mRNA_M-pyrifera_M_contig103167.668.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103167.668.1
Unique NamemRNA_M-pyrifera_M_contig103167.668.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103167.668.1 vs. uniprot
Match: A0A6I6AGE5_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AGE5_9PLAN)

HSP 1 Score: 167 bits (423), Expect = 5.360e-51
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 1
Query:    1 GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALGDLLHEKDTTARLVLEIDGKSYTGEISAHDXXXXXXXGEKHA 282
            GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALGDLLHEKDTTARLVLEIDGKSYTGEISAH+ XXXXXXGEKHA
Sbjct:   91 GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALGDLLHEKDTTARLVLEIDGKSYTGEISAHNHXXXXXXGEKHA 184          
BLAST of mRNA_M-pyrifera_M_contig103167.668.1 vs. uniprot
Match: A0A518FTR0_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FTR0_9PLAN)

HSP 1 Score: 144 bits (362), Expect = 1.110e-41
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 1
Query:    1 GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALGDLLHEKDTTARLVLEIDGKSYTGEISAHDXXXXXXXG----EKHAH 285
            GAAKK+VPIKAESILVNVKHDGKG QF+LTAAPEESDP G+SSRFV+KEK LGDLLH + TTARLVLEIDGKSYTG+I+AHDXXXXXXX     EKHAH
Sbjct:   91 GAAKKSVPIKAESILVNVKHDGKGDQFSLTAAPEESDPMGQSSRFVIKEKTLGDLLHGEGTTARLVLEIDGKSYTGDIAAHDXXXXXXXXXXXXEKHAH 189          
BLAST of mRNA_M-pyrifera_M_contig103167.668.1 vs. uniprot
Match: A6BZW7_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6BZW7_9PLAN)

HSP 1 Score: 133 bits (334), Expect = 1.730e-37
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1
Query:    1 GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALGDLLHEKDTTARLVLEIDGKSYTGEISAHDXXXXXXXGEKHAH 285
            GAAK +VPI AES+LVNVKHDGKG QFTLTA PE+ DP+G+SS+F   EK LG+LL +KDTTARLVLEIDGKS++GEI AHDXXXXXXX EKHAH
Sbjct:   91 GAAKASVPIAAESVLVNVKHDGKGQQFTLTATPEQGDPEGKSSKFSTLEKTLGELLDKKDTTARLVLEIDGKSFSGEIDAHDXXXXXXXDEKHAH 185          
BLAST of mRNA_M-pyrifera_M_contig103167.668.1 vs. uniprot
Match: A0A517RJZ9_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A517RJZ9_9PLAN)

HSP 1 Score: 133 bits (334), Expect = 1.780e-37
Identity = 73/97 (75.26%), Postives = 86/97 (88.66%), Query Frame = 1
Query:    1 GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALGDLLHEKDTTARLVLEIDGKSYTGEISAHDXXXXXXXG--EKHAH 285
            GAAK +VPIKAES+L+NVKHDGKG QFTL A+PE+ DP+G+SS+F+ ++K LG+LLHE DTTARLVLEIDGKS+TGEI AHDXXXXXXX   EKHAH
Sbjct:   90 GAAKASVPIKAESVLINVKHDGKGQQFTLAASPEKGDPEGKSSKFMTEDKTLGELLHEGDTTARLVLEIDGKSFTGEIDAHDXXXXXXXXXDEKHAH 186          
BLAST of mRNA_M-pyrifera_M_contig103167.668.1 vs. uniprot
Match: A0A517VI88_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VI88_9PLAN)

HSP 1 Score: 132 bits (331), Expect = 4.930e-37
Identity = 72/95 (75.79%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    1 GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALGDLLHEKDTTARLVLEIDGKSYTGEISAHDXXXXXXXGEKHAH 285
            GAAK +VP  AES+ VNVKHDGKG QFTL AAPE+ DP+G+SS+F  ++K LG+LL EKDTTARLVLEIDGKS+TGEI AHDXXXXXXX EKHAH
Sbjct:   91 GAAKASVPSTAESVQVNVKHDGKGQQFTLAAAPEQGDPEGKSSKFTTQDKTLGELLDEKDTTARLVLEIDGKSFTGEIDAHDXXXXXXXDEKHAH 185          
BLAST of mRNA_M-pyrifera_M_contig103167.668.1 vs. uniprot
Match: A0A2E2CB50_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CB50_9PLAN)

HSP 1 Score: 130 bits (327), Expect = 1.780e-36
Identity = 69/95 (72.63%), Postives = 83/95 (87.37%), Query Frame = 1
Query:    1 GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALGDLLHEKDTTARLVLEIDGKSYTGEISAHDXXXXXXXGEKHAH 285
            GAA+  VPI AES+L+NVKHDGKG QFTL A P++ DP+G+SS+F  ++KALG+LLHE+ TTARLVLEIDGKS++GEI AHDXXXXXXX EKHAH
Sbjct:   87 GAARAGVPIAAESVLINVKHDGKGQQFTLAAIPDQRDPEGKSSKFATQDKALGELLHEEGTTARLVLEIDGKSFSGEIDAHDXXXXXXXDEKHAH 181          
BLAST of mRNA_M-pyrifera_M_contig103167.668.1 vs. uniprot
Match: A0A517WQS4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WQS4_9PLAN)

HSP 1 Score: 117 bits (294), Expect = 1.530e-31
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    1 GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALGDLLHEKDTTARLVLEIDGKSYTGEISA 240
            G AKK+VPIKAE +L+N KHDGKG QFTL A+PE +DP+G+SSRF  +EK L  LLHE+D TARLVLEIDGKSY GEI A
Sbjct:   90 GTAKKSVPIKAERLLINTKHDGKGQQFTLAASPESTDPEGQSSRFSTQEKELEKLLHEEDATARLVLEIDGKSYNGEIHA 169          
BLAST of mRNA_M-pyrifera_M_contig103167.668.1 vs. uniprot
Match: A0A2E2C4Y7_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C4Y7_9PLAN)

HSP 1 Score: 94.7 bits (234), Expect = 1.750e-22
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALGDLLHEKDTTARLVLEIDGKSYTGEI 234
            G AK  VPI ++ IL+N+KHDG+G QF LTA P++ DP+G+SSRFV  +K L + LH KD  ARL L I GKSY+G+I
Sbjct:   88 GTAKNVVPIDSKEILINLKHDGRGEQFKLTALPDKGDPEGQSSRFVSNDKELNEDLHAKDADARLALRIAGKSYSGKI 165          
BLAST of mRNA_M-pyrifera_M_contig103167.668.1 vs. uniprot
Match: A0A5C9BCP5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9BCP5_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 4.240e-20
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALG-DLLHEKDTTARLVLEIDGKSYTGEISAHD 246
            G AKK VPI A  + +NVKHDGKG QF + AAP+E D +G++SRFV  +K L  D+ HE    ARLV+EIDGKS+TGEI  HD
Sbjct:   86 GEAKKAVPITATELTINVKHDGKGEQFKVAAAPQEGDGEGKASRFVSDDKELAEDIEHE----ARLVVEIDGKSFTGEIK-HD 163          
BLAST of mRNA_M-pyrifera_M_contig103167.668.1 vs. uniprot
Match: A0A1P8WQW9_9PLAN (Uncharacterized protein n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WQW9_9PLAN)

HSP 1 Score: 84.3 bits (207), Expect = 2.590e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEKALGDLLHEKDTTARLVLEIDGKSYTGEIS-AHD 246
            G+A K V I A  + +NV HDGK  QFTLTA P+E D  G+SSRFV  +K L + L E+ T  R+V++I+GKSY GEI+ +HD
Sbjct:   90 GSATKQVAIDATELTINVSHDGKPEQFTLTAKPDEGDEAGKSSRFVSDDKELMEHLDEEGTNPRMVVKINGKSYRGEITHSHD 172          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103167.668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6AGE5_9PLAN5.360e-5197.87Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518FTR0_9PLAN1.110e-4182.83Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A6BZW7_9PLAN1.730e-3776.84Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A517RJZ9_9PLAN1.780e-3775.26Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A517VI88_9PLAN4.930e-3775.79Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A2E2CB50_9PLAN1.780e-3672.63Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A517WQS4_9PLAN1.530e-3171.25Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A2E2C4Y7_9PLAN1.750e-2257.69Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A5C9BCP5_9BACT4.240e-2059.04Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A1P8WQW9_9PLAN2.590e-1853.01Uncharacterized protein n=1 Tax=Fuerstiella marisg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103167contigM-pyrifera_M_contig103167:2..289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score134.4
Seed ortholog evalue2.8e-29
Seed eggNOG ortholog344747.PM8797T_22063
Hectar predicted targeting categoryother localisation
EggNOG OGs2DN3D@1,2J0FR@203682,32VAH@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.2627664-CDS-M-pyrifera_M_contig103167:1..2891622815536.2627664-CDS-M-pyrifera_M_contig103167:1..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103167 2..289 +
1692277453.681781-CDS-M-pyrifera_M_contig103167:1..2891692277453.681781-CDS-M-pyrifera_M_contig103167:1..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103167 2..289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103167.668.1prot_M-pyrifera_M_contig103167.668.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103167 2..289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103167.668.1

>prot_M-pyrifera_M_contig103167.668.1 ID=prot_M-pyrifera_M_contig103167.668.1|Name=mRNA_M-pyrifera_M_contig103167.668.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
GAAKKNVPIKAESILVNVKHDGKGSQFTLTAAPEESDPQGESSRFVLKEK
ALGDLLHEKDTTARLVLEIDGKSYTGEISAHDHDHDHEHGEKHAH*
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mRNA from alignment at M-pyrifera_M_contig103167:2..289+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103167.668.1 ID=mRNA_M-pyrifera_M_contig103167.668.1|Name=mRNA_M-pyrifera_M_contig103167.668.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig103167:2..289+ (Macrocystis pyrifera P11B4 male)
GGTGCCGCGAAAAAGAATGTTCCGATTAAAGCGGAAAGCATTCTCGTGAA CGTCAAGCATGACGGCAAAGGGTCACAGTTCACACTGACCGCTGCACCTG AAGAATCCGATCCCCAGGGGGAATCGTCACGGTTTGTACTGAAAGAGAAG GCCCTGGGAGATCTGCTGCACGAGAAAGATACCACGGCTCGTCTGGTTCT TGAGATCGACGGCAAATCGTACACGGGAGAAATCTCTGCTCACGATCATG ACCACGACCACGAACATGGCGAGAAACACGCCCACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103167:2..289+

>mRNA_M-pyrifera_M_contig103167.668.1 ID=mRNA_M-pyrifera_M_contig103167.668.1|Name=mRNA_M-pyrifera_M_contig103167.668.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig103167:2..289+ (Macrocystis pyrifera P11B4 male)
GGTGCCGCGAAAAAGAATGTTCCGATTAAAGCGGAAAGCATTCTCGTGAA
CGTCAAGCATGACGGCAAAGGGTCACAGTTCACACTGACCGCTGCACCTG
AAGAATCCGATCCCCAGGGGGAATCGTCACGGTTTGTACTGAAAGAGAAG
GCCCTGGGAGATCTGCTGCACGAGAAAGATACCACGGCTCGTCTGGTTCT
TGAGATCGACGGCAAATCGTACACGGGAGAAATCTCTGCTCACGATCATG
ACCACGACCACGAACATGGCGAGAAACACGCCCACTGAGGTGCCGCGAAA
AAGAATGTTCCGATTAAAGCGGAAAGCATTCTCGTGAACGTCAAGCATGA
CGGCAAAGGGTCACAGTTCACACTGACCGCTGCACCTGAAGAATCCGATC
CCCAGGGGGAATCGTCACGGTTTGTACTGAAAGAGAAGGCCCTGGGAGAT
CTGCTGCACGAGAAAGATACCACGGCTCGTCTGGTTCTTGAGATCGACGG
CAAATCGTACACGGGAGAAATCTCTGCTCACGATCATGACCACGACCACG
AACATGGCGAGAAACACGCCCACTGA
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