mRNA_M-pyrifera_M_contig103657.782.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103657.782.1
Unique NamemRNA_M-pyrifera_M_contig103657.782.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig103657.782.1 vs. uniprot
Match: A0A7S4V028_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A7S4V028_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.270e-31
Identity = 53/65 (81.54%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 MDRYQKLDRVGHGTYGIVYKAKDRVTGDIVALKRIRLETEDEGIPSTAIREIALLKELQHTNIVR 195
            M+RYQK+D++G GTYG+VYKAKDRVTG+I+ALK+IRLE EDEGIPSTAIREI+LLKELQH NIVR
Sbjct:    1 MERYQKMDKIGEGTYGVVYKAKDRVTGEIIALKKIRLEAEDEGIPSTAIREISLLKELQHPNIVR 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig103657.782.1 vs. uniprot
Match: A0A482RGB5_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RGB5_9ARCH)

HSP 1 Score: 112 bits (280), Expect = 3.210e-31
Identity = 53/65 (81.54%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 MDRYQKLDRVGHGTYGIVYKAKDRVTGDIVALKRIRLETEDEGIPSTAIREIALLKELQHTNIVR 195
            M+RYQKL++VG GTYG+VYKAKDR+TG+IVALK+IRLE EDEGIP TAIREI+LLKELQH NIVR
Sbjct:    1 MERYQKLEKVGEGTYGVVYKAKDRMTGEIVALKKIRLEAEDEGIPGTAIREISLLKELQHPNIVR 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig103657.782.1 vs. uniprot
Match: A0A0W8DKM9_PHYNI (Vegetative incompatibility protein HET-E-1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKM9_PHYNI)

HSP 1 Score: 114 bits (284), Expect = 1.890e-30
Identity = 52/65 (80.00%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 MDRYQKLDRVGHGTYGIVYKAKDRVTGDIVALKRIRLETEDEGIPSTAIREIALLKELQHTNIVR 195
            M+RYQKL+++G GTYG+VYKAKDRVTG+++ALK+IRLE EDEGIPSTAIREI+LLKELQH NIVR
Sbjct:    1 MERYQKLEKIGEGTYGVVYKAKDRVTGEVIALKKIRLEAEDEGIPSTAIREISLLKELQHCNIVR 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig103657.782.1 vs. uniprot
Match: A0A7S2KWG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KWG0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.050e-30
Identity = 51/65 (78.46%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 MDRYQKLDRVGHGTYGIVYKAKDRVTGDIVALKRIRLETEDEGIPSTAIREIALLKELQHTNIVR 195
            M+RYQK++++G GTYGIVYKA+DRV+G+I+ALK+IRLE EDEGIPSTAIREI+LLKELQH NIVR
Sbjct:    1 MERYQKMEKIGEGTYGIVYKARDRVSGEIIALKKIRLEAEDEGIPSTAIREISLLKELQHPNIVR 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig103657.782.1 vs. uniprot
Match: A0A482S6Z6_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6Z6_9ARCH)

HSP 1 Score: 108 bits (271), Expect = 5.770e-30
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 MDRYQKLDRVGHGTYGIVYKAKDRVTGDIVALKRIRLETEDEGIPSTAIREIALLKELQHTNIVR 195
            M+RYQKL+++G GTYG+VYKAKD+ TG IVALKRIRLE EDEGIPSTAIREI+LLKEL+H NIVR
Sbjct:    1 MERYQKLEKIGEGTYGVVYKAKDKKTGIIVALKRIRLEAEDEGIPSTAIREISLLKELKHPNIVR 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig103657.782.1 vs. uniprot
Match: X6PCU8_RETFI (Cyclin dependent kinase n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6PCU8_RETFI)

HSP 1 Score: 110 bits (276), Expect = 6.010e-30
Identity = 51/64 (79.69%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    4 DRYQKLDRVGHGTYGIVYKAKDRVTGDIVALKRIRLETEDEGIPSTAIREIALLKELQHTNIVR 195
            DR+QKLD++G GTYGIVYKAKD++TGD++ALK+IRLE EDEGIPSTAIREIALLK+LQH NIV+
Sbjct:    4 DRFQKLDKIGEGTYGIVYKAKDKLTGDVLALKKIRLEAEDEGIPSTAIREIALLKQLQHGNIVK 67
[Close]
BLAST of mRNA_M-pyrifera_M_contig103657.782.1 vs. uniprot
Match: A0A6S9B9I0_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9B9I0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.520e-30
Identity = 53/65 (81.54%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 MDRYQKLDRVGHGTYGIVYKAKDRVTGDIVALKRIRLETEDEGIPSTAIREIALLKELQHTNIVR 195
            M+RYQK+D++G GTYG+VYKAKDRVTG+I+ALK+IRLE EDEGIPSTAIREI+LLKELQH NIVR
Sbjct:    1 MERYQKMDKIGEGTYGVVYKAKDRVTGEIIALKKIRLEAEDEGIPSTAIREISLLKELQHPNIVR 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig103657.782.1 vs. uniprot
Match: A0A1V9ZF47_9STRA (Cell division protein kinase (Fragment) n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZF47_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.170e-29
Identity = 54/65 (83.08%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 MDRYQKLDRVGHGTYGIVYKAKDRVTGDIVALKRIRLETEDEGIPSTAIREIALLKELQHTNIVR 195
            M+RYQKL++VG GTYG+VYKAKDRVTG+I+ALK+IRLE EDEGIPSTAIREI+LLKELQH+NIVR
Sbjct:   34 MERYQKLEKVGEGTYGVVYKAKDRVTGEIIALKKIRLEAEDEGIPSTAIREISLLKELQHSNIVR 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig103657.782.1 vs. uniprot
Match: A0A6G0X0B6_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0B6_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.180e-29
Identity = 52/65 (80.00%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 MDRYQKLDRVGHGTYGIVYKAKDRVTGDIVALKRIRLETEDEGIPSTAIREIALLKELQHTNIVR 195
            M+RYQKL+++G GTYGIVYKAKDRVTG+++ALK+IRLE EDEGIPSTAIREI+LLKELQH+NI+R
Sbjct:    1 MERYQKLEKIGEGTYGIVYKAKDRVTGEVIALKKIRLEAEDEGIPSTAIREISLLKELQHSNIIR 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig103657.782.1 vs. uniprot
Match: A0A7S2C9K4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9K4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.630e-29
Identity = 53/65 (81.54%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 MDRYQKLDRVGHGTYGIVYKAKDRVTGDIVALKRIRLETEDEGIPSTAIREIALLKELQHTNIVR 195
            M+RYQKLD++G GTYG+VYKAKD+VTG+I+ALK+IRLE EDEGIPSTAIREI+LLKELQH NIVR
Sbjct:    1 MERYQKLDKIGEGTYGVVYKAKDKVTGEIIALKKIRLEAEDEGIPSTAIREISLLKELQHPNIVR 65
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103657.782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4V028_9STRA2.270e-3181.54Hypothetical protein n=2 Tax=Mediophyceae TaxID=58... [more]
A0A482RGB5_9ARCH3.210e-3181.54Protein kinase domain-containing protein n=1 Tax=a... [more]
A0A0W8DKM9_PHYNI1.890e-3080.00Vegetative incompatibility protein HET-E-1 n=1 Tax... [more]
A0A7S2KWG0_9STRA2.050e-3078.46Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A482S6Z6_9ARCH5.770e-3080.00Protein kinase domain-containing protein n=1 Tax=a... [more]
X6PCU8_RETFI6.010e-3079.69Cyclin dependent kinase n=1 Tax=Reticulomyxa filos... [more]
A0A6S9B9I0_9STRA8.520e-3081.54Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A1V9ZF47_9STRA1.170e-2983.08Cell division protein kinase (Fragment) n=6 Tax=Sa... [more]
A0A6G0X0B6_9STRA1.180e-2980.00Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A7S2C9K4_9STRA1.630e-2981.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103657contigM-pyrifera_M_contig103657:389..583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue9e-24
Seed eggNOG ortholog112098.XP_008620322.1
Preferred nameCRK
KEGG koko:K02090,ko:K04563
KEGG Pathwayko04011,ko04111,ko04113,ko04360,ko05010,ko05030,map04011,map04111,map04113,map04360,map05010,map05030
KEGG ModuleM00692,M00693
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the protein kinase superfamily
EggNOG OGsKOG0662@1,KOG0662@2759
Ec32 ortholog descriptionputative 34kDa cdc2-related protein kinase
Ec32 orthologEc-04_005630.1
EC2.7.11.22
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko04131
Exons1
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.7574167-CDS-M-pyrifera_M_contig103657:388..5831622815542.7574167-CDS-M-pyrifera_M_contig103657:388..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103657 389..583 -
1692277456.4175127-CDS-M-pyrifera_M_contig103657:388..5831692277456.4175127-CDS-M-pyrifera_M_contig103657:388..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103657 389..583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103657.782.1prot_M-pyrifera_M_contig103657.782.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103657 389..583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103657.782.1

>prot_M-pyrifera_M_contig103657.782.1 ID=prot_M-pyrifera_M_contig103657.782.1|Name=mRNA_M-pyrifera_M_contig103657.782.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
MDRYQKLDRVGHGTYGIVYKAKDRVTGDIVALKRIRLETEDEGIPSTAIR
EIALLKELQHTNIVR
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mRNA from alignment at M-pyrifera_M_contig103657:389..583-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103657.782.1 ID=mRNA_M-pyrifera_M_contig103657.782.1|Name=mRNA_M-pyrifera_M_contig103657.782.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig103657:389..583- (Macrocystis pyrifera P11B4 male)
ATGGATCGATACCAAAAATTGGATCGTGTGGGGCACGGCACGTATGGAAT
CGTGTACAAGGCCAAGGATCGTGTCACTGGGGACATTGTTGCTCTGAAAA
GAATTCGATTGGAGACGGAGGATGAAGGGATTCCCTCGACAGCGATTCGT
GAAATCGCTCTCCTCAAAGAACTGCAACATACCAACATTGTTCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103657:389..583-

>mRNA_M-pyrifera_M_contig103657.782.1 ID=mRNA_M-pyrifera_M_contig103657.782.1|Name=mRNA_M-pyrifera_M_contig103657.782.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig103657:389..583- (Macrocystis pyrifera P11B4 male)
ATGGATCGATACCAAAAATTGGATCGTGTGGGGCACGGCACGTATGGAAT
CGTGTACAAGGCCAAGGATCGTGTCACTGGGGACATTGTTGCTCTGAAAA
GAATTCGATTGGAGACGGAGGATGAAGGGATTCCCTCGACAGCGATTCGT
GAAATCGCTCTCCTCAAAGAACTGCAACATACCAACATTGTTCGGATGGA
TCGATACCAAAAATTGGATCGTGTGGGGCACGGCACGTATGGAATCGTGT
ACAAGGCCAAGGATCGTGTCACTGGGGACATTGTTGCTCTGAAAAGAATT
CGATTGGAGACGGAGGATGAAGGGATTCCCTCGACAGCGATTCGTGAAAT
CGCTCTCCTCAAAGAACTGCAACATACCAACATTGTTCGG
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