mRNA_M-pyrifera_M_contig10412.889.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10412.889.1
Unique NamemRNA_M-pyrifera_M_contig10412.889.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10412.889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10412contigM-pyrifera_M_contig10412:6327..6914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size588
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10412.889.1prot_M-pyrifera_M_contig10412.889.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10412 6337..6672 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.0135472-UTR-M-pyrifera_M_contig10412:6326..63361622815548.0135472-UTR-M-pyrifera_M_contig10412:6326..6336Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10412 6327..6336 +
1692277458.6269944-UTR-M-pyrifera_M_contig10412:6326..63361692277458.6269944-UTR-M-pyrifera_M_contig10412:6326..6336Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10412 6327..6336 +
1622815548.041476-UTR-M-pyrifera_M_contig10412:6672..69141622815548.041476-UTR-M-pyrifera_M_contig10412:6672..6914Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10412 6673..6914 +
1692277458.6457062-UTR-M-pyrifera_M_contig10412:6672..69141692277458.6457062-UTR-M-pyrifera_M_contig10412:6672..6914Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10412 6673..6914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.0264277-CDS-M-pyrifera_M_contig10412:6336..66721622815548.0264277-CDS-M-pyrifera_M_contig10412:6336..6672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10412 6337..6672 +
1692277458.6368606-CDS-M-pyrifera_M_contig10412:6336..66721692277458.6368606-CDS-M-pyrifera_M_contig10412:6336..6672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10412 6337..6672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10412.889.1

>prot_M-pyrifera_M_contig10412.889.1 ID=prot_M-pyrifera_M_contig10412.889.1|Name=mRNA_M-pyrifera_M_contig10412.889.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MHRAGILGRSSRGLREAGSPLVEGNAANPLRQHARTGLGGSRGGGFLASI
HVHHDGMFFSSCFRAMALCVVFSTTEEGGTSEEVECPWCAQDAFFSGGIW
EFCPGADGPAP*
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mRNA from alignment at M-pyrifera_M_contig10412:6327..6914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10412.889.1 ID=mRNA_M-pyrifera_M_contig10412.889.1|Name=mRNA_M-pyrifera_M_contig10412.889.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig10412:6327..6914+ (Macrocystis pyrifera P11B4 male)
TGAAACCCGAATGCACAGGGCTGGCATACTGGGTAGATCGAGTCGCGGAC
TGCGCGAAGCGGGATCCCCTTTGGTAGAAGGTAATGCGGCGAACCCGCTC
AGGCAACACGCCCGCACAGGCCTAGGAGGGTCTCGCGGTGGAGGTTTTCT
TGCCAGCATTCATGTCCATCACGACGGCATGTTTTTTTCTTCGTGTTTTC
GCGCGATGGCACTGTGTGTGGTATTTTCGACGACCGAAGAAGGTGGCACA
AGCGAGGAGGTCGAGTGTCCATGGTGCGCCCAGGATGCGTTTTTTTCGGG
CGGGATCTGGGAATTCTGCCCAGGTGCCGATGGACCAGCCCCGTAGCAAA
ATCAAGTTTTTAAGTCATTCGACCGGATACTGTAGCGCTGCAGGCTTGAG
ACGGGCCTGGTCTCATTCGTCTTTTTTGTATGTACCTGCTTTCACTGTGA
ATCATGTGTGTCAGATGTGTTTTTTCTAGCGAACTTTGCTTTTGCGCAGT
CAAAGCACCTGGCGGCCCCAGACGGCGTGCAGGTCCCGCAGGTGCGGGCA
CGTGACATTTGACACATGAGTTACTGCTGTAATCAACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10412:6327..6914+

>mRNA_M-pyrifera_M_contig10412.889.1 ID=mRNA_M-pyrifera_M_contig10412.889.1|Name=mRNA_M-pyrifera_M_contig10412.889.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig10412:6327..6914+ (Macrocystis pyrifera P11B4 male)
ATGCACAGGGCTGGCATACTGGGTAGATCGAGTCGCGGACTGCGCGAAGC
GGGATCCCCTTTGGTAGAAGGTAATGCGGCGAACCCGCTCAGGCAACACG
CCCGCACAGGCCTAGGAGGGTCTCGCGGTGGAGGTTTTCTTGCCAGCATT
CATGTCCATCACGACGGCATGTTTTTTTCTTCGTGTTTTCGCGCGATGGC
ACTGTGTGTGGTATTTTCGACGACCGAAGAAGGTGGCACAAGCGAGGAGG
TCGAGTGTCCATGGTGCGCCCAGGATGCGTTTTTTTCGGGCGGGATCTGG
GAATTCTGCCCAGGTGCCGATGGACCAGCCCCGTAGATGCACAGGGCTGG
CATACTGGGTAGATCGAGTCGCGGACTGCGCGAAGCGGGATCCCCTTTGG
TAGAAGGTAATGCGGCGAACCCGCTCAGGCAACACGCCCGCACAGGCCTA
GGAGGGTCTCGCGGTGGAGGTTTTCTTGCCAGCATTCATGTCCATCACGA
CGGCATGTTTTTTTCTTCGTGTTTTCGCGCGATGGCACTGTGTGTGGTAT
TTTCGACGACCGAAGAAGGTGGCACAAGCGAGGAGGTCGAGTGTCCATGG
TGCGCCCAGGATGCGTTTTTTTCGGGCGGGATCTGGGAATTCTGCCCAGG
TGCCGATGGACCAGCCCCGTAG
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