mRNA_M-pyrifera_M_contig103271.688.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103271.688.1
Unique NamemRNA_M-pyrifera_M_contig103271.688.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103271.688.1 vs. uniprot
Match: A0A7S1NSW7_9EUGL (Hypothetical protein n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NSW7_9EUGL)

HSP 1 Score: 141 bits (356), Expect = 3.000e-35
Identity = 85/213 (39.91%), Postives = 125/213 (58.69%), Query Frame = 1 
Query:    1 RIIEQTVCKGGIVVFHLEENPEDMELQTALFDRSQAMLKTLVRRYAEFSSNVISVFTSNYVPADCIAKTSSVLYVTPPSHAKQQLWCKKNLEHRLLEVVPSLDSAAVQMQA-TPPHTT-DLRPLEQWWMSTAFHISRAIIA-AIPVEGATGSHTALVTVDNRGDTQNLSVAVEVDGAKLPLLELDTHNAFFYFKAGYGCHELLSANGIPQQTQ 630
            RI+EQT+ KG +V+FHLEENPED + Q  LF+ ++ ++KTLV RY E++SN++ + TSNY PA  IAK + V+ + PP +AKQQ WC++     L E + +     V +   TPPH + D+R +E+W MS  +HIS+ I   + P         A+   +  G T ++SV    DG  LP L LDT + +FY      CH  L++    +Q Q
Sbjct:  351 RILEQTIAKGHVVMFHLEENPEDPQQQMTLFEMTRKLVKTLVTRYPEYASNLLYLVTSNYAPAPAIAKEARVVLMRPPHYAKQQDWCRR----MLTETIKAHAEVDVSVLLHTPPHQSEDMRNMEKWRMSVGYHISKHITKHSHPARQLASYQVAIQNKEADGSTMDVSV----DG--LPPLVLDTTDHYFY------CHPTLTSGLTSEQWQ 547
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BLAST of mRNA_M-pyrifera_M_contig103271.688.1 vs. uniprot
Match: A0A061QRB6_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QRB6_9CHLO)

HSP 1 Score: 121 bits (303), Expect = 1.710e-28
Identity = 76/219 (34.70%), Postives = 116/219 (52.97%), Query Frame = 1 
Query:    1 RIIEQTVCKGGIVVFHLEENPEDMELQTALFDRSQAMLKTLVRRYAEFSSNVISVFTSNYVPADCIAKTSSVLYVTPPSHAKQQLWCKKNLEHRLLEVVPSLDSAAVQMQATPPHTT--DLRPLEQWWMSTAFHISRAIIAAIPVEGATGSHTALVTVDNRGDTQNLSVAVEVDGAKLPLLELDTHNAFFYFKAGYGCHELLSANGIPQQTQPTAVTIV 651
            R+ EQ++ KG IV+ HLEENPED +LQ  L++ S  +L +LV RY    ++++ ++TSNY  ++ I    +V+ V PPS A Q+ WC+  L   + E+      +AV ++A  P     D+R L+QWWMS  FH+      A+     +G      TV ++GDT  ++            L L + +  F+F    G    L A GIPQ+ QP   T+V
Sbjct:  147 RLCEQSLAKGHIVILHLEENPEDPQLQADLYEVSHGILSSLVSRYRPAKAHIVYLYTSNYPASETIRDHLTVVNVRPPSPAAQRRWCEDMLRETVQEIT---GRSAVSLEADLPCIPLGDMRRLKQWWMSVGFHVGARARQAL----GSGDSGVSATV-SQGDTGAMAE-----------LTLRSEDGVFHFPEEEGGLSDLQALGIPQERQPRIATVV 346
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BLAST of mRNA_M-pyrifera_M_contig103271.688.1 vs. uniprot
Match: A0A7S3LJL1_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LJL1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.080e-25
Identity = 47/140 (33.57%), Postives = 87/140 (62.14%), Query Frame = 1 
Query:    1 RIIEQTVCKGGIVVFHLEENPEDMELQTALFDRSQAMLKTLVRRYAEFSSNVISVFTSNYVPADCIAKTSSVLYVTPPSHAKQQLWCKKNLEHRLLEVVPSLDSAAVQMQATPPHTTDLRPLEQWWMSTAFHISRAIIAA 420
            R+IEQ++ KG +V+ HLEENPE   +Q+ +F+  Q M++ L+ +Y +  + VI V TSNYVP   I  + +++ +  P+H +Q+ W K  L+ ++ + + +     +  +  PP+T+D+RPL  WW+   F  S+ ++++
Sbjct:  310 RVIEQSLVKGNVVILHLEENPEPHAVQSKMFELVQKMVRGLLSKYQDLGAKVIYVITSNYVPCKVIHDSFNIIELFAPTHEEQRTWAKDMLQQKVQDYMSTKFELNIGAEVYPPYTSDMRPLNNWWLCLGFFASKVLVSS 449
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BLAST of mRNA_M-pyrifera_M_contig103271.688.1 vs. uniprot
Match: A0A061S5E2_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S5E2_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 4.760e-24
Identity = 54/135 (40.00%), Postives = 83/135 (61.48%), Query Frame = 1 
Query:    1 RIIEQTVCKGGIVVFHLEENPEDMELQTALFDRSQAMLKTLVRRYAEFSSNVISVFTSNYVPADCIAKTSSVLYVTPPSHAKQQLWCKKNLEHRLLEVVPSLDSAAVQMQATPPHTT--DLRPLEQWWMSTAFHI 399
            R+ EQ++ KG IV+ HLEENPED +LQ  L++ S  +L +LV RY    ++++ ++TSNY  ++ I    +V+ V PPS A Q+ WC+  L   + E+      +AV ++A  P     D+R L+QWWMS  FH+
Sbjct:  150 RLCEQSLAKGHIVILHLEENPEDPQLQADLYEVSHGILSSLVSRYRPAKAHIVYLYTSNYPASETIRDHLTVVNVRPPSPAAQRRWCEDMLRETVQEIT---GRSAVSLEADLPCIPLGDMRRLKQWWMSVGFHV 281
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103271.688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1NSW7_9EUGL3.000e-3539.91Hypothetical protein n=2 Tax=Eutreptiella gymnasti... [more]
A0A061QRB6_9CHLO1.710e-2834.70Uncharacterized protein (Fragment) n=1 Tax=Tetrase... [more]
A0A7S3LJL1_9STRA2.080e-2533.57Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A061S5E2_9CHLO4.760e-2440.00Uncharacterized protein (Fragment) n=1 Tax=Tetrase... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103271contigM-pyrifera_M_contig103271:2..652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue9.7e-22
Seed eggNOG ortholog55529.EKX39088
Hectar predicted targeting categoryother localisation
EggNOG OGs2C4T7@1,2SDF6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size651
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.4912024-CDS-M-pyrifera_M_contig103271:1..6521622815537.4912024-CDS-M-pyrifera_M_contig103271:1..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103271 2..652 -
1692277454.241922-CDS-M-pyrifera_M_contig103271:1..6521692277454.241922-CDS-M-pyrifera_M_contig103271:1..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103271 2..652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103271.688.1prot_M-pyrifera_M_contig103271.688.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103271 2..652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103271.688.1

>prot_M-pyrifera_M_contig103271.688.1 ID=prot_M-pyrifera_M_contig103271.688.1|Name=mRNA_M-pyrifera_M_contig103271.688.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=217bp
RIIEQTVCKGGIVVFHLEENPEDMELQTALFDRSQAMLKTLVRRYAEFSS
NVISVFTSNYVPADCIAKTSSVLYVTPPSHAKQQLWCKKNLEHRLLEVVP
SLDSAAVQMQATPPHTTDLRPLEQWWMSTAFHISRAIIAAIPVEGATGSH
TALVTVDNRGDTQNLSVAVEVDGAKLPLLELDTHNAFFYFKAGYGCHELL
SANGIPQQTQPTAVTIV
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mRNA from alignment at M-pyrifera_M_contig103271:2..652-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103271.688.1 ID=mRNA_M-pyrifera_M_contig103271.688.1|Name=mRNA_M-pyrifera_M_contig103271.688.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=651bp|location=Sequence derived from alignment at M-pyrifera_M_contig103271:2..652- (Macrocystis pyrifera P11B4 male)
AGGATCATTGAGCAGACTGTCTGCAAGGGTGGAATTGTTGTATTCCACCT
CGAAGAGAACCCTGAGGACATGGAGCTGCAGACCGCACTCTTCGACCGCT
CCCAGGCCATGCTCAAGACCCTGGTTCGTCGCTACGCAGAGTTCAGCTCG
AACGTGATCTCAGTCTTCACTAGCAACTACGTTCCTGCCGACTGCATTGC
CAAGACATCGAGTGTGCTCTATGTGACACCACCCTCGCACGCCAAGCAGC
AACTGTGGTGCAAGAAGAACCTCGAGCACCGTCTGCTCGAGGTGGTCCCT
AGCCTCGACAGTGCGGCTGTGCAGATGCAGGCTACTCCTCCTCACACCAC
AGATCTCCGCCCCCTGGAGCAGTGGTGGATGAGCACAGCCTTCCACATCT
CCAGGGCCATTATCGCTGCCATTCCTGTTGAAGGAGCCACTGGCTCGCAC
ACTGCCTTGGTCACTGTGGATAACAGAGGTGACACCCAGAACCTGTCTGT
GGCTGTCGAAGTGGACGGCGCGAAGCTCCCCTTGCTGGAGCTCGACACCC
ACAACGCTTTCTTTTACTTCAAGGCAGGCTATGGATGCCACGAGCTTCTC
TCTGCGAACGGCATTCCCCAGCAGACCCAGCCCACGGCAGTCACGATCGT
G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103271:2..652-

>mRNA_M-pyrifera_M_contig103271.688.1 ID=mRNA_M-pyrifera_M_contig103271.688.1|Name=mRNA_M-pyrifera_M_contig103271.688.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig103271:2..652- (Macrocystis pyrifera P11B4 male)
AGGATCATTGAGCAGACTGTCTGCAAGGGTGGAATTGTTGTATTCCACCT
CGAAGAGAACCCTGAGGACATGGAGCTGCAGACCGCACTCTTCGACCGCT
CCCAGGCCATGCTCAAGACCCTGGTTCGTCGCTACGCAGAGTTCAGCTCG
AACGTGATCTCAGTCTTCACTAGCAACTACGTTCCTGCCGACTGCATTGC
CAAGACATCGAGTGTGCTCTATGTGACACCACCCTCGCACGCCAAGCAGC
AACTGTGGTGCAAGAAGAACCTCGAGCACCGTCTGCTCGAGGTGGTCCCT
AGCCTCGACAGTGCGGCTGTGCAGATGCAGGCTACTCCTCCTCACACCAC
AGATCTCCGCCCCCTGGAGCAGTGGTGGATGAGCACAGCCTTCCACATCT
CCAGGGCCATTATCGCTGCCATTCCTGTTGAAGGAGCCACTGGCTCGCAC
ACTGCCTTGGTCACTGTGGATAACAGAGGTGACACCCAGAACCTGTCTGT
GGCTGTCGAAGTGGACGGCGCGAAGCTCCCCTTGCTGGAGCTCGACACCC
ACAACGCTTTCTTTTACTTCAAGGCAGGCTATGGATGCCACGAGCTTCTC
TCTGCGAACGGCATTCCCCAGCAGACCCAGCCCACGGCAGTCACGATCGT
GAGGATCATTGAGCAGACTGTCTGCAAGGGTGGAATTGTTGTATTCCACC
TCGAAGAGAACCCTGAGGACATGGAGCTGCAGACCGCACTCTTCGACCGC
TCCCAGGCCATGCTCAAGACCCTGGTTCGTCGCTACGCAGAGTTCAGCTC
GAACGTGATCTCAGTCTTCACTAGCAACTACGTTCCTGCCGACTGCATTG
CCAAGACATCGAGTGTGCTCTATGTGACACCACCCTCGCACGCCAAGCAG
CAACTGTGGTGCAAGAAGAACCTCGAGCACCGTCTGCTCGAGGTGGTCCC
TAGCCTCGACAGTGCGGCTGTGCAGATGCAGGCTACTCCTCCTCACACCA
CAGATCTCCGCCCCCTGGAGCAGTGGTGGATGAGCACAGCCTTCCACATC
TCCAGGGCCATTATCGCTGCCATTCCTGTTGAAGGAGCCACTGGCTCGCA
CACTGCCTTGGTCACTGTGGATAACAGAGGTGACACCCAGAACCTGTCTG
TGGCTGTCGAAGTGGACGGCGCGAAGCTCCCCTTGCTGGAGCTCGACACC
CACAACGCTTTCTTTTACTTCAAGGCAGGCTATGGATGCCACGAGCTTCT
CTCTGCGAACGGCATTCCCCAGCAGACCCAGCCCACGGCAGTCACGATCG
TG
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