mRNA_M-pyrifera_M_contig103128.655.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103128.655.1
Unique NamemRNA_M-pyrifera_M_contig103128.655.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103128.655.1 vs. uniprot
Match: A0A1W0A7N3_9STRA (C2H2-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7N3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.160e-7
Identity = 24/43 (55.81%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   16 RRKRQRRLASQIERKHPCSFSGCKKSYGSEGALKLHVRRKHSS 144
            ++KR+RR A+QI+RK  C+++GC+K+YGSEG+L  H+R KH S
Sbjct:   73 KKKRRRRTAAQIDRKWSCTYTGCRKAYGSEGSLTQHMRLKHRS 115
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BLAST of mRNA_M-pyrifera_M_contig103128.655.1 vs. uniprot
Match: A0A067D2I8_SAPPC (C2H2-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D2I8_SAPPC)

HSP 1 Score: 54.3 bits (129), Expect = 2.980e-7
Identity = 23/41 (56.10%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   16 RRKRQRRLASQIERKHPCSFSGCKKSYGSEGALKLHVRRKH 138
            ++KR+RR A+QI+RK  C+++GC+K+YGSEG+L  H+R KH
Sbjct:   59 KKKRRRRTAAQIDRKWTCTYTGCRKAYGSEGSLTQHMRLKH 99
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BLAST of mRNA_M-pyrifera_M_contig103128.655.1 vs. uniprot
Match: A0A2P6NJI1_9EUKA (C2H2-type domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NJI1_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 9.090e-7
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 PIPQIRRKRQRRLASQIERKHPCSFSGCKKSYGSEGALKLHVRRKHSS 144
            P+PQ + K+ RR    +ER+  C   GC K+YGSEGALK H++ KH S
Sbjct:  192 PLPQFKPKKVRRKREDVERRCNCPIKGCIKAYGSEGALKTHIKIKHPS 239
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BLAST of mRNA_M-pyrifera_M_contig103128.655.1 vs. uniprot
Match: A0A151ZRX2_9MYCE (Transcription regulatory protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZRX2_9MYCE)

HSP 1 Score: 52.8 bits (125), Expect = 1.040e-6
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 IPQIRRKRQRRLASQIERKHPCSFSGCKKSYGSEGALKLHVRRKH 138
            I Q  +KR RR AS+I+R + C  + C KSYG+EGALK+H++ KH
Sbjct:  241 IDQSLKKRHRRTASEIDRSYKCYIAPCNKSYGTEGALKMHIKLKH 285
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BLAST of mRNA_M-pyrifera_M_contig103128.655.1 vs. uniprot
Match: A0A3R7WLH1_9STRA (C2H2-type domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7WLH1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 PIPQIRRKRQRRLASQIERKHPCSFSGCKKSYGSEGALKLHVRRKH 138
            P+    +KR+RR A++I+RKH C ++GC K+YGSEG+L  H + KH
Sbjct:   82 PLSSTSKKRRRRSAAEIDRKHKCPYTGCLKAYGSEGSLIHHQKLKH 127
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BLAST of mRNA_M-pyrifera_M_contig103128.655.1 vs. uniprot
Match: A0A8J4UWG6_9MYCE (C2H2-type domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UWG6_9MYCE)

HSP 1 Score: 52.0 bits (123), Expect = 1.960e-6
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   19 RKRQRRLASQIERKHPCSFSGCKKSYGSEGALKLHVRRKH 138
            +KR RR AS+I+R + C  + C KSYG+EGALK+H++ KH
Sbjct:  260 KKRHRRTASEIDRSYKCYVTSCNKSYGTEGALKMHIKLKH 299
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BLAST of mRNA_M-pyrifera_M_contig103128.655.1 vs. uniprot
Match: Q54PF6_DICDI (C2H2-type domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54PF6_DICDI)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-6
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   19 RKRQRRLASQIERKHPCSFSGCKKSYGSEGALKLHVRRKH 138
            +KR RR AS+IER   C    C KSYG+EGALK+H++ KH
Sbjct:  369 KKRHRRTASEIERGFKCYLPSCNKSYGTEGALKMHIKLKH 408
[Close]
BLAST of mRNA_M-pyrifera_M_contig103128.655.1 vs. uniprot
Match: D3B6R9_POLPP (Transcription regulatory protein SNF5 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B6R9_POLPP)

HSP 1 Score: 49.7 bits (117), Expect = 1.280e-5
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   19 RKRQRRLASQIERKHPCSFSGCKKSYGSEGALKLHVRRKH 138
            +KR RR AS+I+R   C    C KSYG+EGALK+H++ KH
Sbjct:  179 KKRHRRTASEIDRSFKCYIPTCSKSYGTEGALKMHIKLKH 218
[Close]
BLAST of mRNA_M-pyrifera_M_contig103128.655.1 vs. uniprot
Match: Q5ADX8_CANAL (Wor4p n=3 Tax=Candida albicans TaxID=5476 RepID=Q5ADX8_CANAL)

HSP 1 Score: 49.3 bits (116), Expect = 1.750e-5
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 PIPQIRRKRQRRLASQIERKHPCSFSGCKKSYGSEGALKLH-VRRKH 138
            P  Q R +R RR  +QIERK+PCSF GC+KSYGS   L  H V +KH
Sbjct:  166 PAEQKRGRRFRRRFNQIERKYPCSFPGCQKSYGSLNHLNTHIVTKKH 212
[Close]
BLAST of mRNA_M-pyrifera_M_contig103128.655.1 vs. uniprot
Match: B9WEZ3_CANDC (Zinc finger protein, putative n=1 Tax=Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) TaxID=573826 RepID=B9WEZ3_CANDC)

HSP 1 Score: 49.3 bits (116), Expect = 1.750e-5
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 PIPQIRRKRQRRLASQIERKHPCSFSGCKKSYGSEGALKLH-VRRKH 138
            P  Q R +R RR  +QIERK+PCSF GC+KSYGS   L  H V +KH
Sbjct:  174 PAEQKRGRRFRRRFNQIERKYPCSFPGCQKSYGSLNHLNTHIVTKKH 220
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103128.655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A1W0A7N3_9STRA1.160e-755.81C2H2-type domain-containing protein n=1 Tax=Thraus... [more]
A0A067D2I8_SAPPC2.980e-756.10C2H2-type domain-containing protein n=2 Tax=Saprol... [more]
A0A2P6NJI1_9EUKA9.090e-750.00C2H2-type domain-containing protein n=1 Tax=Planop... [more]
A0A151ZRX2_9MYCE1.040e-653.33Transcription regulatory protein n=1 Tax=Tieghemos... [more]
A0A3R7WLH1_9STRA1.430e-650.00C2H2-type domain-containing protein n=2 Tax=Perono... [more]
A0A8J4UWG6_9MYCE1.960e-655.00C2H2-type domain-containing protein n=1 Tax=Polysp... [more]
Q54PF6_DICDI5.010e-657.50C2H2-type domain-containing protein n=1 Tax=Dictyo... [more]
D3B6R9_POLPP1.280e-555.00Transcription regulatory protein SNF5 n=1 Tax=Poly... [more]
Q5ADX8_CANAL1.750e-557.45Wor4p n=3 Tax=Candida albicans TaxID=5476 RepID=Q5... [more]
B9WEZ3_CANDC1.750e-557.45Zinc finger protein, putative n=1 Tax=Candida dubl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103128contigM-pyrifera_M_contig103128:191..334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog157072.XP_008870342.1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.zinc finger
EggNOG OGs2D6AC@1,2S56M@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.656761-CDS-M-pyrifera_M_contig103128:190..3341622815535.656761-CDS-M-pyrifera_M_contig103128:190..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103128 191..334 -
1692277453.505971-CDS-M-pyrifera_M_contig103128:190..3341692277453.505971-CDS-M-pyrifera_M_contig103128:190..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103128 191..334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103128.655.1prot_M-pyrifera_M_contig103128.655.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103128 191..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103128.655.1

>prot_M-pyrifera_M_contig103128.655.1 ID=prot_M-pyrifera_M_contig103128.655.1|Name=mRNA_M-pyrifera_M_contig103128.655.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
PIPQIRRKRQRRLASQIERKHPCSFSGCKKSYGSEGALKLHVRRKHSS
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mRNA from alignment at M-pyrifera_M_contig103128:191..334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103128.655.1 ID=mRNA_M-pyrifera_M_contig103128.655.1|Name=mRNA_M-pyrifera_M_contig103128.655.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig103128:191..334- (Macrocystis pyrifera P11B4 male)
CCTATCCCCCAGATTCGGCGCAAACGGCAGCGCAGGCTCGCCTCCCAGAT
AGAGCGCAAGCACCCGTGCTCCTTCTCTGGATGCAAGAAGTCTTATGGCT
CAGAGGGAGCTCTGAAGTTACACGTACGGCGCAAGCACAGCAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103128:191..334-

>mRNA_M-pyrifera_M_contig103128.655.1 ID=mRNA_M-pyrifera_M_contig103128.655.1|Name=mRNA_M-pyrifera_M_contig103128.655.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig103128:191..334- (Macrocystis pyrifera P11B4 male)
CCTATCCCCCAGATTCGGCGCAAACGGCAGCGCAGGCTCGCCTCCCAGAT
AGAGCGCAAGCACCCGTGCTCCTTCTCTGGATGCAAGAAGTCTTATGGCT
CAGAGGGAGCTCTGAAGTTACACGTACGGCGCAAGCACAGCAGCCCTATC
CCCCAGATTCGGCGCAAACGGCAGCGCAGGCTCGCCTCCCAGATAGAGCG
CAAGCACCCGTGCTCCTTCTCTGGATGCAAGAAGTCTTATGGCTCAGAGG
GAGCTCTGAAGTTACACGTACGGCGCAAGCACAGCAGC
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