mRNA_M-pyrifera_M_contig103263.684.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103263.684.1
Unique NamemRNA_M-pyrifera_M_contig103263.684.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103263.684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103263contigM-pyrifera_M_contig103263:3..626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.0
Seed ortholog evalue3.8e-07
Seed eggNOG ortholog1173028.ANKO01000030_gene3323
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Hemolysin-type calcium-binding repeat (2 copies)
EggNOG OGs1G0ZC@1117,1H8KD@1150,COG2931@1,COG2931@2
COG Functional cat.Q
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
Exons1
Model size624
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.3040483-CDS-M-pyrifera_M_contig103263:2..6261622815537.3040483-CDS-M-pyrifera_M_contig103263:2..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103263 3..626 +
1692277454.17702-CDS-M-pyrifera_M_contig103263:2..6261692277454.17702-CDS-M-pyrifera_M_contig103263:2..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103263 3..626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103263.684.1prot_M-pyrifera_M_contig103263.684.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103263 3..626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103263.684.1

>prot_M-pyrifera_M_contig103263.684.1 ID=prot_M-pyrifera_M_contig103263.684.1|Name=mRNA_M-pyrifera_M_contig103263.684.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=208bp
AITNSTVTLSGCTFLYCSASGGPGGAVYLESIFSENRAELLLDECLFSAC
SSTSSGGAIWMDGGNLEDSSSTFVGNHAAIEGGAIATINSSPAVTVVEVS
LLDNLLKYNTASRGGALALAGYQVNFANSTLARNGAQHSGGAAMLFNCQS
TFKYVIFSSNKAEDDDSFGGALFLTGLEGVSTASISDSEFIGNYCDESGG
GASFEHTS
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mRNA from alignment at M-pyrifera_M_contig103263:3..626+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103263.684.1 ID=mRNA_M-pyrifera_M_contig103263.684.1|Name=mRNA_M-pyrifera_M_contig103263.684.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig103263:3..626+ (Macrocystis pyrifera P11B4 male)
GCTATCACTAATTCGACCGTCACACTGAGCGGGTGCACCTTTTTGTACTG
CTCTGCCTCTGGCGGCCCAGGTGGCGCCGTTTACCTGGAGAGCATTTTCT
CTGAGAACCGCGCCGAACTGCTGTTGGATGAGTGTCTCTTTTCCGCATGC
AGCTCGACGTCCAGCGGTGGTGCCATCTGGATGGACGGCGGCAACCTGGA
GGACTCCTCCAGCACCTTCGTCGGCAACCACGCCGCAATTGAAGGTGGCG
CAATTGCCACCATCAACTCCAGCCCCGCCGTTACCGTTGTGGAGGTTTCC
CTGCTCGACAATTTGCTCAAGTACAACACCGCCAGCCGCGGAGGTGCGCT
GGCACTGGCCGGTTACCAAGTCAACTTTGCGAACAGCACCCTCGCCAGAA
ACGGTGCCCAGCACTCTGGTGGAGCTGCCATGCTCTTTAACTGCCAGTCT
ACGTTCAAGTACGTCATCTTTTCCAGCAACAAAGCAGAGGATGACGACAG
CTTCGGAGGTGCTCTTTTCCTTACCGGCCTAGAGGGAGTCTCGACTGCAA
GTATCTCCGACTCAGAGTTCATTGGTAACTATTGTGACGAGTCTGGCGGA
GGAGCGTCATTTGAGCACACCTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103263:3..626+

>mRNA_M-pyrifera_M_contig103263.684.1 ID=mRNA_M-pyrifera_M_contig103263.684.1|Name=mRNA_M-pyrifera_M_contig103263.684.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1248bp|location=Sequence derived from alignment at M-pyrifera_M_contig103263:3..626+ (Macrocystis pyrifera P11B4 male)
GCTATCACTAATTCGACCGTCACACTGAGCGGGTGCACCTTTTTGTACTG
CTCTGCCTCTGGCGGCCCAGGTGGCGCCGTTTACCTGGAGAGCATTTTCT
CTGAGAACCGCGCCGAACTGCTGTTGGATGAGTGTCTCTTTTCCGCATGC
AGCTCGACGTCCAGCGGTGGTGCCATCTGGATGGACGGCGGCAACCTGGA
GGACTCCTCCAGCACCTTCGTCGGCAACCACGCCGCAATTGAAGGTGGCG
CAATTGCCACCATCAACTCCAGCCCCGCCGTTACCGTTGTGGAGGTTTCC
CTGCTCGACAATTTGCTCAAGTACAACACCGCCAGCCGCGGAGGTGCGCT
GGCACTGGCCGGTTACCAAGTCAACTTTGCGAACAGCACCCTCGCCAGAA
ACGGTGCCCAGCACTCTGGTGGAGCTGCCATGCTCTTTAACTGCCAGTCT
ACGTTCAAGTACGTCATCTTTTCCAGCAACAAAGCAGAGGATGACGACAG
CTTCGGAGGTGCTCTTTTCCTTACCGGCCTAGAGGGAGTCTCGACTGCAA
GTATCTCCGACTCAGAGTTCATTGGTAACTATTGTGACGAGTCTGGCGGA
GGAGCGTCATTTGAGCACACCTCGGCTATCACTAATTCGACCGTCACACT
GAGCGGGTGCACCTTTTTGTACTGCTCTGCCTCTGGCGGCCCAGGTGGCG
CCGTTTACCTGGAGAGCATTTTCTCTGAGAACCGCGCCGAACTGCTGTTG
GATGAGTGTCTCTTTTCCGCATGCAGCTCGACGTCCAGCGGTGGTGCCAT
CTGGATGGACGGCGGCAACCTGGAGGACTCCTCCAGCACCTTCGTCGGCA
ACCACGCCGCAATTGAAGGTGGCGCAATTGCCACCATCAACTCCAGCCCC
GCCGTTACCGTTGTGGAGGTTTCCCTGCTCGACAATTTGCTCAAGTACAA
CACCGCCAGCCGCGGAGGTGCGCTGGCACTGGCCGGTTACCAAGTCAACT
TTGCGAACAGCACCCTCGCCAGAAACGGTGCCCAGCACTCTGGTGGAGCT
GCCATGCTCTTTAACTGCCAGTCTACGTTCAAGTACGTCATCTTTTCCAG
CAACAAAGCAGAGGATGACGACAGCTTCGGAGGTGCTCTTTTCCTTACCG
GCCTAGAGGGAGTCTCGACTGCAAGTATCTCCGACTCAGAGTTCATTGGT
AACTATTGTGACGAGTCTGGCGGAGGAGCGTCATTTGAGCACACCTCG
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