mRNA_M-pyrifera_M_contig103066.649.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103066.649.1
Unique NamemRNA_M-pyrifera_M_contig103066.649.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103066.649.1 vs. uniprot
Match: A0A2D4BKG9_PYTIN (U3 small nucleolar RNA-associated protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKG9_PYTIN)

HSP 1 Score: 87.4 bits (215), Expect = 2.990e-17
Identity = 56/147 (38.10%), Postives = 76/147 (51.70%), Query Frame = 1
Query:    1 QGAEDELVRDRVTALAVSPDGRTLATCSKTLFLRTWDLSGIVAAAQTRTRTRVAVPLLRSIRMAASGHKSAVASIAFHPSGELVATGGTDRAVMVWDVTAGFATHRFRGHSGVVHRVWWTGD-FQLASAGATGDSTLRFWSLTEQAQ 438
            Q  EDE  ++     AV P    L T  + L LR WDL                   LR+I+     H++ V S+ F PSG L+ATGG+DRAV V+DV  G+ TH FR HSG+V  V +  D  +L    A+ D+T+R W L  Q++
Sbjct:   71 QDVEDEEQKESFVVFAVRPGHNQLVTAGRNLLLRLWDLETFTC--------------LRTIK----AHQTPVLSLDFDPSGTLLATGGSDRAVKVFDVDKGYCTHNFRRHSGIVTLVQFHPDPKRLLLVSASDDATVRLWDLYAQSE 199          
BLAST of mRNA_M-pyrifera_M_contig103066.649.1 vs. uniprot
Match: A0A7S1CCR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCR9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.740e-15
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 1
Query:   16 ELVRDRVTALAVSPDGRTLATCSKTLFLRTWDLSGIVAAAQTRTRTRVAVPLLRSIRMAASGHKSAVASIAFHPSGELVATGGTDRAVMVWDVTAGFATHRFRGHSGVVHRVWWTGD-FQLASAGATGDSTLRFWSLTE 429
            E V++ VTA  V P  R + T  ++  LR W +       +     + A             H S V  +A+ P+G LVATGG DR VMVWDV  G+ATH FRGH  +V  + +  D  +L     + D+T+R W+L E
Sbjct:   61 EEVQEPVTAFVVHPRRREIVTAHRSGMLRHWSIDVEGGKREVLNEWKGA-------------HSSPVLCMAYDPTGTLVATGGADRIVMVWDVERGYATHHFRGHDAIVTHLHFHPDPKKLMLVSCSEDTTVRLWALRE 186          
BLAST of mRNA_M-pyrifera_M_contig103066.649.1 vs. uniprot
Match: A0A4D9D3B5_9STRA (Utp13 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3B5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.210e-15
Identity = 59/149 (39.60%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   25 RDRVTALAVSPDGRTLATCSKTLFLRTWDLS---GIVAAAQTRTRTRVAVPLL-RSIR----MAASGHKSAVASIAFHPSGELVATGGTDRAVMVWDVTAGFATHRFRGHSGVVHRVWWTGDFQLASA------GATGDSTLRFWSLTE 429
            ++ + A A  P G+ +AT S+ L LR WD     G V A+      R   PL  RS R     A   H++ V ++ +  +G L+ATGG+DR+V VWDV  GF TH FRGH+G+V  V     F   SA       A+ D T+R WSL E
Sbjct:   94 KEEIIAFAAHPSGQEIATASRNLMLRYWDWRSPPGPVEASTAPLSGRS--PLSGRSFRPRCMRAYKAHETPVLAMEYDSTGTLLATGGSDRSVHVWDVPGGFCTHNFRGHTGIVTLV----AFHPESAQRELLFSASDDCTVRVWSLRE 236          
BLAST of mRNA_M-pyrifera_M_contig103066.649.1 vs. uniprot
Match: A0A0P1AAK2_PLAHL (Transducin-like 3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAK2_PLAHL)

HSP 1 Score: 80.9 bits (198), Expect = 5.810e-15
Identity = 52/148 (35.14%), Postives = 77/148 (52.03%), Query Frame = 1
Query:    1 QGAEDELVRDRVTALAVSPDGRT-LATCSKTLFLRTWDLSGIVAAAQTRTRTRVAVPLLRSIRMAASGHKSAVASIAFHPSGELVATGGTDRAVMVWDVTAGFATHRFRGHSGVVHRVWWTGD-FQLASAGATGDSTLRFWSLTEQAQ 438
            Q  +D+ +++     AV P  +  L T  + L LR WDL+                  +R+I+     H + V ++ F PSG L+ATGG+DR V V+DV  GF TH FRGH+G+V  V +  +  QL+   ++ D T+R W L  Q Q
Sbjct:   84 QDVKDDDMKESFVVFAVRPGKKNQLVTAGRNLLLRVWDLNTFEC--------------VRTIK----AHDTPVLAMCFDPSGTLLATGGSDRTVKVFDVDKGFCTHNFRGHAGIVTLVQFHPNAVQLSLVSSSDDGTVRIWDLYTQKQ 213          
BLAST of mRNA_M-pyrifera_M_contig103066.649.1 vs. uniprot
Match: K3WQG2_GLOUD (Utp13 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQG2_GLOUD)

HSP 1 Score: 80.5 bits (197), Expect = 7.510e-15
Identity = 52/145 (35.86%), Postives = 71/145 (48.97%), Query Frame = 1
Query:    1 QGAEDELVRDRVTALAVSPDGRTLATCSKTLFLRTWDLSGIVAAAQTRTRTRVAVPLLRSIRMAASGHKSAVASIAFHPSGELVATGGTDRAVMVWDVTAGFATHRFRGHSGVVHRVWWTGDFQ-LASAGATGDSTLRFWSLTEQ 432
            Q  EDE  ++     AV P    L T  + L LR WDL                   LR+I+     H + V ++ F P+G L+ATGG+DRAV V+ +  G+ TH FR HSG+V  V +  D + L     + DST+R W L  Q
Sbjct:   70 QDIEDEEAKESFVVFAVRPGHNQLVTAGRNLLLRLWDLDTFTC--------------LRTIK----AHDTPVLAMDFDPTGTLLATGGSDRAVKVFXIEKGYCTHNFRRHSGIVTLVKFHPDAKRLQLVSCSDDSTVRIWDLYSQ 196          
BLAST of mRNA_M-pyrifera_M_contig103066.649.1 vs. uniprot
Match: A0A484E7L4_BRELC (Utp13 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7L4_BRELC)

HSP 1 Score: 80.1 bits (196), Expect = 1.080e-14
Identity = 53/148 (35.81%), Postives = 75/148 (50.68%), Query Frame = 1
Query:    1 QGAEDELVRDRVTALAVSPDG-RTLATCSKTLFLRTWDLSGIVAAAQTRTRTRVAVPLLRSIRMAASGHKSAVASIAFHPSGELVATGGTDRAVMVWDVTAGFATHRFRGHSGVVHRVWWTGDF-QLASAGATGDSTLRFWSLTEQAQ 438
            QG++D   ++ +   AV       + T S+ L LR WDL                   L+ +R+    H S V ++   PSG L+ATGG+DR V V+D+  GF TH FRGH+G+V  V +  D  QL+   A+ D T+R W L  Q Q
Sbjct:   81 QGSKDNDTKESIVVFAVRLGKYNQIVTASRNLLLRVWDLE-----------------TLKCVRVI-KAHDSPVLAMDIDPSGTLLATGGSDRTVRVFDIDKGFCTHNFRGHAGIVTLVQFHPDAAQLSLVSASDDLTVRIWDLYTQKQ 210          
BLAST of mRNA_M-pyrifera_M_contig103066.649.1 vs. uniprot
Match: M3WFN9_FELCA (Transducin beta like 3 n=55 Tax=Laurasiatheria TaxID=314145 RepID=M3WFN9_FELCA)

HSP 1 Score: 78.6 bits (192), Expect = 3.670e-14
Identity = 54/137 (39.42%), Postives = 75/137 (54.74%), Query Frame = 1
Query:   25 RDRVTALAVSPDGRTLATCSKTLFLRTWDLSGIVAAAQTRTRTRVAVPLLRSIRMAASGHKSAVASIAFHPSGELVATGGTDRAVMVWDVTAGFATHRFRGHSGVVHRVWWTGD-FQLASAGATGDSTLRFWSLTEQ 432
            ++ +TA  +SPD   L T S+ L L  W       A +  + TR    L ++I      H + VA++AF P+  L+ATGG D AV VWDV   + TH FRG SGVVH V +  D  +L    +  D+T+R WSL +Q
Sbjct:   66 QEDITAFDLSPDDEVLVTASRALLLAQW-------AWREGSITR----LWKAI------HTAPVAAMAFDPTSTLLATGGCDGAVRVWDVVRHYGTHHFRGSSGVVHLVAFHPDPARLLLFSSAVDATIRVWSLQDQ 185          
BLAST of mRNA_M-pyrifera_M_contig103066.649.1 vs. uniprot
Match: A0A7S2DDZ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DDZ1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.860e-14
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    1 QGAEDELVRDRVTALAVSPDGRTLATCSKTLFLRTWDLSGIVAAAQTRTRTRVAVPLLRSIRMAASGHKSAVASIAFHPSGELVATGGTDRAVMVWDVTAGFATHRFRGHSGVVHRV 351
            + AE+E+ R+ +   A+ P+G  L T S+   LR W        A       V+   ++SIR    GH   V S+ +  +G L+ATG  DR   VWD+  GFATH FRGH+G+V  V
Sbjct:   12 EDAEEEIPRESILCFALHPNGLELVTASRNSLLRCW--------AWELNADSVSPKCMKSIR----GHDEPVLSMDYESTGTLLATGSADRTARVWDLRGGFATHNFRGHTGIVTLV 116          
BLAST of mRNA_M-pyrifera_M_contig103066.649.1 vs. uniprot
Match: A0A8C0PP79_CANLF (TNF receptor associated factor 7 n=2 Tax=Canis lupus familiaris TaxID=9615 RepID=A0A8C0PP79_CANLF)

HSP 1 Score: 77.8 bits (190), Expect = 6.770e-14
Identity = 51/137 (37.23%), Postives = 75/137 (54.74%), Query Frame = 1
Query:   25 RDRVTALAVSPDGRTLATCSKTLFLRTWDLSGIVAAAQTRTRTRVAVPLLRSIRMAASGHKSAVASIAFHPSGELVATGGTDRAVMVWDVTAGFATHRFRGHSGVVHRVWWTGD-FQLASAGATGDSTLRFWSLTEQ 432
            ++ +TA  +SPD + L T ++ L L  W       A +  + TR    L ++I      H + VA++AF P+  L+ATGG D AV VWD+   + TH FRG  GVVH V +  D  +L    +  D+T+R WSL +Q
Sbjct:   79 QEDITAFELSPDDQVLVTATRALLLAQW-------AWREGSITR----LWKAI------HTAPVATMAFDPTSTLLATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVTFHPDPARLLLFSSAADATIRMWSLQDQ 198          
BLAST of mRNA_M-pyrifera_M_contig103066.649.1 vs. uniprot
Match: A0A5J5MR68_MUNRE (Utp13 domain-containing protein (Fragment) n=8 Tax=Pecora TaxID=35500 RepID=A0A5J5MR68_MUNRE)

HSP 1 Score: 77.8 bits (190), Expect = 6.790e-14
Identity = 57/145 (39.31%), Postives = 77/145 (53.10%), Query Frame = 1
Query:    1 QGAEDELVRDRVTALAVSPDGRTLATCSKTLFLRTWDLSGIVAAAQTRTRTRVAVPLLRSIRMAASGHKSAVASIAFHPSGELVATGGTDRAVMVWDVTAGFATHRFRGHSGVVHRVWWTGD-FQLASAGATGDSTLRFWSLTEQ 432
            Q  E E   D +TA  +SPD + L T S+ L L  W       A Q  + TR    L ++I      H + VA++AF P+  L+ATGG D AV VWDV   + TH FRG  GVVH V +  D  +L    +  D+++R WSL E+
Sbjct:   45 QSLEQEDQED-ITAFDLSPDDKVLVTASRALLLAQW-------AWQEGSVTR----LWKAI------HTAPVATMAFDPTSTLLATGGCDGAVRVWDVVRYYGTHHFRGSPGVVHLVAFHPDPARLLLFSSAADTSVRVWSLQER 171          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103066.649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4BKG9_PYTIN2.990e-1738.10U3 small nucleolar RNA-associated protein, putativ... [more]
A0A7S1CCR9_9STRA1.740e-1535.97Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A4D9D3B5_9STRA3.210e-1539.60Utp13 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A0P1AAK2_PLAHL5.810e-1535.14Transducin-like 3 n=1 Tax=Plasmopara halstedii Tax... [more]
K3WQG2_GLOUD7.510e-1535.86Utp13 domain-containing protein n=1 Tax=Globispora... [more]
A0A484E7L4_BRELC1.080e-1435.81Utp13 domain-containing protein n=1 Tax=Bremia lac... [more]
M3WFN9_FELCA3.670e-1439.42Transducin beta like 3 n=55 Tax=Laurasiatheria Tax... [more]
A0A7S2DDZ1_9STRA5.860e-1437.61Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A8C0PP79_CANLF6.770e-1437.23TNF receptor associated factor 7 n=2 Tax=Canis lup... [more]
A0A5J5MR68_MUNRE6.790e-1439.31Utp13 domain-containing protein (Fragment) n=8 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103066contigM-pyrifera_M_contig103066:31..468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue7.2e-13
Seed eggNOG ortholog65071.PYU1_T007204
Preferred nameTBL3
KEGG koko:K14555
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U3 small nucleolar RNA-associated protein. Source PGD
EggNOG OGs1MCEW@121069,KOG0319@1,KOG0319@2759
COG Functional cat.A
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.398013-CDS-M-pyrifera_M_contig103066:30..4681622815535.398013-CDS-M-pyrifera_M_contig103066:30..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103066 31..468 +
1692277453.4222364-CDS-M-pyrifera_M_contig103066:30..4681692277453.4222364-CDS-M-pyrifera_M_contig103066:30..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103066 31..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103066.649.1prot_M-pyrifera_M_contig103066.649.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103066 31..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103066.649.1

>prot_M-pyrifera_M_contig103066.649.1 ID=prot_M-pyrifera_M_contig103066.649.1|Name=mRNA_M-pyrifera_M_contig103066.649.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
QGAEDELVRDRVTALAVSPDGRTLATCSKTLFLRTWDLSGIVAAAQTRTR
TRVAVPLLRSIRMAASGHKSAVASIAFHPSGELVATGGTDRAVMVWDVTA
GFATHRFRGHSGVVHRVWWTGDFQLASAGATGDSTLRFWSLTEQAQ
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mRNA from alignment at M-pyrifera_M_contig103066:31..468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103066.649.1 ID=mRNA_M-pyrifera_M_contig103066.649.1|Name=mRNA_M-pyrifera_M_contig103066.649.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig103066:31..468+ (Macrocystis pyrifera P11B4 male)
CAGGGCGCGGAGGACGAGCTGGTGCGAGACCGTGTGACGGCGCTGGCGGT GTCGCCCGATGGCCGGACGCTGGCTACGTGCTCCAAGACGCTCTTCCTGC GCACGTGGGACCTTTCTGGGATCGTGGCTGCAGCTCAAACTCGAACCCGG ACCAGAGTGGCCGTCCCGCTGCTCCGCTCTATTCGCATGGCAGCCAGCGG GCACAAGAGCGCAGTGGCAAGCATCGCGTTTCACCCCTCAGGAGAGCTCG TCGCAACTGGAGGCACCGACCGAGCTGTCATGGTCTGGGACGTCACCGCT GGGTTCGCAACACACCGCTTCCGCGGACACTCAGGCGTCGTGCACAGAGT GTGGTGGACTGGAGATTTTCAACTGGCCAGTGCAGGAGCTACTGGTGATT CAACGCTACGATTCTGGTCACTCACAGAACAAGCACAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103066:31..468+

>mRNA_M-pyrifera_M_contig103066.649.1 ID=mRNA_M-pyrifera_M_contig103066.649.1|Name=mRNA_M-pyrifera_M_contig103066.649.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig103066:31..468+ (Macrocystis pyrifera P11B4 male)
CAGGGCGCGGAGGACGAGCTGGTGCGAGACCGTGTGACGGCGCTGGCGGT
GTCGCCCGATGGCCGGACGCTGGCTACGTGCTCCAAGACGCTCTTCCTGC
GCACGTGGGACCTTTCTGGGATCGTGGCTGCAGCTCAAACTCGAACCCGG
ACCAGAGTGGCCGTCCCGCTGCTCCGCTCTATTCGCATGGCAGCCAGCGG
GCACAAGAGCGCAGTGGCAAGCATCGCGTTTCACCCCTCAGGAGAGCTCG
TCGCAACTGGAGGCACCGACCGAGCTGTCATGGTCTGGGACGTCACCGCT
GGGTTCGCAACACACCGCTTCCGCGGACACTCAGGCGTCGTGCACAGAGT
GTGGTGGACTGGAGATTTTCAACTGGCCAGTGCAGGAGCTACTGGTGATT
CAACGCTACGATTCTGGTCACTCACAGAACAAGCACAACAGGGCGCGGAG
GACGAGCTGGTGCGAGACCGTGTGACGGCGCTGGCGGTGTCGCCCGATGG
CCGGACGCTGGCTACGTGCTCCAAGACGCTCTTCCTGCGCACGTGGGACC
TTTCTGGGATCGTGGCTGCAGCTCAAACTCGAACCCGGACCAGAGTGGCC
GTCCCGCTGCTCCGCTCTATTCGCATGGCAGCCAGCGGGCACAAGAGCGC
AGTGGCAAGCATCGCGTTTCACCCCTCAGGAGAGCTCGTCGCAACTGGAG
GCACCGACCGAGCTGTCATGGTCTGGGACGTCACCGCTGGGTTCGCAACA
CACCGCTTCCGCGGACACTCAGGCGTCGTGCACAGAGTGTGGTGGACTGG
AGATTTTCAACTGGCCAGTGCAGGAGCTACTGGTGATTCAACGCTACGAT
TCTGGTCACTCACAGAACAAGCACAA
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