mRNA_M-pyrifera_M_contig103402.721.1 (mRNA) Macrocystis pyrifera P11B4 male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A7S1GVM4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GVM4_HEMAN) HSP 1 Score: 90.9 bits (224), Expect = 7.450e-21 Identity = 49/111 (44.14%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 10 ESTWQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAPSA-EYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVT 339 E TW CP C + R +K + AP L+V LKRF H S K + V FPLH L+L+P++ +PS Y+L GV H GS GHYTA K P Q+W L +D SV+ Sbjct: 24 EDTWYCPKCKQHQRASKTMALWTAPSNLVVHLKRFSHEESWRREKLDTHVEFPLHGLDLSPYVRCPSPSPLVYDLCGVTNHFGSTHGGHYTAYCKSPVDQKWHLFDDSSVS 134
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A1G4KN19_9SACH (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lachancea nothofagi CBS 11611 TaxID=1266666 RepID=A0A1G4KN19_9SACH) HSP 1 Score: 92.0 bits (227), Expect = 1.750e-19 Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1 Query: 25 CPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFL----VPTAPSAEYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345 CP+CG P K+ I K PP+L++ LKRF HL +GT K N V FP + LN+TPF T P YELV V+ H GS+ +GHYT+ K P + W+ ND V I Sbjct: 325 CPNCGSIQNPIKQMTIAKLPPVLVLQLKRFEHLMTGTSVKLNDFVEFPAY-LNMTPFCHRDETRTMPDIVYELVAVISHEGSVNQGHYTSMCKIPGGK-WFRFNDSMVVSI 433
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A1G4IYY8_9SACH (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lachancea dasiensis TaxID=1072105 RepID=A0A1G4IYY8_9SACH) HSP 1 Score: 83.2 bits (204), Expect = 2.580e-16 Identity = 48/113 (42.48%), Postives = 64/113 (56.64%), Query Frame = 1 Query: 19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAPSAE----YELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345 ++C SC P K+ I K PP++++ LKRF HL SGT K N V FP + LN+TP+ + S YELV V+ H GS+ +GHYT+ K P Q W+ ND V I Sbjct: 323 YKCSSCESVRNPIKQMNIAKLPPVMVLQLKRFEHLMSGTSVKLNDPVHFPAY-LNMTPYCHQDSSSGMPVIIYELVAVISHEGSVNQGHYTSMCKIPGGQ-WFRFNDSMVVTI 433
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A0L0S8D5_ALLM3 (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S8D5_ALLM3) HSP 1 Score: 79.0 bits (193), Expect = 9.000e-15 Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 1 Query: 19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAP-SAEYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345 + CP C ++ R +KR + +APP+L+V LKRF L + K + V FP+ HL+L+ + TAP A Y+LV VV+H GSL GHYTA V++ + W+ ND +V + Sbjct: 484 YHCPRCQRRERSSKRLQVHRAPPVLVVHLKRFASLRA----KLSVPVDFPVDHLDLS--VAATAPVPATYKLVAVVQHYGSLAMGHYTATVRR-SGDRWFKANDSTVLQV 586
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: E4XT03_OIKDI (USP domain-containing protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4XT03_OIKDI) HSP 1 Score: 77.8 bits (190), Expect = 1.760e-14 Identity = 42/122 (34.43%), Postives = 66/122 (54.10%), Query Frame = 1 Query: 19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLY-----KNNRIVTFPLHHLNLTPFLVPTAPSAE-----YELVGVVKHVGSLQRGHYTAAVKQPTSQE---WWLCNDDSVTPI 345 W C SC + K+ + K P +L+ LKRFH+ S + Y K N++V + + +L+++PF++ + YEL GVV H+GS+ GHYTA VK P ++ W L +D V + Sbjct: 193 WYCGSCKEHVAAQKQLTLWKLPKVLIFHLKRFHYRQSNSHYSIRRDKINKLVDYQVENLDMSPFVIDPKEACNGVPPNYELCGVVNHMGSMSFGHYTAYVKHPDKKDESKWRLADDSHVRDV 314
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A6P6Y7S0_DERPT (Ubiquitinyl hydrolase 1 n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6Y7S0_DERPT) HSP 1 Score: 77.0 bits (188), Expect = 4.470e-14 Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 1 Query: 19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKN--NRIVTFPLHHLNLTPFLV--PTAPSAEYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345 W CP C K +K+ I P L++ LKRF + L+++ N +V FP+ +L+++P+++ P S Y+L+ V H G L GHYTA K S W+L +D SVTPI Sbjct: 1020 WYCPRCKKHQMASKKFDIWSLPNNLIIHLKRFSY---SRLHRDKLNVLVEFPIENLDMSPYVLHNPNKESLVYDLIAVSNHYGELGAGHYTAYAKNFQSNNWYLFDDYSVTPI 1129
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: A0A0L0TAT2_ALLM3 (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0TAT2_ALLM3) HSP 1 Score: 75.5 bits (184), Expect = 1.400e-13 Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1 Query: 19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAPSAEYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345 + CP C ++ R +KR + +APP+L+V LKRF L + K + V FP+ L+L+ P+A Y+LV VV+H GSL GHYTA V++ W+ ND +V + Sbjct: 336 YHCPRCQRRERSSKRLQVHRAPPVLVVHLKRFASLRA----KLSVPVDFPVDRLDLSVAATAPVPAA-YKLVAVVQHYGSLAMGHYTATVRR-AGDRWFKANDSTVMQV 438
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: UPI000719A443 (uncharacterized protein LOC106807940 isoform X1 n=2 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719A443) HSP 1 Score: 75.1 bits (183), Expect = 2.040e-13 Identity = 42/109 (38.53%), Postives = 56/109 (51.38%), Query Frame = 1 Query: 19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAPSAE--YELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVT 339 W CP C + R K I + PP L++ LKRF +L K V FPL L+L+ F+ T + Y+L V H G GHYT+ K S EW+ CNDD++T Sbjct: 374 WYCPQCQQNQRAEKTMTIWRYPPTLIIYLKRFVFYDLTSL-KLEDTVLFPLEQLDLSQFISATHKENDFVYDLHSCVCHFGGPNAGHYTSYTKHLLSDEWFFCNDDTLT 481
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: UPI001F8EC38C (Ubiquitin carboxyl-terminal hydrolase 15 n=2 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F8EC38C) HSP 1 Score: 74.7 bits (182), Expect = 2.890e-13 Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 1 Query: 19 WQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKN--NRIVTFPLHHLNLTPFLV--PTAPSAEYELVGVVKHVGSLQRGHYTAAVKQPTSQEWWLCNDDSVTPI 345 W CP C K +K+ I P L++ LKRF + L+++ N +V FP+ +L+++P+++ P S Y+L+ V H G L GHYTA K S W+L +D SVTPI Sbjct: 1070 WYCPRCKKHQMASKKFDIWSLPNNLIIHLKRFSY---SRLHRDKLNVLVEFPIENLDMSPYVLHNPNNESFVYDLIAVSNHYGELGAGHYTAYGKNFQSNNWFLFDDYSVTPI 1179
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Match: D8T640_SELML (USP domain-containing protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T640_SELML) HSP 1 Score: 72.8 bits (177), Expect = 7.900e-13 Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 1 Query: 10 ESTWQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNRIVTFPLHHLNLTPFLVPTAPSAEYELVGVVKHVGSLQRGHYTAAVKQPTSQE-----WWLCNDDSV 336 E+ W C +C ++ + KR +I+KAPP+L V LKRF G L K V F LNL+PFL + Y LVGVV+H G+++ GHY A V+ ++ + W+ +D V Sbjct: 191 ENAWGCDNCTRR-KATKRLVIRKAPPVLTVHLKRFAQDMRGRLSKLTGHVAFD-ELLNLSPFLSTSRDGGLYRLVGVVEHSGTMKGGHYVAFVRGGSAGDGKENFWYYISDSDV 302 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103402.721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig103402.721.1 >prot_M-pyrifera_M_contig103402.721.1 ID=prot_M-pyrifera_M_contig103402.721.1|Name=mRNA_M-pyrifera_M_contig103402.721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp ERLESTWQCPSCGKQTRPNKRQLIKKAPPILLVALKRFHHLPSGTLYKNNback to top mRNA from alignment at M-pyrifera_M_contig103402:26..370- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig103402.721.1 ID=mRNA_M-pyrifera_M_contig103402.721.1|Name=mRNA_M-pyrifera_M_contig103402.721.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig103402:26..370- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig103402:26..370- >mRNA_M-pyrifera_M_contig103402.721.1 ID=mRNA_M-pyrifera_M_contig103402.721.1|Name=mRNA_M-pyrifera_M_contig103402.721.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig103402:26..370- (Macrocystis pyrifera P11B4 male)back to top |