mRNA_M-pyrifera_M_contig103015.631.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103015.631.1
Unique NamemRNA_M-pyrifera_M_contig103015.631.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103015.631.1 vs. uniprot
Match: D8LBZ9_ECTSI (TLDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ9_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.140e-18
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   58 ATTARYNPKGWVGYGEYRPGLSAFLFTWRDGDTSKRAVKLRKV 186
            A    YNPKGWVGYGEYRPGLSAFLFTWRDGDT+KRA+KLRK+
Sbjct:  187 AVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTNKRAMKLRKI 229
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BLAST of mRNA_M-pyrifera_M_contig103015.631.1 vs. uniprot
Match: A0A835YK91_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK91_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.000e-16
Identity = 35/43 (81.40%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   58 ATTARYNPKGWVGYGEYRPGLSAFLFTWRDGDTSKRAVKLRKV 186
            A    YNPKGWVG  EYRPGLSAFLFTW DGDTSKR VKLRKV
Sbjct:  114 AVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKV 156
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BLAST of mRNA_M-pyrifera_M_contig103015.631.1 vs. uniprot
Match: L1IZU1_GUITC (TLDc domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IZU1_GUITC)

HSP 1 Score: 71.2 bits (173), Expect = 8.760e-14
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   58 ATTARYNPKGWVGYGEYRPGLSAFLFTWRDGDTSKRAVKLRKV 186
            A    YNPKGWVGYGEYR  ++AFLF W DGDTS+ A+KLRKV
Sbjct:   54 AVVGGYNPKGWVGYGEYRGSIAAFLFCWPDGDTSRPAIKLRKV 96
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BLAST of mRNA_M-pyrifera_M_contig103015.631.1 vs. uniprot
Match: A0A7S0DY99_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DY99_9CRYP)

HSP 1 Score: 73.2 bits (178), Expect = 1.210e-13
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   58 ATTARYNPKGWVGYGEYRPGLSAFLFTWRDGDTSKRAVKLRKV 186
            A    YNPKGWVGYGEYR  ++AFLF+W DGDTSK A+KLRKV
Sbjct:  374 AVVGGYNPKGWVGYGEYRGSIAAFLFSWPDGDTSKPAIKLRKV 416
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BLAST of mRNA_M-pyrifera_M_contig103015.631.1 vs. uniprot
Match: A0A6V1NAM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAM7_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 4.950e-13
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   58 ATTARYNPKGWVGYGEYRPGLSAFLFTWRDGDTSK--RAVKLRKV 186
            A    YNPKGWVGYGEYRPGLSAFLFTW DG+T    +A+KLRK+
Sbjct:  171 AVIGGYNPKGWVGYGEYRPGLSAFLFTWPDGNTVDYTKALKLRKI 215
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BLAST of mRNA_M-pyrifera_M_contig103015.631.1 vs. uniprot
Match: A0A5J4YZD4_PORPP (TLDc domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZD4_PORPP)

HSP 1 Score: 70.5 bits (171), Expect = 6.850e-13
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   58 ATTARYNPKGWVGYGEYRPGLSAFLFTWRDGDTSKRAVKLRKV 186
            A    Y+PKGWVGYGE R  ++AFLFTW DGDTSKR++KLRK+
Sbjct:  167 AVVGGYSPKGWVGYGESRGSIAAFLFTWPDGDTSKRSIKLRKI 209
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BLAST of mRNA_M-pyrifera_M_contig103015.631.1 vs. uniprot
Match: A0A7S2ZTI4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZTI4_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 7.640e-12
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   73 YNPKGWVGYGEYRPGLSAFLFTWRDGDTSKRAVKLRKV 186
            YNPKGWVGYGE R  L++FLFTW  GDTSK A+KLRKV
Sbjct:  145 YNPKGWVGYGESRGSLASFLFTWPGGDTSKPAIKLRKV 182
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BLAST of mRNA_M-pyrifera_M_contig103015.631.1 vs. uniprot
Match: A0A7S3EDY6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EDY6_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 9.510e-12
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   73 YNPKGWVGYGEYRPGLSAFLFTWRDGDTSKRAVKLRKV 186
            YNPKGWVGYGE R  L++FLFTW  GDTSK A+KLRKV
Sbjct:  145 YNPKGWVGYGESRGSLASFLFTWPGGDTSKPAIKLRKV 182
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BLAST of mRNA_M-pyrifera_M_contig103015.631.1 vs. uniprot
Match: A0A7S2V5P6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.760e-11
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   73 YNPKGWVGYGEYRPGLSAFLFTWRDGDTSKRAVKLRKV 186
            YNPKGWVG+GE RPG+SAFLFT+  GDT+   +KLRK+
Sbjct:    7 YNPKGWVGFGELRPGISAFLFTYPGGDTTVPPIKLRKI 44
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BLAST of mRNA_M-pyrifera_M_contig103015.631.1 vs. uniprot
Match: A0A2V3IH56_9FLOR (TLDc domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH56_9FLOR)

HSP 1 Score: 65.5 bits (158), Expect = 2.890e-11
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    1 FTHRTSREKSQPPYVPATPATTARYNPKGWVGYGEYRPGLSAFLFTWRDGDTSKRAVKLRKV 186
            F  R +R+ +   +  +  A    YNPKG+VGYGE R   +AFLFTW DGDTSK A+K+RKV
Sbjct:   85 FHERLNRKGASVVFARSQKAVFGGYNPKGFVGYGESRGSKAAFLFTWPDGDTSKPAMKMRKV 146
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103015.631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ9_ECTSI2.140e-1883.72TLDc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YK91_9STRA7.000e-1681.40TLDc domain-containing protein n=1 Tax=Tribonema m... [more]
L1IZU1_GUITC8.760e-1469.77TLDc domain-containing protein n=1 Tax=Guillardia ... [more]
A0A7S0DY99_9CRYP1.210e-1372.09Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A6V1NAM7_HETAK4.950e-1371.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5J4YZD4_PORPP6.850e-1367.44TLDc domain-containing protein n=1 Tax=Porphyridiu... [more]
A0A7S2ZTI4_9RHOD7.640e-1276.32Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S3EDY6_9RHOD9.510e-1276.32Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2V5P6_9STRA1.760e-1168.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2V3IH56_9FLOR2.890e-1151.61TLDc domain-containing protein n=1 Tax=Gracilariop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103015contigM-pyrifera_M_contig103015:166..351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue9.5e-15
Seed eggNOG ortholog2880.D8LBZ9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TLD
EggNOG OGs2BGQI@1,2S19X@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003910.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.502082-CDS-M-pyrifera_M_contig103015:165..3511622815534.502082-CDS-M-pyrifera_M_contig103015:165..351Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103015 166..351 -
1692277453.1389754-CDS-M-pyrifera_M_contig103015:165..3511692277453.1389754-CDS-M-pyrifera_M_contig103015:165..351Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103015 166..351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103015.631.1prot_M-pyrifera_M_contig103015.631.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103015 166..351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103015.631.1

>prot_M-pyrifera_M_contig103015.631.1 ID=prot_M-pyrifera_M_contig103015.631.1|Name=mRNA_M-pyrifera_M_contig103015.631.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
FTHRTSREKSQPPYVPATPATTARYNPKGWVGYGEYRPGLSAFLFTWRDG
DTSKRAVKLRKV
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mRNA from alignment at M-pyrifera_M_contig103015:166..351-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103015.631.1 ID=mRNA_M-pyrifera_M_contig103015.631.1|Name=mRNA_M-pyrifera_M_contig103015.631.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig103015:166..351- (Macrocystis pyrifera P11B4 male)
TTCACTCACCGCACGAGCCGCGAAAAAAGCCAGCCGCCCTATGTACCCGC
CACACCCGCAACAACCGCAAGGTACAACCCCAAGGGTTGGGTGGGGTACG
GGGAGTACCGGCCGGGGCTGTCGGCGTTCTTGTTCACCTGGAGGGACGGG
GATACCTCCAAGAGAGCAGTCAAGCTGAGGAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103015:166..351-

>mRNA_M-pyrifera_M_contig103015.631.1 ID=mRNA_M-pyrifera_M_contig103015.631.1|Name=mRNA_M-pyrifera_M_contig103015.631.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig103015:166..351- (Macrocystis pyrifera P11B4 male)
TTCACTCACCGCACGAGCCGCGAAAAAAGCCAGCCGCCCTATGTACCCGC
CACACCCGCAACAACCGCAAGGTACAACCCCAAGGGTTGGGTGGGGTACG
GGGAGTACCGGCCGGGGCTGTCGGCGTTCTTGTTCACCTGGAGGGACGGG
GATACCTCCAAGAGAGCAGTCAAGCTGAGGAAGGTGTTCACTCACCGCAC
GAGCCGCGAAAAAAGCCAGCCGCCCTATGTACCCGCCACACCCGCAACAA
CCGCAAGGTACAACCCCAAGGGTTGGGTGGGGTACGGGGAGTACCGGCCG
GGGCTGTCGGCGTTCTTGTTCACCTGGAGGGACGGGGATACCTCCAAGAG
AGCAGTCAAGCTGAGGAAGGTG
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