mRNA_M-pyrifera_M_contig10322.677.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10322.677.1
Unique NamemRNA_M-pyrifera_M_contig10322.677.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10322.677.1 vs. uniprot
Match: D8LQW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQW0_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.020e-34
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:  523 LRPSERTAPASRPWPDLESLSRYEPPKSEVTTPLRRADWTVPHGSAMHALSAALDAAAGSTLCSSPLDMREERRKSIRQRYRERLDHFRLIQ 798
            L+PSERTAP +RPWPD E + RYEPP+S +TTPLRR+DW VPHGSAMHAL+AALD AAGST CSSPLDMR+E R+S+R+RY+ER DHFRLIQ
Sbjct:  525 LKPSERTAPKTRPWPDFERI-RYEPPESAITTPLRRSDWKVPHGSAMHALAAALDEAAGSTACSSPLDMRQEGRESVRRRYQERADHFRLIQ 615
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10322.677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQW0_ECTSI1.020e-3476.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10322contigM-pyrifera_M_contig10322:6537..10486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_001770.1
Exons3
Model size798
Cds size771
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10322.677.1prot_M-pyrifera_M_contig10322.677.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10322 6537..10459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.8621972-CDS-M-pyrifera_M_contig10322:6536..66261622815536.8621972-CDS-M-pyrifera_M_contig10322:6536..6626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10322 6537..6626 -
1692277453.9649248-CDS-M-pyrifera_M_contig10322:6536..66261692277453.9649248-CDS-M-pyrifera_M_contig10322:6536..6626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10322 6537..6626 -
1622815536.8741496-CDS-M-pyrifera_M_contig10322:6877..70011622815536.8741496-CDS-M-pyrifera_M_contig10322:6877..7001Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10322 6878..7001 -
1692277453.9761724-CDS-M-pyrifera_M_contig10322:6877..70011692277453.9761724-CDS-M-pyrifera_M_contig10322:6877..7001Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10322 6878..7001 -
1622815536.8859-CDS-M-pyrifera_M_contig10322:9902..104591622815536.8859-CDS-M-pyrifera_M_contig10322:9902..10459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10322 9903..10459 -
1692277453.9864492-CDS-M-pyrifera_M_contig10322:9902..104591692277453.9864492-CDS-M-pyrifera_M_contig10322:9902..10459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10322 9903..10459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.900018-UTR-M-pyrifera_M_contig10322:10459..104861622815536.900018-UTR-M-pyrifera_M_contig10322:10459..10486Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10322 10460..10486 -
1692277453.9980643-UTR-M-pyrifera_M_contig10322:10459..104861692277453.9980643-UTR-M-pyrifera_M_contig10322:10459..10486Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10322 10460..10486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10322.677.1

>prot_M-pyrifera_M_contig10322.677.1 ID=prot_M-pyrifera_M_contig10322.677.1|Name=mRNA_M-pyrifera_M_contig10322.677.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=257bp
MAVVASATRLCESSTATTNTTAFSSIIVAPATATASSSVMETPPPAHQRM
VPPTVSTPATAPRRRLAAAAAAAAAAAEPGGGRRGVRAAVDVGLGLGSPN
PPPTSSNKPPCFWSTPTRKGFHGGGGGGGDGSSVRGTPPPQRQGSRGGGG
PGGKGGEGKRLAPLMLRPSERTAPASRPWPDLESLSRYEPPKSEVTTPLR
RADWTVPHGSAMHALSAALDAAAGSTLCSSPLDMREERRKSIRQRYRERL
DHFRLIQ
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mRNA from alignment at M-pyrifera_M_contig10322:6537..10486-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10322.677.1 ID=mRNA_M-pyrifera_M_contig10322.677.1|Name=mRNA_M-pyrifera_M_contig10322.677.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3950bp|location=Sequence derived from alignment at M-pyrifera_M_contig10322:6537..10486- (Macrocystis pyrifera P11B4 male)
GAGAGTTCGGCCGACTTTGCCGGTCGAATGGCGGTCGTCGCATCGGCAAC
GCGTCTCTGCGAGTCCTCCACCGCCACTACTAACACTACCGCCTTCTCAA
GCATTATTGTTGCCCCGGCAACCGCTACCGCCTCCTCTTCCGTCATGGAA
ACCCCTCCTCCGGCCCATCAGCGCATGGTTCCGCCGACCGTTTCGACCCC
GGCGACAGCGCCCCGCCGCAGGCTCGCGGCGGCGGCAGCGGCGGCAGCGG
CAGCCGCGGAGCCGGGGGGAGGGAGGAGGGGAGTGAGGGCAGCGGTGGAT
GTGGGGCTAGGGTTAGGGTCTCCCAACCCCCCCCCCACGAGCAGCAACAA
GCCTCCCTGCTTTTGGTCCACCCCCACACGAAAAGGCTTTCACGGCGGTG
GCGGCGGTGGTGGTGATGGCAGTAGTGTTCGGGGCACGCCCCCCCCCCAA
AGGCAAGGGAGCAGAGGTGGAGGCGGGCCTGGGGGTAAGGGTGGGGAAGG
GAAGCGGCTGGCGCCTCTGATGCTGAGACCTTCCGAGCGAACCGCTCCGG
CGAGTCGCCCTTGGCCGGACTTGGAGAGCCTCAGGTGTGGGTTTGAAGGG
GGCGCGTTTTTTTTGTCCACACAGATCGGACAGAATCATCGACCCCCAAT
ACATGATCTGTATATGTTTTAAGGCAGATAAAAGTCCTGGCCTGTGTGAT
CTAGCTCGTGCTTGTTATCGAGCGGAAGCTCATGATCTCGGCCTTTCAGG
GCGGTTGCGTCCCTGATTGGTATGATCTAGCTCGCTGCTTCGCCGGGCGG
CAGCTCATGATCTAGCCGTTTCAGGCAATATACAGCCTCACACAGATGGG
ACAGATCATCGACCCCCAGCTCCTCATCTACTGCTGTAGATAGTTTAGGG
CAGATGAGAGTCCCGACCTGTATGATGTACAAAATACGGTGGCTCGTATT
GCCGGCTGGGAGCTCATGATCTACCACTGCTGTGCGTGTTTTCAGGGCAG
GTAAATTCCGTGACCTGTGTGATCCAGCTCGTGTTCCGCCGGGTCGAAGC
TCATGATTCTAGATATTTCAGGATTAAGACGCGTTCCTGATCTGTACGAC
CTGTGCAGCAGTAACCTCATGTTTTTGTCGTCGGGTGGAAGCCGTCGTAT
TGATACTGCTTGATCTACGTACGGCAGGAGCGCGTCGTGCTTCCTGGGTT
GGAATATGTGCTTATAACAGATCCTGCGTGGCACACCTCCTAAAAAAAGA
CAGATTTTGGGTTTAGATGCATCTACTAGGTCGTGATCAGCCCGAAGTGT
TAACTGCGGTACAGCATGTCTAGACTATTGTACTACAGTAGGTTCAAGTG
TTTTCCCGCTTTGCTGTGGCCTTTCCGATGGAAACCCCGCTTGTGGTGAA
TAGAAGGTCGCGTGAGACGAGGGCATCTTTGGTGGGCCCTGCCGGCGGCT
AGTTAACCGTAAACGAGCGTTGAGTTCACGCAGGAATATGATCGTTTTTT
TTTTTTTGACGGTTGGTAAGGGTGCTTCTAAAGTCAAGCATAATGCTTTC
GGAAGGCCCTTTCTCTCTCTCGACCCGGTATTTTCTGAAAACAACCTTGA
ACCCTTCTATTGATCGGGCTAAAACTGGAGTTACGTTTTGGGAACAAAAC
TATTACGGGGGGACATAGTAAATAGGACCTGCGTCGAACACAAAAACCTA
TATATTTCCCAATTTTTTTCTGGCAATATTTGGTCCTATTTACTATGGAC
CCCCCGTAAACAACAACAATTCGAGTGGTTTGTCCCCGAAACGGGACACG
ATTTTTTTTCTCTAAACAGGGTTAAATGTTCGGTGTTTTGGTCAAACCTT
CCCGTTCTAGAAAAATCGGGCGCGGAGAAAACGATACCACCCTTGTGCGA
TTTCTACGCTCTTTACGTCACCTGTACCACGGGGGTCTATTTGAGGGACC
CAAGTCCGAGTGGGATAAGGTCGGTGTGGGATTAGGGTGCCAATTGGGAG
CGGGGTCGGGTAAAAGCGTGGGCCTGTGAAGTTCTCCGACCGGCTCGCGT
CCGCAAGTATTTTGCACCTCGAATAGAGATCATGACCCAGTCATCCCACG
GTACGAGTCGGGGGGGGCGGTTTCACTCTTTTTTTTTTTCTTTTTTTTTG
CGTTCTGAGGCAGTATTTTCTGACCGGTTGAGTTCCTCAAAGAGCAAAAC
TATTAATATTACCTGTAACCTGTTCCGGGGGACCATAGTAAATAGGACCA
AATCTTGTTGGTAAAAATAGGTAAATATATAGGTTTTTATGTATACCATA
GGTCTTATTAACTATAGACCCCCGTAATAGTATCAAACTCCTTAGTGGTA
GTTTAGTTTCAGAACTACAGCGGTAGCGGGTTTTTATGTATACCATAGGT
CTTATTAACTATAGACCCCCGTAATAGTATCACACCCCTTAGTGGTATTT
TAGTTTCAGAACTACAGCAGTAGCGCACAGAACGTCTGCTAGGGTCCCGC
GAACAAACTCGTTCGGAGGCGTGTTGCAGGTGACCTACTGGGCTACTCCT
TTGAGGAACTCCGAAAATAAGGCATCGCCCCCAGAGGGGCATTGCTCCGG
GTCCCCGCTTGATAGTCCAGATATTTCAGGGCAGTTGCATCCCTGATCTG
TACGATCTGTATGTTCTAGCTCTGTTGCCGGGTGGGAGAGTATGTATACA
CAATCTGCATGATCTACTGTACTGTAGGGCGCGTTTCTTGGGCTGGATCT
GTAGCTGTACAGATCCTGTACAACACGTGTCATAGCATCAGTTCAGGATC
TAGATGATCTATCTGTAGAGGATCTGTCTGATCTGTCCGATCTGTCCGAC
GCGTGAACTAGTTCCTGTGGTGGGTTGAGGTAGTCACTTGATAGTGATGA
GGTGGTGGTGGACGAGGGGCGGTTAAGAAGGGGCGGTGGCACGGGGGGGC
GGGGGGGCGGGCGGAAGGTCTTCATGGTTGCCCTTGCTTCACTTCGATCA
AAATCCCCGCCCGCGCACGCATGCAAACAACATTTGGAACCCCCTCCCTC
CCCACCCGGCTCGATGACCTCGGTGGCAGCACAGTACGAGCCTTTTTGGT
CTATTGTAGAACCACCACAACATTGCATTTGCGTACCTATCGTCCTCCAG
ACGACTCCAAAGTGGGCTGGACGCCCCGGGAAGGTATTTACTCTCTCTCT
CCCTCTCTCTCTCTCGTGTAGTTTTGGTGTGGACTACACACCGAGCTGGG
TCGGTACCTCGAGTCTACGTAGACGGAACAGAGCGTCAGACCTTAAGTGT
GCTTGGGTGTGACCTTGATCTCGTGTACAATGAGGCGGTACTATCTAGGG
CCAGCGGACCTTGTATCCACAACAACTTCATTTTATGATTCGGAAGCTCC
GTCTCGACGCAAAATGCCTGTGAGCGATTTGTTTGGAAACCCCCCCCCCC
CCCCCCCCCCGACGACGCATGGGCTACGGCGGCAGCAGGTACGAGCCACC
CAAGTCTGAGGTGACGACGCCGCTGCGGAGAGCCGATTGGACAGTTCCCC
ACGGGTCCGCGATGCACGCCCTCTCGGCGGCGCTCGATGCCGCTGCCGGC
TCCACCTTGGTGAGGGGTCTCCCGATTGTTTGGAGGCGTAGGACATATCT
TGATCTACTTGACCGCTTCGTCGCGATAACGTCAATCTCATCACCGCAGC
CCTCCCCCGTATCATAGGCCCCTTCCCTCACTATATATAGTTCCACCCGT
CCCTTCCTTCCCCTCCCCTTCCTTTCCCGCCCCCCCTTTCCATCCCCTCC
CCTCCCCTCCCATCCCATCCCCCCATCCCTCCAATATCATAACGCCTCTT
CGCCGAAAAGTGTTCTTCGCCCCTTGACATGCGCGAGGAGAGACGTAAGA
GCATCCGGCAGCGCTACCGGGAGCGGCTGGACCACTTCCGACTCATACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10322:6537..10486-

>mRNA_M-pyrifera_M_contig10322.677.1 ID=mRNA_M-pyrifera_M_contig10322.677.1|Name=mRNA_M-pyrifera_M_contig10322.677.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1542bp|location=Sequence derived from alignment at M-pyrifera_M_contig10322:6537..10486- (Macrocystis pyrifera P11B4 male)
ATGGCGGTCGTCGCATCGGCAACGCGTCTCTGCGAGTCCTCCACCGCCAC
TACTAACACTACCGCCTTCTCAAGCATTATTGTTGCCCCGGCAACCGCTA
CCGCCTCCTCTTCCGTCATGGAAACCCCTCCTCCGGCCCATCAGCGCATG
GTTCCGCCGACCGTTTCGACCCCGGCGACAGCGCCCCGCCGCAGGCTCGC
GGCGGCGGCAGCGGCGGCAGCGGCAGCCGCGGAGCCGGGGGGAGGGAGGA
GGGGAGTGAGGGCAGCGGTGGATGTGGGGCTAGGGTTAGGGTCTCCCAAC
CCCCCCCCCACGAGCAGCAACAAGCCTCCCTGCTTTTGGTCCACCCCCAC
ACGAAAAGGCTTTCACGGCGGTGGCGGCGGTGGTGGTGATGGCAGTAGTG
TTCGGGGCACGCCCCCCCCCCAAAGGCAAGGGAGCAGAGGTGGAGGCGGG
CCTGGGGGTAAGGGTGGGGAAGGGAAGCGGCTGGCGCCTCTGATGCTGAG
ACCTTCCGAGCGAACCGCTCCGGCGAGTCGCCCTTGGCCGGACTTGGAGA
GCCTCAGATGGCGGTCGTCGCATCGGCAACGCGTCTCTGCGAGTCCTCCA
CCGCCACTACTAACACTACCGCCTTCTCAAGCATTATTGTTGCCCCGGCA
ACCGCTACCGCCTCCTCTTCCGTCATGGAAACCCCTCCTCCGGCCCATCA
GCGCATGGTTCCGCCGACCGTTTCGACCCCGGCGACAGCGCCCCGCCGCA
GGCTCGCGGCGGCGGCAGCGGCGGCAGCGGCAGCCGCGGAGCCGGGGGGA
GGGAGGAGGGGAGTGAGGGCAGCGGTGGATGTGGGGCTAGGGTTAGGGTC
TCCCAACCCCCCCCCCACGAGCAGCAACAAGCCTCCCTGCTTTTGGTCCA
CCCCCACACGAAAAGGCTTTCACGGCGGTGGCGGCGGTGGTGGTGATGGC
AGTAGTGTTCGGGGCACGCCCCCCCCCCAAAGGCAAGGGAGCAGAGGTGG
AGGCGGGCCTGGGGGTAAGGGTGGGGAAGGGAAGCGGCTGGCGCCTCTGA
TGCTGAGACCTTCCGAGCGAACCGCTCCGGCGAGTCGCCCTTGGCCGGAC
TTGGAGAGCCTCAGCAGGTACGAGCCACCCAAGTCTGAGGTGACGACGCC
GCTGCGGAGAGCCGATTGGACAGTTCCCCACGGGTCCGCGATGCACGCCC
TCTCGGCGGCGCTCGATGCCGCTGCCGGCTCCACCTTGCAGGTACGAGCC
ACCCAAGTCTGAGGTGACGACGCCGCTGCGGAGAGCCGATTGGACAGTTC
CCCACGGGTCCGCGATGCACGCCCTCTCGGCGGCGCTCGATGCCGCTGCC
GGCTCCACCTTGTGTTCTTCGCCCCTTGACATGCGCGAGGAGAGACGTAA
GAGCATCCGGCAGCGCTACCGGGAGCGGCTGGACCACTTCCGACTCATAC
AGTGTTCTTCGCCCCTTGACATGCGCGAGGAGAGACGTAAGAGCATCCGG
CAGCGCTACCGGGAGCGGCTGGACCACTTCCGACTCATACAG
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