mRNA_M-pyrifera_M_contig10303.635.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10303.635.1
Unique NamemRNA_M-pyrifera_M_contig10303.635.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10303.635.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.940e-48
Identity = 83/148 (56.08%), Postives = 102/148 (68.92%), Query Frame = 1
Query:    1 MELNSAFTREHLFLMCLDDASVPIFAS-LGIRCVPLGDLKLHSHRDLWKTRVRVVSCLLAEGYDVIMSDSDALWLGDPMEYLHLSS---SSVIASRGSFPAELGIEWGATMCMGFIMFRATG--AAMDIFQDTMERVVLKTGDDQIAI 426
            MEL ++FTR HL+LMCLDD S+  F S +GI C+PL  L + SH  +W  RVRVVSCL   G+DVIMSD+DALWL DPM+   L     SS++ASRG  P E+G  WGATMCMGFI+FRAT    AM  F   M  +V ++ DDQIA+
Sbjct:    1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGLNISSHEQIWVLRVRVVSCLAEAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148          
BLAST of mRNA_M-pyrifera_M_contig10303.635.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.460e-47
Identity = 82/147 (55.78%), Postives = 105/147 (71.43%), Query Frame = 1
Query:    1 MELNSAFTREHLFLMCLDDASVPIF-ASLGIRCVPLGDLKLHSHRDLWKTRVRVVSCLLAEGYDVIMSDSDALWLGDPMEYLHLS---SSSVIASRGSFPAELGIEWGATMCMGFIMFRATGA-AMDIFQDTMERVVLKTGDDQIAI 426
            MELNSA TR+HL+LMC+D+ SV  F +S+ IRC+PL      SH ++W  R RVVSCL+  G DVIMSD+DALWL DP +  +L     SSV+ASRG FP  LG+EWGATMCMGF++FRATG   +  F + M+ +V K  DDQI++
Sbjct:   79 MELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISV 225          
BLAST of mRNA_M-pyrifera_M_contig10303.635.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.760e-40
Identity = 78/147 (53.06%), Postives = 101/147 (68.71%), Query Frame = 1
Query:    1 MELNSAFTREHLFLMCLDDASVPIF-ASLGIRCVPLGDLKLHSHRDLWKTRVRVVSCLLAEGY-DVIMSDSDALWLGDPMEYLHLSSSS----VIASRGSFPAELGIEWGATMCMGFIMFRATGAA-MDIFQDTMERVVLKTGDDQI 420
            ME NS FTR +++LMC+D AS   F A +GIRCVP+  L L +H+D+W+ RV+VVSCLL  G+ DVIMSD+DALWL DP + L          +IASRGS+P E   EWG+T+CMGFI+FRA   A M  F D M  +V++  DDQ+
Sbjct:   21 MERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLPTHQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQM 167          
BLAST of mRNA_M-pyrifera_M_contig10303.635.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.750e-39
Identity = 77/149 (51.68%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    1 MELNSAFTREHLFLMCLDDASVPIF-ASLGIRCVPLGDLKLHSHRDLWKTRVRVVSCLLAEG-YDVIMSDSDALWLGDPMEYLHLSSSS----VIASRGSFPAELGIEWGATMCMGFIMFRATGAA-MDIFQDTMERVVLKTGDDQIAI 426
            ME NS FTR +++LMC+DDAS   F   +GIRCVP+  L L +H  +W+ RVRVVSCLL  G  DVIMSD+DALWL DP + L          ++ASRGS+P +   EWG+T+CMGFI+FRA   A M  F D M  +V++  DDQI++
Sbjct:   71 MERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISV 219          
BLAST of mRNA_M-pyrifera_M_contig10303.635.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.330e-36
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = 1
Query:    1 MELNSAFTREHLFLMCLDDASVPIFASLGIRCVPLGDLKLHSHR-DLWKTRVRVVSCLLAEGYDVIMSDSDALWLGDPMEYLHLSS---SSVIASRGSFPAELGIEWGATMCMGFIMFRATGAAMDIFQDTMERVVLKTGDDQIAI 426
            MEL+S F+RE+L+L+CLD+ SV IF  LGIRCV  G L     R D+W  R+ V  CLL  G DV+MSD+DA+WL DP + L   +   S+V+ASR   P  L  +WGAT+CMGF  FRA G+AM  F   +E +  + G+DQIA+
Sbjct:  180 MELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGSAMQAFMTVVEEIANELGNDQIAV 325          
BLAST of mRNA_M-pyrifera_M_contig10303.635.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.760e-35
Identity = 72/146 (49.32%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    1 MELNSAFTREHLFLMCLDDASVPIFASLGIRCVPLGDLKLHSHR-DLWKTRVRVVSCLLAEGYDVIMSDSDALWLGDPMEYLHLS---SSSVIASRGSFPAELGIEWGATMCMGFIMFRATGAAMDIFQDTMERVVLKTGDDQIAI 426
            MEL+S F+RE+L+L+CLD+ SV IF  LGIRCV  G L     R D+W  RV    CLL  G DV+MSD+DA+WL DP           S+V+ASR   P  L  +WGAT+CMGF  FRA G+AM  F   +  +V + GDDQ A+
Sbjct:  105 MELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSAMQAFMTVVGEIVNELGDDQKAV 250          
BLAST of mRNA_M-pyrifera_M_contig10303.635.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 6.250e-32
Identity = 65/146 (44.52%), Postives = 92/146 (63.01%), Query Frame = 1
Query:    1 MELNSAFTREHLFLMCLDDASVPIFASLGIRCVPLGDLKLH-SHRDLWKTRVRVVSCLLAEGYDVIMSDSDALWLGDPMEYLHLSS---SSVIASRGSFPAELGIEWGATMCMGFIMFRATGAAMDIFQDTMERVVLKTGDDQIAI 426
            MEL+S F+RE+++L+CLD+ SV  F +LGIRCV  G +    S   +W  R+ V  CLL  G DV+MSD+DA+WL DPM+         SS++ASRG+ P  L   WGAT+CMGF++FRA   A+  F + +     +  +DQ A+
Sbjct:  163 MELHSTFSRENMYLICLDEESVESFGALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYQFMEVVGEFTEELENDQQAV 308          
BLAST of mRNA_M-pyrifera_M_contig10303.635.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 3.250e-21
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  181 GYDVIMSDSDALWLGDPMEYLHLSS---SSVIASRGSFPAELGIEWGATMCMGFIMFRATGA--AMDIFQDTMERVVLKTGDDQIAI 426
            G+DV+MSD+DALWL DPM+   L     SS++ASRGSFP E+G  WGAT+CMGFI+FR T +  AM  F   M  +VL+  DDQIA+
Sbjct:   67 GHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAV 153          
BLAST of mRNA_M-pyrifera_M_contig10303.635.1 vs. uniprot
Match: A0A7S0SXH7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXH7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.250e-15
Identity = 41/113 (36.28%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   40 LMCLDDASVPIFASLGIRCVPLGDL-------KLHSHRDLWKTRVRVVSCLLA-EGYDVIMSDSDALWLGDPME--YLHLSSSSVIASRGSFPAELGIEWGATMCMGFIMFRA 348
            ++C+DD+S      +G+ CV   +        K     ++W  R+ ++S L+  E  DVI++D D+LW+  P+    +H +SSS+++SR  +P EL   WGAT+CMGFI F+A
Sbjct:    1 IICIDDSSFNQLLDIGLYCVLSNNFVSDKSFNKNDYKHNIWLRRIEILSHLINNENQDVILTDLDSLWINSPLNDISIHSASSSIVSSRAWWPHELWSVWGATLCMGFIYFKA 113          
BLAST of mRNA_M-pyrifera_M_contig10303.635.1 vs. uniprot
Match: A0A8J6CCA2_DIALT (Nucleotid_trans domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCA2_DIALT)

HSP 1 Score: 78.2 bits (191), Expect = 2.310e-14
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 1
Query:    1 MELNSAFTR-----------EHL-----FLMCLDDASVPIFASLGIRC---VPLGDLKLHSHRDLWKTRVRVVSCLLAEGYDVIMSDSDALWLGDPMEYLHLSSSSVIASRGSFPAELGIEWGATMCMGFIMFRATG----AAMDIFQDTM 384
            M LNSA+TR            HL      ++C D A+    A LG RC   V  G     S   ++  R+  V+ L+  G DV+++D DA+WLGDP+  +  + + +I SRG  P    ++WGA++CMGFI FR +     AAM +  + M
Sbjct:   53 MVLNSAYTRVFENFIRAPGAHHLAAWETHIICTDRATAVSLAKLGWRCQDTVKTG----RSAAQVYTRRIPYVAHLVHLGRDVLITDVDAIWLGDPLPDIMATQAGIIGSRGRSPH---LDWGASLCMGFIFFRGSDPLVRAAMPVLTEPM 196          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10303.635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FQM0_ECTSI1.940e-4856.08Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A6H5LI82_9PHAE2.460e-4755.78Nucleotid_trans domain-containing protein n=2 Tax=... [more]
A0A6H5JTX9_9PHAE4.760e-4053.06Nucleotid_trans domain-containing protein n=1 Tax=... [more]
D8LK17_ECTSI1.750e-3951.68Nucleotid_trans domain-containing protein n=1 Tax=... [more]
D7FGV6_ECTSI1.330e-3650.00Acetyltransferase (Isoleucine patch superfamily pr... [more]
A0A6H5KMQ8_9PHAE2.760e-3549.32Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D8LSV3_ECTSI6.250e-3244.52Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7G4E2_ECTSI3.250e-2156.32Nucleotid_trans domain-containing protein n=2 Tax=... [more]
A0A7S0SXH7_9STRA3.250e-1536.28Hypothetical protein (Fragment) n=2 Tax=Chromulina... [more]
A0A8J6CCA2_DIALT2.310e-1435.10Nucleotid_trans domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10303contigM-pyrifera_M_contig10303:5626..6051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue5.7e-39
Seed eggNOG ortholog2880.D8LSV4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nucleotide-diphospho-sugar transferase
EggNOG OGs2C6NG@1,2SGR5@2759
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferase
Ec32 orthologEc-05_000400.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.7053387-CDS-M-pyrifera_M_contig10303:5625..60511622815534.7053387-CDS-M-pyrifera_M_contig10303:5625..6051Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10303 5626..6051 +
1692277453.189956-CDS-M-pyrifera_M_contig10303:5625..60511692277453.189956-CDS-M-pyrifera_M_contig10303:5625..6051Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10303 5626..6051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10303.635.1prot_M-pyrifera_M_contig10303.635.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10303 5626..6051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10303.635.1

>prot_M-pyrifera_M_contig10303.635.1 ID=prot_M-pyrifera_M_contig10303.635.1|Name=mRNA_M-pyrifera_M_contig10303.635.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MELNSAFTREHLFLMCLDDASVPIFASLGIRCVPLGDLKLHSHRDLWKTR
VRVVSCLLAEGYDVIMSDSDALWLGDPMEYLHLSSSSVIASRGSFPAELG
IEWGATMCMGFIMFRATGAAMDIFQDTMERVVLKTGDDQIAI
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mRNA from alignment at M-pyrifera_M_contig10303:5626..6051+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10303.635.1 ID=mRNA_M-pyrifera_M_contig10303.635.1|Name=mRNA_M-pyrifera_M_contig10303.635.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig10303:5626..6051+ (Macrocystis pyrifera P11B4 male)
ATGGAGCTTAACTCGGCCTTCACACGCGAGCACCTATTTCTCATGTGCTT GGACGATGCGTCCGTGCCGATTTTCGCATCTTTGGGGATCCGCTGCGTGC CGCTGGGCGATCTTAAGTTGCACTCCCACAGAGACCTGTGGAAGACGAGG GTCAGAGTCGTGTCATGTTTGCTGGCGGAGGGATACGACGTCATAATGTC CGATTCGGATGCCCTTTGGCTCGGCGACCCCATGGAATACCTACACTTGA GCAGCAGCAGCGTGATCGCTTCGCGTGGTAGTTTTCCTGCTGAACTTGGA ATAGAATGGGGAGCAACCATGTGCATGGGGTTCATCATGTTTCGAGCAAC GGGGGCGGCCATGGACATCTTCCAGGACACCATGGAACGTGTGGTCTTGA AAACCGGCGATGACCAAATCGCGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10303:5626..6051+

>mRNA_M-pyrifera_M_contig10303.635.1 ID=mRNA_M-pyrifera_M_contig10303.635.1|Name=mRNA_M-pyrifera_M_contig10303.635.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig10303:5626..6051+ (Macrocystis pyrifera P11B4 male)
ATGGAGCTTAACTCGGCCTTCACACGCGAGCACCTATTTCTCATGTGCTT
GGACGATGCGTCCGTGCCGATTTTCGCATCTTTGGGGATCCGCTGCGTGC
CGCTGGGCGATCTTAAGTTGCACTCCCACAGAGACCTGTGGAAGACGAGG
GTCAGAGTCGTGTCATGTTTGCTGGCGGAGGGATACGACGTCATAATGTC
CGATTCGGATGCCCTTTGGCTCGGCGACCCCATGGAATACCTACACTTGA
GCAGCAGCAGCGTGATCGCTTCGCGTGGTAGTTTTCCTGCTGAACTTGGA
ATAGAATGGGGAGCAACCATGTGCATGGGGTTCATCATGTTTCGAGCAAC
GGGGGCGGCCATGGACATCTTCCAGGACACCATGGAACGTGTGGTCTTGA
AAACCGGCGATGACCAAATCGCGATCATGGAGCTTAACTCGGCCTTCACA
CGCGAGCACCTATTTCTCATGTGCTTGGACGATGCGTCCGTGCCGATTTT
CGCATCTTTGGGGATCCGCTGCGTGCCGCTGGGCGATCTTAAGTTGCACT
CCCACAGAGACCTGTGGAAGACGAGGGTCAGAGTCGTGTCATGTTTGCTG
GCGGAGGGATACGACGTCATAATGTCCGATTCGGATGCCCTTTGGCTCGG
CGACCCCATGGAATACCTACACTTGAGCAGCAGCAGCGTGATCGCTTCGC
GTGGTAGTTTTCCTGCTGAACTTGGAATAGAATGGGGAGCAACCATGTGC
ATGGGGTTCATCATGTTTCGAGCAACGGGGGCGGCCATGGACATCTTCCA
GGACACCATGGAACGTGTGGTCTTGAAAACCGGCGATGACCAAATCGCGA
TC
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