mRNA_M-pyrifera_M_contig103367.709.1 (mRNA) Macrocystis pyrifera P11B4 male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: UPI001F4767AB (polysaccharide biosynthesis tyrosine autokinase n=1 Tax=Agromyces marinus TaxID=1389020 RepID=UPI001F4767AB) HSP 1 Score: 55.8 bits (133), Expect = 1.420e-6 Identity = 47/125 (37.60%), Postives = 62/125 (49.60%), Query Frame = 1 Query: 1 LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGS-------ATDAARSPVLERESEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPRSEILDLEISAGSPQEA 354 L DYLRG+R H +A+VL TL G+ G TP Y +S S ++ T G+ ARS V +D VAQ VID LDLD TP QL+ V+ + IL A +P++A Sbjct: 3 LRDYLRGLRRHWIAIVLMTLVGIGAGYGWTLLQTPVYVASASGLVQSTGQGADVGSMSLGDSVARSRVPSYLIIAGWTD-VAQGVIDDLDLDTTPEQLVERVEVTNADGTVILSASAEASTPEDA 126
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: A0A3E0VEH4_9MICO (Chromosome partitioning protein n=1 Tax=Subtercola boreus TaxID=120213 RepID=A0A3E0VEH4_9MICO) HSP 1 Score: 53.5 bits (127), Expect = 9.090e-6 Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 1 Query: 1 LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGSATDAARSPVLERE-----SEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPRSEILDLEISAGSPQEAAETAN 369 L DYLR +R + +V TL G+ L+ P Y +S V + GS ++ ++ + ++V+T+ AV Q VID+L LD + L + S + ++D+ ++ S Q AAE AN Sbjct: 3 LRDYLRVVRKGWVIIVAITLAGVAAASLISIAEVPKYLASSKVFVSAESAGSVSELSQGSSFTQNQVKSYTDVVTTPAVLQPVIDQLGLDISAADLAKQVTASTAVGTVVVDISVTDESAQHAAEIAN 130
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: UPI001E5CEB1B (polysaccharide biosynthesis tyrosine autokinase n=2 Tax=Nocardioides sp. cx-173 TaxID=2898796 RepID=UPI001E5CEB1B) HSP 1 Score: 53.1 bits (126), Expect = 1.240e-5 Identity = 39/123 (31.71%), Postives = 64/123 (52.03%), Query Frame = 1 Query: 1 LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGSATDAARSPVLERE-----SEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPRSEILDLEISAGSPQEA 354 L DYLR +R + + L GL V L+ TP Y SSV + + T S + A S +L ++ ++ TS +A QV++ LDL+ TP +L+ S +P + +L+L ++ P +A Sbjct: 13 LRDYLRVVRRRWGVIAVAALLGLGVAALLTYTATPKYASSVKLYVS-TAQSSTSAALESGLLSQQRIFSYTDFATSRELAAQVVNELDLEVTPGELIGKVSAVVVPDTVVLELTVTDPDPAQA 134
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: UPI00109CBFC4 (Wzz/FepE/Etk N-terminal domain-containing protein n=4 Tax=Microbacterium TaxID=33882 RepID=UPI00109CBFC4) HSP 1 Score: 52.8 bits (125), Expect = 1.480e-5 Identity = 40/124 (32.26%), Postives = 64/124 (51.61%), Query Frame = 1 Query: 1 LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGSATDAARSPVLERESEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPR-SEILDLEISAGSPQEAAETAN 369 LED RG+ + +V T + LVG +F Y + + P V S + + +E E V TS AV ++ ++ DLD T + L +V +PR S++L +++A +PQEAA+ AN Sbjct: 7 LEDLYRGVMQSWMVLVGTIVAFALVGFGIFLIYPQKYTAEAQHTVEPISVLSTGSSFNTVNMETEKVVATSTAVLKRAVE--DLDDTSIEALRNNTVIDVPRNSQVLSFQVTANTPQEAADRAN 128
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: A0A3E0W244_9MICO (Chromosome partitioning protein n=1 Tax=Subtercola boreus TaxID=120213 RepID=A0A3E0W244_9MICO) HSP 1 Score: 51.6 bits (122), Expect = 4.270e-5 Identity = 36/128 (28.12%), Postives = 64/128 (50.00%), Query Frame = 1 Query: 1 LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGSATDAARSPVLERE-----SEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPRSEILDLEISAGSPQEAAETAN 369 L DYLR +R + ++ L G+ +G + TP Y +S V + G+ ++ + + ++++T+ AV Q VI +L L T L + + S + ++D+ +S GSPQ AA+ AN Sbjct: 3 LRDYLRVLRKGWIIILALVLMGVALGSVFSLLSTPMYLASSKVFVSVQSAGTVSELTQGSNFTQNQVKSYADIITTPAVLQPVITQLQLPITAETLASRVTASTATGTVVVDIGVSDGSPQSAADIAN 130
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Match: UPI001CA3FD5E (polysaccharide biosynthesis tyrosine autokinase n=1 Tax=Nocardioides sp. SCSIO 67246 TaxID=2872154 RepID=UPI001CA3FD5E) HSP 1 Score: 51.6 bits (122), Expect = 4.310e-5 Identity = 37/124 (29.84%), Postives = 65/124 (52.42%), Query Frame = 1 Query: 1 LEDYLRGIRSH-KLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVGSATDAARSPVLERESEVLTSDAVAQQVIDRLDLDATPPQLLATASVSFLPRSEILDLEISAGSPQEAAETAN 369 L D+L +R +L VV LG + G+ + A P Y + +++L P +V + + + ++ V+ S VAQ+V++RLDLD P +LL T + + ++ + + G+ EAA AN Sbjct: 8 LGDHLAIMRRRWRLPVVFLVLG-VAAGVGLSALQDPLYRAESTLLLEPDKVSTTAVVMDADEVATQARVVASAPVAQRVVERLDLDELPDELLGTVTADVIEQTRTVAITAERGTAAEAAAVAN 130 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103367.709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig103367.709.1 >prot_M-pyrifera_M_contig103367.709.1 ID=prot_M-pyrifera_M_contig103367.709.1|Name=mRNA_M-pyrifera_M_contig103367.709.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp LEDYLRGIRSHKLAVVLTTLGGLLVGLLVFAQMTPTYNSSVSVVLGPTRVback to top mRNA from alignment at M-pyrifera_M_contig103367:279..647+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig103367.709.1 ID=mRNA_M-pyrifera_M_contig103367.709.1|Name=mRNA_M-pyrifera_M_contig103367.709.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig103367:279..647+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig103367:279..647+ >mRNA_M-pyrifera_M_contig103367.709.1 ID=mRNA_M-pyrifera_M_contig103367.709.1|Name=mRNA_M-pyrifera_M_contig103367.709.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig103367:279..647+ (Macrocystis pyrifera P11B4 male)back to top |