mRNA_M-pyrifera_M_contig103136.656.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103136.656.1
Unique NamemRNA_M-pyrifera_M_contig103136.656.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig103136.656.1 vs. uniprot
Match: UPI001EAFD0A9 (peroxisomal multifunctional enzyme type 2-like isoform X2 n=1 Tax=Marmota monax TaxID=9995 RepID=UPI001EAFD0A9)

HSP 1 Score: 270 bits (689), Expect = 1.570e-87
Identity = 124/189 (65.61%), Postives = 159/189 (84.13%), Query Frame = 1 
Query:    1 GGEAVPNFDSVEFGEKIVKTAMDAWGRVDIVICNAGILRDVSFVKMTDHDWDLINLVHTKGSYSVVHAAWPIMREQKFGRIIMTTSAAGLYGNHGQTNYSAAKLGILGLANTLAIEGKRRNIHVNTIAPLAGTRMTATVMPPELVQNLKTEYIAPLVMFLCGKECEVTGGVFEVGAGWMASVRWQRSLG 567
            GG+AV N+DSVE GEK+VKTA+DA+GR+D+V+ NAGILRD SF +++D DWD+I  VH +GS+ V  AAW  M++QK+GRIIMT+SA+G+YGN GQ NYSAAKLGILGLANTLAIEG++ NIH NTIAP AG+RMT TVMP +L + LK EY+APL+++LC + CE  GG+FEVGAGW+  +RW+R+LG
Sbjct:   87 GGKAVANYDSVEAGEKVVKTALDAFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGILGLANTLAIEGRKNNIHCNTIAPNAGSRMTQTVMPEDLFEALKPEYVAPLILWLCHESCEENGGLFEVGAGWIGKLRWERTLG 275
[Close]
BLAST of mRNA_M-pyrifera_M_contig103136.656.1 vs. uniprot
Match: UPI001EAFD47B (peroxisomal multifunctional enzyme type 2-like isoform X1 n=2 Tax=Marmota monax TaxID=9995 RepID=UPI001EAFD47B)

HSP 1 Score: 270 bits (689), Expect = 3.950e-87
Identity = 124/189 (65.61%), Postives = 159/189 (84.13%), Query Frame = 1 
Query:    1 GGEAVPNFDSVEFGEKIVKTAMDAWGRVDIVICNAGILRDVSFVKMTDHDWDLINLVHTKGSYSVVHAAWPIMREQKFGRIIMTTSAAGLYGNHGQTNYSAAKLGILGLANTLAIEGKRRNIHVNTIAPLAGTRMTATVMPPELVQNLKTEYIAPLVMFLCGKECEVTGGVFEVGAGWMASVRWQRSLG 567
            GG+AV N+DSVE GEK+VKTA+DA+GR+D+V+ NAGILRD SF +++D DWD+I  VH +GS+ V  AAW  M++QK+GRIIMT+SA+G+YGN GQ NYSAAKLGILGLANTLAIEG++ NIH NTIAP AG+RMT TVMP +L + LK EY+APL+++LC + CE  GG+FEVGAGW+  +RW+R+LG
Sbjct:  117 GGKAVANYDSVEAGEKVVKTALDAFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGILGLANTLAIEGRKNNIHCNTIAPNAGSRMTQTVMPEDLFEALKPEYVAPLILWLCHESCEENGGLFEVGAGWIGKLRWERTLG 305
[Close]
BLAST of mRNA_M-pyrifera_M_contig103136.656.1 vs. uniprot
Match: A0A2K6CDL5_MACNE (Hydroxysteroid 17-beta dehydrogenase 4 n=2 Tax=Cercopithecinae TaxID=9528 RepID=A0A2K6CDL5_MACNE)

HSP 1 Score: 268 bits (685), Expect = 4.620e-87
Identity = 123/189 (65.08%), Postives = 161/189 (85.19%), Query Frame = 1 
Query:    1 GGEAVPNFDSVEFGEKIVKTAMDAWGRVDIVICNAGILRDVSFVKMTDHDWDLINLVHTKGSYSVVHAAWPIMREQKFGRIIMTTSAAGLYGNHGQTNYSAAKLGILGLANTLAIEGKRRNIHVNTIAPLAGTRMTATVMPPELVQNLKTEYIAPLVMFLCGKECEVTGGVFEVGAGWMASVRWQRSLG 567
            GG+AV ++DSVE GEK+VKTA+DA+GR+D+V+ NAGILRD SF +++D DWD+I+ VH +GS+ V  AAW  M++QK+GRIIMT+SA+G+YGN GQ NYSAAKLG+LGLAN+LAIEG++ NIH NTIAP AG+RMT TVMP +LV+ LK EY+APLV++LC + CE  GG+FEVGAGW+  +RW+R+LG
Sbjct:   66 GGKAVASYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWDHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLG 254
[Close]
BLAST of mRNA_M-pyrifera_M_contig103136.656.1 vs. uniprot
Match: UPI0004F01A70 (peroxisomal multifunctional enzyme type 2-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI0004F01A70)

HSP 1 Score: 266 bits (680), Expect = 1.280e-86
Identity = 123/189 (65.08%), Postives = 158/189 (83.60%), Query Frame = 1 
Query:    1 GGEAVPNFDSVEFGEKIVKTAMDAWGRVDIVICNAGILRDVSFVKMTDHDWDLINLVHTKGSYSVVHAAWPIMREQKFGRIIMTTSAAGLYGNHGQTNYSAAKLGILGLANTLAIEGKRRNIHVNTIAPLAGTRMTATVMPPELVQNLKTEYIAPLVMFLCGKECEVTGGVFEVGAGWMASVRWQRSLG 567
            GG+AVPN+DSVE GEK+VKTA++A+GR+DIVI NAGILRD SFV+++D DWD+I+ +H +GS+ V  AAW  M+ QKFGRIIMT+SAAG+YGN GQ NYSAAKLG+LGL+NT+AIEG++ NIH NTIAP AG+R+T TVMP +L+   K EY+APLV++LC + C   G +FEVGAGW+  +RW+RSLG
Sbjct:   46 GGKAVPNYDSVEDGEKLVKTALEAFGRIDIVINNAGILRDRSFVRISDEDWDIIHRIHLRGSFLVTRAAWNHMKNQKFGRIIMTSSAAGIYGNFGQANYSAAKLGVLGLSNTIAIEGRKYNIHCNTIAPTAGSRLTQTVMPQDLIDAFKPEYVAPLVVWLCHESCMENGSLFEVGAGWIGKLRWERSLG 234
[Close]
BLAST of mRNA_M-pyrifera_M_contig103136.656.1 vs. uniprot
Match: A0A0S7K198_9TELE (DHB4 n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7K198_9TELE)

HSP 1 Score: 265 bits (676), Expect = 3.090e-86
Identity = 121/190 (63.68%), Postives = 160/190 (84.21%), Query Frame = 1 
Query:    1 GGEAVPNFDSVEFGEKIVKTAMDAWGRVDIVICNAGILRDVSFVKMTDHDWDLINLVHTKGSYSVVHAAWPIMREQKFGRIIMTTSAAGLYGNHGQTNYSAAKLGILGLANTLAIEGKRRNIHVNTIAPLAGTRMTATVMPPELVQNLKTEYIAPLVMFLCGKECEVTGGVFEVGAGWMASVRWQRSLGK 570
            GG+AV N+DSVE GEK++++A+DA+GR+D+V+ NAGILRD SF + +D DWDLI+ VH +GS+ V  AAW  M++Q FGRIIMT SAAG+YGN GQ NYSAAKLG+LGLANTLAIEG++ NIH NTIAP+AG+R+T TVMPP+LV +LK EY+APLV++LC ++C+  GG+FE GAGW+  +RW+R+ G+
Sbjct:   64 GGKAVANYDSVEDGEKLIQSALDAFGRIDVVVNNAGILRDRSFARTSDLDWDLIHRVHLRGSFLVTRAAWNHMKKQHFGRIIMTASAAGIYGNFGQANYSAAKLGLLGLANTLAIEGRKYNIHCNTIAPVAGSRLTETVMPPDLVASLKPEYVAPLVLWLCHEQCQENGGLFEAGAGWIGKLRWERTEGR 253
[Close]
BLAST of mRNA_M-pyrifera_M_contig103136.656.1 vs. uniprot
Match: UPI0001547FC0 (Hydroxysteroid (17-beta) dehydrogenase 4, isoform CRA_a n=1 Tax=Mus musculus TaxID=10090 RepID=UPI0001547FC0)

HSP 1 Score: 265 bits (677), Expect = 3.100e-86
Identity = 121/189 (64.02%), Postives = 158/189 (83.60%), Query Frame = 1 
Query:    1 GGEAVPNFDSVEFGEKIVKTAMDAWGRVDIVICNAGILRDVSFVKMTDHDWDLINLVHTKGSYSVVHAAWPIMREQKFGRIIMTTSAAGLYGNHGQTNYSAAKLGILGLANTLAIEGKRRNIHVNTIAPLAGTRMTATVMPPELVQNLKTEYIAPLVMFLCGKECEVTGGVFEVGAGWMASVRWQRSLG 567
            GG+AV N+DSVE GEK+VKTA+D +GR+D+V+ NAGILRD SF +++D DWD+I+ VH +GS+ V  AAW  M++Q +GRI+MT+SA+G+YGN GQ NYSAAKLGILGL NTLAIEG++ NIH NTIAP AG+RMT TV+P +LV+ LK EY+APLV++LC + CE  GG+FEVGAGW+  +RW+R+LG
Sbjct:   66 GGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIHRVHLRGSFQVTRAAWDHMKKQNYGRILMTSSASGIYGNFGQANYSAAKLGILGLCNTLAIEGRKNNIHCNTIAPNAGSRMTETVLPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLG 254
[Close]
BLAST of mRNA_M-pyrifera_M_contig103136.656.1 vs. uniprot
Match: Q06AS2_ACASC (17-beta-hydroxysteroid dehydrogenase type 4 (Fragment) n=1 Tax=Acanthopagrus schlegelii TaxID=72011 RepID=Q06AS2_ACASC)

HSP 1 Score: 263 bits (671), Expect = 3.120e-86
Identity = 119/186 (63.98%), Postives = 157/186 (84.41%), Query Frame = 1 
Query:    1 GGEAVPNFDSVEFGEKIVKTAMDAWGRVDIVICNAGILRDVSFVKMTDHDWDLINLVHTKGSYSVVHAAWPIMREQKFGRIIMTTSAAGLYGNHGQTNYSAAKLGILGLANTLAIEGKRRNIHVNTIAPLAGTRMTATVMPPELVQNLKTEYIAPLVMFLCGKECEVTGGVFEVGAGWMASVRWQR 558
            GG+AV N+DSVE GEK+++ A+DA+GR+D+V+ NAGILRD +F + +D DWDLI+ VH +GS+ V  AAW  M+ QKFGRIIMTTSAAG+YGN GQ NYSAAKLG+LGLANTLAIEG++ NI  NT+APLAG+R+T T+MPP++V +LK EY+APLV++LC ++C+  GG+FEVGAGW+  +RW+R
Sbjct:   51 GGKAVANYDSVEDGEKLIQAALDAFGRIDVVVNNAGILRDRTFARTSDLDWDLIHRVHLRGSFMVTRAAWNHMKNQKFGRIIMTTSAAGIYGNFGQANYSAAKLGLLGLANTLAIEGRKYNIFCNTVAPLAGSRLTETIMPPDIVASLKPEYVAPLVLWLCHEQCQENGGLFEVGAGWIGKLRWER 236
[Close]
BLAST of mRNA_M-pyrifera_M_contig103136.656.1 vs. uniprot
Match: A0A7L2E1X2_ANTMN (DHB4 enzyme (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7L2E1X2_ANTMN)

HSP 1 Score: 268 bits (684), Expect = 3.770e-86
Identity = 124/189 (65.61%), Postives = 158/189 (83.60%), Query Frame = 1 
Query:    1 GGEAVPNFDSVEFGEKIVKTAMDAWGRVDIVICNAGILRDVSFVKMTDHDWDLINLVHTKGSYSVVHAAWPIMREQKFGRIIMTTSAAGLYGNHGQTNYSAAKLGILGLANTLAIEGKRRNIHVNTIAPLAGTRMTATVMPPELVQNLKTEYIAPLVMFLCGKECEVTGGVFEVGAGWMASVRWQRSLG 567
            GG+AVPN+DSVE GEK+VKTA++A+GR+DIVI NAGILRD SFV+++D DWD+I+ +H +GS+ V  AAW  M+ QKFGRIIMT+SAAG+YGN GQ NYSAAKLG+LGLANT+AIEG++ NIH NTIAP AG+R+T TVMP +L+   K EY+APLV++LC + C   G +FEVGAGW+  +RW+RSLG
Sbjct:   47 GGKAVPNYDSVEDGEKLVKTALEAFGRIDIVINNAGILRDRSFVRISDEDWDIIHRIHLRGSFLVTRAAWNQMKNQKFGRIIMTSSAAGIYGNFGQANYSAAKLGLLGLANTIAIEGRKYNIHCNTIAPTAGSRLTQTVMPQDLIDAFKPEYVAPLVLWLCHESCAENGSLFEVGAGWIGKLRWERSLG 235
[Close]
BLAST of mRNA_M-pyrifera_M_contig103136.656.1 vs. uniprot
Match: A0A7L3EDQ8_9PASS (DHB4 enzyme (Fragment) n=1 Tax=Chaetops frenatus TaxID=221966 RepID=A0A7L3EDQ8_9PASS)

HSP 1 Score: 268 bits (686), Expect = 6.450e-86
Identity = 125/189 (66.14%), Postives = 158/189 (83.60%), Query Frame = 1 
Query:    1 GGEAVPNFDSVEFGEKIVKTAMDAWGRVDIVICNAGILRDVSFVKMTDHDWDLINLVHTKGSYSVVHAAWPIMREQKFGRIIMTTSAAGLYGNHGQTNYSAAKLGILGLANTLAIEGKRRNIHVNTIAPLAGTRMTATVMPPELVQNLKTEYIAPLVMFLCGKECEVTGGVFEVGAGWMASVRWQRSLG 567
            GG+AVPN+DSVE GEK+VKTA++A+GR+DIVI NAGILRD SFV+++D DWD+I+ +H +GS+ V  AAW  M+ QKFGRIIMT+SAAG+YGN GQ NYSAAKLG+LGLANT+AIEG++ NIH NTIAP AG+R+T TVMP +LV   K EY+APLV++LC + C   G +FEVGAGW+  +RW+RSLG
Sbjct:   32 GGKAVPNYDSVEDGEKLVKTALEAFGRIDIVINNAGILRDRSFVRISDEDWDIIHRIHLRGSFLVTRAAWNHMKNQKFGRIIMTSSAAGIYGNFGQANYSAAKLGLLGLANTIAIEGRKHNIHCNTIAPTAGSRLTQTVMPQDLVDAFKPEYVAPLVVWLCHESCAENGSLFEVGAGWIGKLRWERSLG 220
[Close]
BLAST of mRNA_M-pyrifera_M_contig103136.656.1 vs. uniprot
Match: UPI0007B8E5AF (peroxisomal multifunctional enzyme type 2 n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=UPI0007B8E5AF)

HSP 1 Score: 271 bits (692), Expect = 1.160e-85
Identity = 125/192 (65.10%), Postives = 162/192 (84.38%), Query Frame = 1 
Query:    1 GGEAVPNFDSVEFGEKIVKTAMDAWGRVDIVICNAGILRDVSFVKMTDHDWDLINLVHTKGSYSVVHAAWPIMREQKFGRIIMTTSAAGLYGNHGQTNYSAAKLGILGLANTLAIEGKRRNIHVNTIAPLAGTRMTATVMPPELVQNLKTEYIAPLVMFLCGKECEVTGGVFEVGAGWMASVRWQRSLGKAL 576
            GG+AV N+DSVE GEK+++TA+DA+GR+DIV+ NAGILRD SF + +D DWDLI  VH +GS+ V  AAW  M+ QKFGRIIMT+SAAG+YGN GQ NYSAAKLG+LGL+NTLAIEG++ +IH NTIAP AG+R+T TVMPP+LVQ+L+ EY+APLV++LC + C+  GG+FEVGAGW+  +RW+RSLG+ +
Sbjct:   66 GGKAVANYDSVEDGEKLIQTALDAFGRIDIVVNNAGILRDRSFARTSDADWDLIQRVHLRGSFLVTRAAWNHMKNQKFGRIIMTSSAAGIYGNFGQANYSAAKLGLLGLSNTLAIEGQKYSIHCNTIAPTAGSRLTETVMPPDLVQSLRAEYVAPLVLWLCHEACQENGGLFEVGAGWIGKLRWERSLGRTV 257
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103136.656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001EAFD0A91.570e-8765.61peroxisomal multifunctional enzyme type 2-like iso... [more]
UPI001EAFD47B3.950e-8765.61peroxisomal multifunctional enzyme type 2-like iso... [more]
A0A2K6CDL5_MACNE4.620e-8765.08Hydroxysteroid 17-beta dehydrogenase 4 n=2 Tax=Cer... [more]
UPI0004F01A701.280e-8665.08peroxisomal multifunctional enzyme type 2-like n=2... [more]
A0A0S7K198_9TELE3.090e-8663.68DHB4 n=1 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
UPI0001547FC03.100e-8664.02Hydroxysteroid (17-beta) dehydrogenase 4, isoform ... [more]
Q06AS2_ACASC3.120e-8663.9817-beta-hydroxysteroid dehydrogenase type 4 (Fragm... [more]
A0A7L2E1X2_ANTMN3.770e-8665.61DHB4 enzyme (Fragment) n=2 Tax=Passeriformes TaxID... [more]
A0A7L3EDQ8_9PASS6.450e-8666.14DHB4 enzyme (Fragment) n=1 Tax=Chaetops frenatus T... [more]
UPI0007B8E5AF1.160e-8565.10peroxisomal multifunctional enzyme type 2 n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103136contigM-pyrifera_M_contig103136:64..654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score277.3
Seed ortholog evalue5.4e-72
Seed eggNOG ortholog7955.ENSDARP00000046430
Preferred nameHSD17B4
KEGG rclassRC00089,RC00770,RC01217
KEGG koko:K12405
KEGG ReactionR04809,R04810,R04812,R04813,R09698
KEGG Pathwayko00120,ko01100,ko04146,map00120,map01100,map04146
KEGG ModuleM00104
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000038,GO:0002064,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0003857,GO:0004303,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0006066,GO:0006082,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006635,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007548,GO:0007568,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008209,GO:0008210,GO:0008406,GO:0008584,GO:0009056,GO:0009058,GO:0009062,GO:0009117,GO:0009150,GO:0009259,GO:0009719,GO:0009725,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010817,GO:0010883,GO:0010888,GO:0014070,GO:0016042,GO:0016054,GO:0016125,GO:0016137,GO:0016138,GO:0016229,GO:0016491,GO:0016508,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0018812,GO:0019236,GO:0019395,GO:0019637,GO:0019693,GO:0019748,GO:0019752,GO:0022414,GO:0022611,GO:0030154,GO:0030258,GO:0030283,GO:0030855,GO:0031907,GO:0031974,GO:0032501,GO:0032502,GO:0032787,GO:0032879,GO:0033764,GO:0033865,GO:0033875,GO:0033993,GO:0034032,GO:0034440,GO:0034641,GO:0034754,GO:0035337,GO:0035383,GO:0036111,GO:0036112,GO:0040008,GO:0040024,GO:0042221,GO:0042445,GO:0042446,GO:0042493,GO:0042579,GO:0042802,GO:0042803,GO:0042810,GO:0042811,GO:0043053,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044594,GO:0045137,GO:0045927,GO:0046395,GO:0046483,GO:0046546,GO:0046661,GO:0046983,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048545,GO:0048580,GO:0048582,GO:0048608,GO:0048638,GO:0048639,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0051716,GO:0055086,GO:0055114,GO:0055115,GO:0060008,GO:0060009,GO:0060429,GO:0061062,GO:0061063,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071310,GO:0071407,GO:0071704,GO:0072329,GO:0072521,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901568,GO:1901575,GO:1901576,GO:1901615,GO:1901657,GO:1901659,GO:1902652,GO:1904069,GO:1904070,GO:1905952,GO:1905953,GO:2000026
EggNOG free text desc.Hydroxysteroid (17-beta) dehydrogenase 4
EggNOG OGs2QPX4@2759,39K2N@33154,3BD1Y@33208,3CX6W@33213,4895R@7711,494M6@7742,4A048@7898,COG2030@1
EC1.1.1.35,4.2.1.107,4.2.1.119
COG Functional cat.Q
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size591
Cds size591
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.7012331-CDS-M-pyrifera_M_contig103136:63..6541622815535.7012331-CDS-M-pyrifera_M_contig103136:63..654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103136 64..654 -
1692277453.5166018-CDS-M-pyrifera_M_contig103136:63..6541692277453.5166018-CDS-M-pyrifera_M_contig103136:63..654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103136 64..654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103136.656.1prot_M-pyrifera_M_contig103136.656.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103136 64..654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103136.656.1

>prot_M-pyrifera_M_contig103136.656.1 ID=prot_M-pyrifera_M_contig103136.656.1|Name=mRNA_M-pyrifera_M_contig103136.656.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
GGEAVPNFDSVEFGEKIVKTAMDAWGRVDIVICNAGILRDVSFVKMTDHD
WDLINLVHTKGSYSVVHAAWPIMREQKFGRIIMTTSAAGLYGNHGQTNYS
AAKLGILGLANTLAIEGKRRNIHVNTIAPLAGTRMTATVMPPELVQNLKT
EYIAPLVMFLCGKECEVTGGVFEVGAGWMASVRWQRSLGKALFVCS*
back to top

mRNA from alignment at M-pyrifera_M_contig103136:64..654-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103136.656.1 ID=mRNA_M-pyrifera_M_contig103136.656.1|Name=mRNA_M-pyrifera_M_contig103136.656.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=591bp|location=Sequence derived from alignment at M-pyrifera_M_contig103136:64..654- (Macrocystis pyrifera P11B4 male)
GGTGGCGAGGCCGTGCCTAATTTTGACTCAGTGGAGTTCGGCGAGAAGAT
AGTCAAGACAGCAATGGATGCCTGGGGCCGCGTCGACATTGTCATCTGCA
ACGCAGGCATTCTCAGGGACGTGAGCTTCGTGAAGATGACCGACCATGAC
TGGGACCTCATCAACCTCGTGCACACGAAGGGTTCCTACTCGGTCGTTCA
CGCCGCTTGGCCGATCATGCGGGAGCAGAAGTTCGGTCGTATCATCATGA
CCACATCCGCTGCCGGCCTCTATGGCAACCATGGCCAGACGAACTACTCG
GCGGCCAAGCTCGGCATTCTCGGCCTCGCCAACACGCTTGCCATCGAAGG
CAAGCGGAGGAATATTCATGTCAACACCATCGCTCCCCTCGCTGGAACGA
GGATGACTGCCACCGTGATGCCACCCGAGCTGGTCCAGAACCTCAAGACC
GAGTACATTGCCCCCTTGGTCATGTTCCTCTGTGGCAAAGAGTGTGAGGT
GACGGGCGGCGTCTTCGAGGTCGGTGCCGGGTGGATGGCATCCGTCCGCT
GGCAGAGAAGTCTTGGTAAGGCCCTCTTCGTTTGCTCATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig103136:64..654-

>mRNA_M-pyrifera_M_contig103136.656.1 ID=mRNA_M-pyrifera_M_contig103136.656.1|Name=mRNA_M-pyrifera_M_contig103136.656.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig103136:64..654- (Macrocystis pyrifera P11B4 male)
GGTGGCGAGGCCGTGCCTAATTTTGACTCAGTGGAGTTCGGCGAGAAGAT
AGTCAAGACAGCAATGGATGCCTGGGGCCGCGTCGACATTGTCATCTGCA
ACGCAGGCATTCTCAGGGACGTGAGCTTCGTGAAGATGACCGACCATGAC
TGGGACCTCATCAACCTCGTGCACACGAAGGGTTCCTACTCGGTCGTTCA
CGCCGCTTGGCCGATCATGCGGGAGCAGAAGTTCGGTCGTATCATCATGA
CCACATCCGCTGCCGGCCTCTATGGCAACCATGGCCAGACGAACTACTCG
GCGGCCAAGCTCGGCATTCTCGGCCTCGCCAACACGCTTGCCATCGAAGG
CAAGCGGAGGAATATTCATGTCAACACCATCGCTCCCCTCGCTGGAACGA
GGATGACTGCCACCGTGATGCCACCCGAGCTGGTCCAGAACCTCAAGACC
GAGTACATTGCCCCCTTGGTCATGTTCCTCTGTGGCAAAGAGTGTGAGGT
GACGGGCGGCGTCTTCGAGGTCGGTGCCGGGTGGATGGCATCCGTCCGCT
GGCAGAGAAGTCTTGGTAAGGCCCTCTTCGTTTGCTCATGAGGTGGCGAG
GCCGTGCCTAATTTTGACTCAGTGGAGTTCGGCGAGAAGATAGTCAAGAC
AGCAATGGATGCCTGGGGCCGCGTCGACATTGTCATCTGCAACGCAGGCA
TTCTCAGGGACGTGAGCTTCGTGAAGATGACCGACCATGACTGGGACCTC
ATCAACCTCGTGCACACGAAGGGTTCCTACTCGGTCGTTCACGCCGCTTG
GCCGATCATGCGGGAGCAGAAGTTCGGTCGTATCATCATGACCACATCCG
CTGCCGGCCTCTATGGCAACCATGGCCAGACGAACTACTCGGCGGCCAAG
CTCGGCATTCTCGGCCTCGCCAACACGCTTGCCATCGAAGGCAAGCGGAG
GAATATTCATGTCAACACCATCGCTCCCCTCGCTGGAACGAGGATGACTG
CCACCGTGATGCCACCCGAGCTGGTCCAGAACCTCAAGACCGAGTACATT
GCCCCCTTGGTCATGTTCCTCTGTGGCAAAGAGTGTGAGGTGACGGGCGG
CGTCTTCGAGGTCGGTGCCGGGTGGATGGCATCCGTCCGCTGGCAGAGAA
GTCTTGGTAAGGCCCTCTTCGTTTGCTCATGA
back to top