mRNA_M-pyrifera_M_contig103348.706.1 (mRNA) Macrocystis pyrifera P11B4 male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: A0A3A9U101_RHOOP (L-aspartate oxidase n=2 Tax=Rhodococcus TaxID=1827 RepID=A0A3A9U101_RHOOP) HSP 1 Score: 58.2 bits (139), Expect = 9.410e-9 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1 Query: 1 LHPSHT---DAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126 LH SH D+VQAL FALFRTY VPSI +LL KTGEF +RV KR Sbjct: 25 LHFSHEFPWDSVQALSFALFRTYAVPSIGELLDKTGEFGNRVQKR 69
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: A0A431NNS3_9PSEU (DUF2236 domain-containing protein n=4 Tax=Pseudonocardiaceae TaxID=2070 RepID=A0A431NNS3_9PSEU) HSP 1 Score: 55.8 bits (133), Expect = 6.500e-8 Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 1 Query: 19 DAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126 D QAL FALFRTY VPSI KLLH TGEF+ RV KR Sbjct: 43 DVNQALSFALFRTYAVPSIGKLLHTTGEFTGRVQKR 78
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: A0A292YJT7_9PSEU (MPAB_Lcp_cat domain-containing protein n=1 Tax=Pseudonocardia sp. N23 TaxID=1987376 RepID=A0A292YJT7_9PSEU) HSP 1 Score: 55.5 bits (132), Expect = 8.860e-8 Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1 Query: 1 LHPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126 LH D QAL FALFRTY VPSI LLH+TGEF+ RV KR Sbjct: 32 LHEFPWDINQALSFALFRTYAVPSIGMLLHETGEFTRRVQKR 73
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: UPI001B2CC544 (DUF2236 domain-containing protein n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=UPI001B2CC544) HSP 1 Score: 55.5 bits (132), Expect = 9.090e-8 Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 1 Query: 4 HPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126 H D +QAL FALFRTY VPSI LLH TGEF+ RV KR Sbjct: 80 HEFPWDTLQALSFALFRTYAVPSIGDLLHDTGEFTKRVQKR 120
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: F4CXK1_PSEUX (MPAB_Lcp_cat domain-containing protein n=2 Tax=Pseudonocardia dioxanivorans TaxID=240495 RepID=F4CXK1_PSEUX) HSP 1 Score: 55.1 bits (131), Expect = 1.220e-7 Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 Query: 19 DAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126 D QAL FALFRTY VPSI +LLH+TGEF+ RV KR Sbjct: 42 DINQALSFALFRTYAVPSIGRLLHRTGEFTRRVQKR 77
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: UPI001E5A24BF (hypothetical protein n=1 Tax=Aeromicrobium sp. S22 TaxID=2662029 RepID=UPI001E5A24BF) HSP 1 Score: 53.5 bits (127), Expect = 1.620e-7 Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 Query: 1 LHPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126 +H D+ QAL FALFRTY VPSI +LLH+TGEF+ KR Sbjct: 28 MHEFPWDSQQALSFALFRTYAVPSIGRLLHETGEFTGATQKR 69
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: A0A3N2CZM3_9ACTN (Uncharacterized protein DUF2236 n=1 Tax=Marmoricola aurantiacus TaxID=86796 RepID=A0A3N2CZM3_9ACTN) HSP 1 Score: 54.7 bits (130), Expect = 1.670e-7 Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 1 Query: 4 HPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126 H D VQAL FALFRTY VPSI LL +TGEF+ RV KR Sbjct: 38 HDYPWDTVQALSFALFRTYAVPSIGSLLDRTGEFTGRVQKR 78
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: D8LGK0_ECTSI (MPAB_Lcp_cat domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK0_ECTSI) HSP 1 Score: 54.7 bits (130), Expect = 1.740e-7 Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 Query: 28 QALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126 ++LEFALF TYGVPSISKLL KTGEF VGKR Sbjct: 63 KSLEFALFATYGVPSISKLLDKTGEFRKHVGKR 95
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: A0A1A0KQI9_9ACTN (L-aspartate oxidase n=2 Tax=unclassified Gordonia TaxID=2657482 RepID=A0A1A0KQI9_9ACTN) HSP 1 Score: 54.3 bits (129), Expect = 2.230e-7 Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 Query: 19 DAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126 D QAL FALFRTYGVPSI +LL +TGEF+ RV KR Sbjct: 34 DINQALSFALFRTYGVPSIGRLLFRTGEFTERVQKR 69
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Match: UPI000A9F3B61 (DUF2236 domain-containing protein n=1 Tax=Marmoricola sp. Leaf446 TaxID=1736379 RepID=UPI000A9F3B61) HSP 1 Score: 54.3 bits (129), Expect = 2.320e-7 Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1 Query: 4 HPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR 126 H D +QAL FALFRTY VPSI LL +TGEF+ RV KR Sbjct: 47 HDYPWDTIQALSFALFRTYAVPSIGSLLDRTGEFTGRVQKR 87 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103348.706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig103348.706.1 >prot_M-pyrifera_M_contig103348.706.1 ID=prot_M-pyrifera_M_contig103348.706.1|Name=mRNA_M-pyrifera_M_contig103348.706.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp LHPSHTDAVQALEFALFRTYGVPSISKLLHKTGEFSSRVGKR*back to top mRNA from alignment at M-pyrifera_M_contig103348:165..293- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig103348.706.1 ID=mRNA_M-pyrifera_M_contig103348.706.1|Name=mRNA_M-pyrifera_M_contig103348.706.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig103348:165..293- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig103348:165..293- >mRNA_M-pyrifera_M_contig103348.706.1 ID=mRNA_M-pyrifera_M_contig103348.706.1|Name=mRNA_M-pyrifera_M_contig103348.706.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig103348:165..293- (Macrocystis pyrifera P11B4 male)back to top |