mRNA_M-pyrifera_M_contig103252.681.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103252.681.1
Unique NamemRNA_M-pyrifera_M_contig103252.681.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103252.681.1 vs. uniprot
Match: A0A1V0S925_9VIRU (Regulator of G protein signaling domain n=1 Tax=Catovirus CTV1 TaxID=1977631 RepID=A0A1V0S925_9VIRU)

HSP 1 Score: 74.3 bits (181), Expect = 1.360e-13
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   16 DELNARDFSDPAVLATDHGIITGANRQALQLFGYTRNEMMGENLRMLMPAAVAEHHDKFLSHYRKHRDRRLIGKARVVSIRRKD 267
            D L      +P V+A + G+I G N +A +LFGY++ EMMG+++ +LMP   A+ HD +L +YRK    RLIGK R + I+RKD
Sbjct:  129 DILAIESILEPCVVADNFGVILGFNAEAEKLFGYSKTEMMGKSVTLLMPDTYAKVHDNYLENYRKTDTTRLIGKPRRLPIKRKD 212          
BLAST of mRNA_M-pyrifera_M_contig103252.681.1 vs. uniprot
Match: A0A2P6NVW4_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NVW4_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 1.990e-13
Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   37 FSDPAVLATDHGIITGANRQALQLFGYTRNEMMGENLRMLMPAAVAEHHDKFLSHYRKHRDRRLIGKARVVSIRRKD 267
            F++  V+ ++ G ITG N +AL++FGYTRNEMMG  + ++MP      H  ++S Y K +D+RLIGK R++ + R D
Sbjct:  417 FNNAVVITSEEGTITGVNNRALEMFGYTRNEMMGHPVTIIMPTRFHAVHGNYMSSYMKTKDKRLIGKPRILPMVRAD 493          
BLAST of mRNA_M-pyrifera_M_contig103252.681.1 vs. uniprot
Match: A0A7S4KZC5_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KZC5_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 2.350e-12
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   37 FSDPAVLATDHGIITGANRQALQLFGYTRNEMMGENLRMLMPAAVAEHHDKFLSHYRKHRDRRLIGKARVV 249
            F+D  V+A++ G I G N  AL LFGYTR E+MG+ L++LMP  +A+HHD ++ +Y K  + RL+ + R +
Sbjct:   85 FNDAVVMASEEGCIVGVNDAALNLFGYTRMELMGKKLQILMPEQIAKHHDHYIHNYLKTNEERLMRQPRKL 155          
BLAST of mRNA_M-pyrifera_M_contig103252.681.1 vs. uniprot
Match: D2W3W8_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W3W8_NAEGR)

HSP 1 Score: 70.1 bits (170), Expect = 4.430e-12
Identity = 32/71 (45.07%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   37 FSDPAVLATDHGIITGANRQALQLFGYTRNEMMGENLRMLMPAAVAEHHDKFLSHYRKHRDRRLIGKARVV 249
             +DP V+A D GII G N  A  +F +   E++GEN+++LMP   A++HD+F+++Y+K R +R+IGK R V
Sbjct:  234 MTDPTVIANDKGIIIGVNGAAEAMFEWKHIELIGENVKVLMPTVFAKYHDEFINNYKKTRKQRMIGKPRNV 304          
BLAST of mRNA_M-pyrifera_M_contig103252.681.1 vs. uniprot
Match: A0A7S4KQI1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KQI1_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 5.300e-12
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   37 FSDPAVLATDH-GIITGANRQALQLFGYTRNEMMGENLRMLMPAAVAEHHDKFLSHYRKHRDRRLIGKAR 243
            F+D AV+ +   GII G N  AL LFGYTR+EM+G+ + +LMP  VA+HH K+L+ Y +  ++RLIGK R
Sbjct:   26 FNDLAVVVSSEVGIIIGVNEGALNLFGYTRSEMLGKPILILMPPEVAQHHAKYLARYLETGEKRLIGKPR 95          
BLAST of mRNA_M-pyrifera_M_contig103252.681.1 vs. uniprot
Match: A0A7S1LQM1_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LQM1_NEODS)

HSP 1 Score: 65.9 bits (159), Expect = 1.350e-11
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   46 PAVLATDHGIITGANRQALQLFGYTRNEMMGENLRMLMPAAVAEHHDKFLSHYRKHRDRRLIGKARVVSIRRKD 267
            P +  T  G++T  N  A+++FGY ++E++G N++MLMP  VA++HD +L  Y + R R +I + R V  RRKD
Sbjct:   77 PLIAITTKGVVTRFNHAAVEVFGYKQHEVVGHNIKMLMPKRVADNHDGYLERYLRTRQRSVIDRTRHVLGRRKD 150          
BLAST of mRNA_M-pyrifera_M_contig103252.681.1 vs. uniprot
Match: A0A7S4I6B5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I6B5_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.640e-11
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   19 ELNARDFSDPAVLATDHGIITGANRQALQLFGYTRNEMMGENLRMLMPAAVAEHHDKFLSHYRKHRDRRLIGKARVVSIRRKD 267
            E++   FS+  V++ + GII   N++ L L GYTR+EM+GEN+ ++M   +   H + +  Y K   RRLIGK+R+V  + KD
Sbjct:   96 EISLDSFSEATVMSNEKGIIINVNQKILDLLGYTRDEMIGENVSIMMDYHIGNIHQQLIDTYYKTGVRRLIGKSRLVRAKHKD 178          
BLAST of mRNA_M-pyrifera_M_contig103252.681.1 vs. uniprot
Match: A0A371RJJ5_9PROT (Histidine kinase n=1 Tax=Parvularcula marina TaxID=2292771 RepID=A0A371RJJ5_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 6.130e-11
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    7 VAVDELNARDFSDPA----VLATDHGIITGANRQALQLFGYTRNEMMGENLRMLMPAAVAEHHDKFLSHYRKHRDRRLIGKARVVSIRRKD 267
            VA  E+  R   D A    +  ++ G I   N  AL LFGY  +EM+G N++MLMP    +HHD++L HYR   ++++IG  R V  +RKD
Sbjct:   23 VAESEVRLRAILDHALDGVITISEEGTIESLNPAALNLFGYDDHEMIGANVKMLMPEPYQDHHDQYLKHYRDTGEKKIIGIGREVVGQRKD 113          
BLAST of mRNA_M-pyrifera_M_contig103252.681.1 vs. uniprot
Match: UPI000B802A0A (PAS domain S-box protein n=1 Tax=Candidatus Entotheonella palauensis TaxID=93172 RepID=UPI000B802A0A)

HSP 1 Score: 66.6 bits (161), Expect = 7.190e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   43 DPAVLATDHGIITGANRQALQLFGYTRNEMMGENLRMLMPAAVAEHHDKFLSHYRKHRDRRLIGKARVVSIRRKD 267
            D  +   DHG+I   N  A ++FGY   E++G+N+R+LMPA   + HD +L HYR+  ++R+IG  R V  +RKD
Sbjct:   20 DAIITIDDHGVIESFNLAAERIFGYGAEEVVGQNVRLLMPAPYHDEHDGYLEHYRRTGEKRIIGIGREVVGQRKD 94          
BLAST of mRNA_M-pyrifera_M_contig103252.681.1 vs. uniprot
Match: A0A509MMU8_9GAMM (EAL domain-containing protein n=1 Tax=Marinobacter halodurans TaxID=2528979 RepID=A0A509MMU8_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 7.330e-11
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   43 DPAVLATDHGIITGANRQALQLFGYTRNEMMGENLRMLMPAAVAEHHDKFLSHYRKHRDRRLIGKARVVSIRRKD 267
            D  +   + G+ITG N  A +LFGY+R++++G N++ LMP  VA+HHD++L +Y   R  R+IG  R V  +RKD
Sbjct:   19 DGIITIDERGMITGFNSAAERLFGYSRSDVIGRNVKCLMPDYVAQHHDEYLENYLHGRPARIIGIGREVEGQRKD 93          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103252.681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V0S925_9VIRU1.360e-1345.24Regulator of G protein signaling domain n=1 Tax=Ca... [more]
A0A2P6NVW4_9EUKA1.990e-1344.16Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A7S4KZC5_9EUKA2.350e-1245.07Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
D2W3W8_NAEGR4.430e-1245.07Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A7S4KQI1_9EUKA5.300e-1251.43Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A7S1LQM1_NEODS1.350e-1141.89Hypothetical protein (Fragment) n=1 Tax=Neobodo de... [more]
A0A7S4I6B5_9EUKA1.640e-1139.76Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A371RJJ5_9PROT6.130e-1140.66Histidine kinase n=1 Tax=Parvularcula marina TaxID... [more]
UPI000B802A0A7.190e-1142.67PAS domain S-box protein n=1 Tax=Candidatus Entoth... [more]
A0A509MMU8_9GAMM7.330e-1144.00EAL domain-containing protein n=1 Tax=Marinobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103252contigM-pyrifera_M_contig103252:5..271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.8
Seed ortholog evalue3e-09
Seed eggNOG ortholog1500306.JQLA01000054_gene3286
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine kinase
EggNOG OGs1RCM9@1224,2TQQ9@28211,4B880@82115,COG4191@1,COG4191@2
COG Functional cat.T
Best tax levelRhizobiaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.1392016-CDS-M-pyrifera_M_contig103252:4..2711622815537.1392016-CDS-M-pyrifera_M_contig103252:4..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103252 5..271 -
1692277454.1223614-CDS-M-pyrifera_M_contig103252:4..2711692277454.1223614-CDS-M-pyrifera_M_contig103252:4..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103252 5..271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103252.681.1prot_M-pyrifera_M_contig103252.681.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103252 5..271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103252.681.1

>prot_M-pyrifera_M_contig103252.681.1 ID=prot_M-pyrifera_M_contig103252.681.1|Name=mRNA_M-pyrifera_M_contig103252.681.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MIVAVDELNARDFSDPAVLATDHGIITGANRQALQLFGYTRNEMMGENLR
MLMPAAVAEHHDKFLSHYRKHRDRRLIGKARVVSIRRKD
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mRNA from alignment at M-pyrifera_M_contig103252:5..271-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103252.681.1 ID=mRNA_M-pyrifera_M_contig103252.681.1|Name=mRNA_M-pyrifera_M_contig103252.681.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig103252:5..271- (Macrocystis pyrifera P11B4 male)
ATGATCGTGGCAGTGGATGAGCTCAACGCGAGGGACTTCTCTGATCCGGC CGTGCTTGCAACAGATCATGGGATCATCACAGGAGCCAACCGCCAAGCCC TCCAGCTCTTTGGATACACAAGGAACGAGATGATGGGGGAGAACCTGCGC ATGCTCATGCCTGCTGCCGTTGCCGAGCACCACGACAAGTTTCTGTCCCA CTACCGCAAGCACAGAGACAGGCGGCTGATTGGCAAGGCTCGAGTTGTGA GCATTCGTCGCAAGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103252:5..271-

>mRNA_M-pyrifera_M_contig103252.681.1 ID=mRNA_M-pyrifera_M_contig103252.681.1|Name=mRNA_M-pyrifera_M_contig103252.681.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig103252:5..271- (Macrocystis pyrifera P11B4 male)
ATGATCGTGGCAGTGGATGAGCTCAACGCGAGGGACTTCTCTGATCCGGC
CGTGCTTGCAACAGATCATGGGATCATCACAGGAGCCAACCGCCAAGCCC
TCCAGCTCTTTGGATACACAAGGAACGAGATGATGGGGGAGAACCTGCGC
ATGCTCATGCCTGCTGCCGTTGCCGAGCACCACGACAAGTTTCTGTCCCA
CTACCGCAAGCACAGAGACAGGCGGCTGATTGGCAAGGCTCGAGTTGTGA
GCATTCGTCGCAAGGATATGATCGTGGCAGTGGATGAGCTCAACGCGAGG
GACTTCTCTGATCCGGCCGTGCTTGCAACAGATCATGGGATCATCACAGG
AGCCAACCGCCAAGCCCTCCAGCTCTTTGGATACACAAGGAACGAGATGA
TGGGGGAGAACCTGCGCATGCTCATGCCTGCTGCCGTTGCCGAGCACCAC
GACAAGTTTCTGTCCCACTACCGCAAGCACAGAGACAGGCGGCTGATTGG
CAAGGCTCGAGTTGTGAGCATTCGTCGCAAGGAT
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