATTTCCATGGAACGCCCTGTGCAATCAG
GGTGGCGTGCGGAGGATGTGGGGGAGGAAACAGAATCATGGACCATTACA
CGCCACGACTCTCATCTGAGTCGTCGTGAACAGTATGTTCGTTCTGGTCA
TGCTGGGTTGGTGTTTGGAGATGGTGCTCCTCATCGTCGCTTCTTTTCTG
ACATCAAAACGAGAACCCCTTCTGGAGACCATAATGTCACTCGTGGCAAG
ATTCTTGCTGGACAGCTCATGTTTGTTCCATCGTCCAACCCTCCTCTCTC
CCTCATATCCCGTGCCAACACTGTTGCCAACCCAAACAACCCTTCTGCCT
CTGTCCACGCAGCTCCTTCATCTCCACGTCTGTCCACCACTGGTTCTGGT
GGGTATGGTGATGGAGATGTTTGGAACCGTGGGGAGGTAGGTGGGAGTGG
GAGGTATTTTTGGTATGTGGAGCATGATGCTCCCGGGTTTGAAGGGAGGA
GTAGAGGTGGGGTGTGTGGTTGTTCTACCAATGATTTTATTACTTGGAAG
AATGAGGGTGTGATGTTTCATTTTGAAAACATTTCA
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