mRNA_M-pyrifera_M_contig102931.622.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102931.622.1
Unique NamemRNA_M-pyrifera_M_contig102931.622.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102931.622.1 vs. uniprot
Match: B3RLI3_TRIAD (Rap-GAP domain-containing protein (Fragment) n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RLI3_TRIAD)

HSP 1 Score: 120 bits (300), Expect = 1.610e-31
Identity = 56/111 (50.45%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   10 STPAFERFVHRLGDKVSLEGFQGHRGGLDVNSNSTGTESVYLSYHGRELMFHVSTMLPYSDSDSQQLARKRHIGNDIVVLLFKDS-TEPIDP-ILRSQYNRTNSFVCWRRV 336
            S+P FERF+  LGD+++L+GFQG++G LD+ +N+TGTES+Y  Y+G ++M+HVST+LPY+    QQL RKRHIGNDIV  +F+++   P  P I+RS +     F+  R V
Sbjct:   24 SSPRFERFLSILGDRITLQGFQGYKGQLDIKNNTTGTESIYTKYYGNQIMYHVSTLLPYNQDCGQQLMRKRHIGNDIVTFIFQENDAPPFSPRIIRSNFQHV--FIVVRPV 132          
BLAST of mRNA_M-pyrifera_M_contig102931.622.1 vs. uniprot
Match: UPI000CCBE40C (GTPase-activating Rap/Ran-GAP domain-like protein 3 n=1 Tax=Myotis lucifugus TaxID=59463 RepID=UPI000CCBE40C)

HSP 1 Score: 117 bits (292), Expect = 2.330e-31
Identity = 53/109 (48.62%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    7 VSTPAFERFVHRLGDKVSLEGFQGHRGGLDVNSNSTGTESVYLSYHGRELMFHVSTMLPYSDSDSQQLARKRHIGNDIVVLLFKDSTEPIDP----ILRSQYNRTNSFV 321
            + + AF++F+H LGD ++L+G+ G+RGGLD  +++TG  SVY  Y G E+MFHVSTMLPYS  + QQ+ RKRHIGNDIV ++F++  EP       ++RS + R    V
Sbjct:   27 IGSDAFQKFLHLLGDTITLKGWTGYRGGLDTKNDTTGIHSVYTLYQGHEIMFHVSTMLPYSKENKQQVERKRHIGNDIVTIVFQEGEEPCPAFKPSMIRSHFTRILGLV 135          
BLAST of mRNA_M-pyrifera_M_contig102931.622.1 vs. uniprot
Match: A0A2P6MX48_9EUKA (Rap-GAP domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MX48_9EUKA)

HSP 1 Score: 124 bits (312), Expect = 6.420e-31
Identity = 58/108 (53.70%), Postives = 78/108 (72.22%), Query Frame = 1
Query:    1 RAVSTPAFERFVHRLGDKVSLEGFQGHRGGLDVNSNSTGTESVYLSYHGRELMFHVSTMLPYSDSDSQQLARKRHIGNDIVVLLFKDSTEPIDP-ILRSQYNRTNSFV 321
            R  ++P FE F+  LGD+V L+G  G  GGLDV  N+TGT SVY  +H  E+MFHVST+LP+  +D QQ+ +KRHIGNDIVV++F ++ EP DP I+RS+YN    F+
Sbjct:  449 RENASPDFEEFLQFLGDRVELQGHAGFAGGLDVKKNTTGTASVYTVFHDLEVMFHVSTLLPHFPADPQQVEKKRHIGNDIVVIIFNEADEPFDPSIMRSEYNNVYVFI 556          
BLAST of mRNA_M-pyrifera_M_contig102931.622.1 vs. uniprot
Match: A0A7J7JJS8_BUGNE (Rapgap1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JJS8_BUGNE)

HSP 1 Score: 123 bits (309), Expect = 2.070e-30
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 1
Query:    7 VSTPAFERFVHRLGDKVSLEGFQGHRGGLDVNSNSTGTESVYLSYHGRELMFHVSTMLPYSDSDSQQLARKRHIGNDIVVLLFKDSTEPIDP 282
            V+TPAF  F+ ++G+K+ L+GF G RGGLD     TG ES++ ++ GRE+MFHVSTMLPY+D+DSQQL RKRHIGNDIV ++F++ + P  P
Sbjct:  388 VTTPAFSEFLEQIGEKIPLKGFDGFRGGLDTLKGQTGAESIHTNFEGREIMFHVSTMLPYTDNDSQQLQRKRHIGNDIVAIVFQEESTPFIP 479          
BLAST of mRNA_M-pyrifera_M_contig102931.622.1 vs. uniprot
Match: L8GN14_ACACA (Rap/ranGAP n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GN14_ACACA)

HSP 1 Score: 121 bits (304), Expect = 2.280e-30
Identity = 56/99 (56.57%), Postives = 78/99 (78.79%), Query Frame = 1
Query:   13 TPAFERFVHRLGDKVSLEGFQGHRGGLDVNSNSTGTESVYLSYHGRELMFHVSTMLPYSDSDSQQLARKRHIGNDIVVLLFKDS-TEPIDPI-LRSQYN 303
            +PAFE F+  LGD++ LEGFQG+RGGLDV +N+TGT SV+  + G E+MFHVST+L Y  SD+QQ+ RKRH+GND+V+++F++   EP  P  +RSQ+N
Sbjct:  281 SPAFEEFLDFLGDRIKLEGFQGYRGGLDVKANTTGTHSVHTQHKGSEIMFHVSTLLQYYPSDAQQVERKRHLGNDVVMIIFREGENEPFSPKWVRSQFN 379          
BLAST of mRNA_M-pyrifera_M_contig102931.622.1 vs. uniprot
Match: A0A8M2BLS0_DANRE (rap1 GTPase-activating protein 1-like n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M2BLS0_DANRE)

HSP 1 Score: 118 bits (296), Expect = 2.480e-30
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1
Query:   13 TPAFERFVHRLGDKVSLEGFQGHRGGLDVNSNSTGTESVYLSYHGRELMFHVSTMLPYSDSDSQQLARKRHIGNDIVVLLFKDSTEPIDP 282
            +PAF  F+  LG+K+ L  F+G RGGLDV    TGTESVY+++H +E+MFHVST LPY++ DSQQL RKRHIGNDIV ++F++   P  P
Sbjct:   59 SPAFVEFLEFLGEKIDLHDFKGFRGGLDVTHGQTGTESVYVNFHNKEIMFHVSTKLPYTEGDSQQLQRKRHIGNDIVAIVFQEENTPFVP 148          
BLAST of mRNA_M-pyrifera_M_contig102931.622.1 vs. uniprot
Match: A0A0S7GS61_9TELE (RPGP1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7GS61_9TELE)

HSP 1 Score: 114 bits (285), Expect = 3.580e-30
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   13 TPAFERFVHRLGDKVSLEGFQGHRGGLDVNSNSTGTESVYLSYHGRELMFHVSTMLPYSDSDSQQLARKRHIGNDIVVLLFKDSTEPIDPILRSQYNRTNSFV 321
            +PAF  F+  LG K+ L  F+G RGGLDV    TG ESVY ++H +E+MFHVST LPY++ DSQQL RKRHIGNDIV ++F++   P  P +  Q N  +++V
Sbjct:   21 SPAFIEFLEFLGTKIELHDFKGFRGGLDVTHGQTGMESVYTNFHNKEIMFHVSTKLPYTEGDSQQLQRKRHIGNDIVAIVFQEENTPFVPDM-IQSNFLHAYV 122          
BLAST of mRNA_M-pyrifera_M_contig102931.622.1 vs. uniprot
Match: A0A7K4LYI1_9AVES (RPGP1 protein (Fragment) n=1 Tax=Crypturellus undulatus TaxID=48396 RepID=A0A7K4LYI1_9AVES)

HSP 1 Score: 115 bits (287), Expect = 3.770e-30
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   13 TPAFERFVHRLGDKVSLEGFQGHRGGLDVNSNSTGTESVYLSYHGRELMFHVSTMLPYSDSDSQQLARKRHIGNDIVVLLFKDSTEPIDP 282
            +PAF  F+  LG KV L+ F+G RGGLDV    TG+ESVY  + G+E+MFHVST LPY++ D+QQL RKRHIGNDIV ++F+D   P  P
Sbjct:   60 SPAFVEFLDFLGQKVKLQDFKGFRGGLDVTHGQTGSESVYCHFRGKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAIVFQDENTPFVP 149          
BLAST of mRNA_M-pyrifera_M_contig102931.622.1 vs. uniprot
Match: A0A674EYJ2_SALTR (Rap1 GTPase-activating protein 1-like n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674EYJ2_SALTR)

HSP 1 Score: 120 bits (301), Expect = 3.990e-30
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   13 TPAFERFVHRLGDKVSLEGFQGHRGGLDVNSNSTGTESVYLSYHGRELMFHVSTMLPYSDSDSQQLARKRHIGNDIVVLLFKDSTEPIDP 282
            +PAF  F+  LGDK+ L  F+G RGGLDV    TGTESVY ++H +E+MFHVST LPY++ DSQQL RKRHIGNDIV +LF++   P  P
Sbjct:  170 SPAFVEFLEFLGDKIELHDFKGFRGGLDVTHGQTGTESVYTNFHNKEIMFHVSTKLPYTEGDSQQLQRKRHIGNDIVAILFQEENTPFVP 259          
BLAST of mRNA_M-pyrifera_M_contig102931.622.1 vs. uniprot
Match: A0A7L3ZES5_FREGA (RPGP1 protein (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L3ZES5_FREGA)

HSP 1 Score: 114 bits (286), Expect = 6.120e-30
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   22 FERFVHRLGDKVSLEGFQGHRGGLDVNSNSTGTESVYLSYHGRELMFHVSTMLPYSDSDSQQLARKRHIGNDIVVLLFKDSTEPIDP 282
            F  F+  LGDK+ L+ F+G RGGLDV    TGTESVY ++ G+E+MFHVST LP+++ DSQQL RKRHIGNDIV ++F+D + P  P
Sbjct:   63 FLEFLDFLGDKIQLQDFRGFRGGLDVTRGQTGTESVYTNFRGKEIMFHVSTKLPFTEGDSQQLQRKRHIGNDIVAIIFQDESTPFVP 149          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102931.622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3RLI3_TRIAD1.610e-3150.45Rap-GAP domain-containing protein (Fragment) n=1 T... [more]
UPI000CCBE40C2.330e-3148.62GTPase-activating Rap/Ran-GAP domain-like protein ... [more]
A0A2P6MX48_9EUKA6.420e-3153.70Rap-GAP domain-containing protein n=1 Tax=Planopro... [more]
A0A7J7JJS8_BUGNE2.070e-3057.61Rapgap1 n=1 Tax=Bugula neritina TaxID=10212 RepID=... [more]
L8GN14_ACACA2.280e-3056.57Rap/ranGAP n=1 Tax=Acanthamoeba castellanii str. N... [more]
A0A8M2BLS0_DANRE2.480e-3057.78rap1 GTPase-activating protein 1-like n=1 Tax=Dani... [more]
A0A0S7GS61_9TELE3.580e-3052.43RPGP1 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A7K4LYI1_9AVES3.770e-3057.78RPGP1 protein (Fragment) n=1 Tax=Crypturellus undu... [more]
A0A674EYJ2_SALTR3.990e-3060.00Rap1 GTPase-activating protein 1-like n=1 Tax=Salm... [more]
A0A7L3ZES5_FREGA6.120e-3058.62RPGP1 protein (Fragment) n=4 Tax=Neognathae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102931contigM-pyrifera_M_contig102931:45..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score122.1
Seed ortholog evalue1.7e-25
Seed eggNOG ortholog7668.SPU_005447-tr
Preferred nameRAP1GAP
KEGG koko:K17700,ko:K17708
KEGG Pathwayko04015,map04015
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0003924,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006928,GO:0006935,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008047,GO:0008150,GO:0008285,GO:0008361,GO:0009605,GO:0009653,GO:0009719,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017016,GO:0017111,GO:0019899,GO:0022008,GO:0022407,GO:0022409,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030100,GO:0030154,GO:0030155,GO:0030182,GO:0030234,GO:0030424,GO:0030425,GO:0030695,GO:0031090,GO:0031175,GO:0031267,GO:0031344,GO:0031345,GO:0031410,GO:0031965,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032530,GO:0032534,GO:0032535,GO:0032879,GO:0032989,GO:0032990,GO:0036477,GO:0040011,GO:0042127,GO:0042221,GO:0042330,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043025,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043547,GO:0044087,GO:0044092,GO:0044093,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045495,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045785,GO:0045807,GO:0046983,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050678,GO:0050680,GO:0050764,GO:0050766,GO:0050767,GO:0050768,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051056,GO:0051058,GO:0051093,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051130,GO:0051239,GO:0051241,GO:0051336,GO:0051345,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060293,GO:0060491,GO:0060589,GO:0060627,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071840,GO:0071944,GO:0090066,GO:0097447,GO:0097458,GO:0097485,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0120025,GO:0120032,GO:0120033,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:1902531,GO:1902532,GO:1903697,GO:1904424,GO:1904425,GO:1904441,GO:1904442,GO:1990790,GO:1990792,GO:2000026
EggNOG free text desc.RAP1 GTPase activating protein
EggNOG OGs38CR4@33154,3BBWA@33208,3CSVZ@33213,KOG3686@1,KOG3686@2759
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.9581065-CDS-M-pyrifera_M_contig102931:44..1471622815533.9581065-CDS-M-pyrifera_M_contig102931:44..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102931 45..147 +
1692277452.8861709-CDS-M-pyrifera_M_contig102931:44..1471692277452.8861709-CDS-M-pyrifera_M_contig102931:44..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102931 45..147 +
1622815533.9691076-CDS-M-pyrifera_M_contig102931:248..4901622815533.9691076-CDS-M-pyrifera_M_contig102931:248..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102931 249..490 +
1692277452.8978224-CDS-M-pyrifera_M_contig102931:248..4901692277452.8978224-CDS-M-pyrifera_M_contig102931:248..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102931 249..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102931.622.1prot_M-pyrifera_M_contig102931.622.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102931 45..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102931.622.1

>prot_M-pyrifera_M_contig102931.622.1 ID=prot_M-pyrifera_M_contig102931.622.1|Name=mRNA_M-pyrifera_M_contig102931.622.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
RAVSTPAFERFVHRLGDKVSLEGFQGHRGGLDVNSNSTGTESVYLSYHGR
ELMFHVSTMLPYSDSDSQQLARKRHIGNDIVVLLFKDSTEPIDPILRSQY
NRTNSFVCWRRVRAD
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mRNA from alignment at M-pyrifera_M_contig102931:45..490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102931.622.1 ID=mRNA_M-pyrifera_M_contig102931.622.1|Name=mRNA_M-pyrifera_M_contig102931.622.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=446bp|location=Sequence derived from alignment at M-pyrifera_M_contig102931:45..490+ (Macrocystis pyrifera P11B4 male)
CGTGCAGTGTCAACTCCAGCGTTCGAGAGGTTTGTGCACCGCTTGGGCGA CAAAGTTTCTCTGGAAGGGTTCCAGGGCCACCGAGGTGGCTTGGACGTCA ACTGTGAGCAGCCCCCACTCTCCTGGCAGCCAGGGCAAGCCCCGCCCTGG TAGCCAGGGCAAGCCCCGCTTCGCTACAAAATCAAGGATCTGACTTGCGT GCAGCAAACAGTACGGGAACAGAGTCCGTGTACTTGTCATACCACGGCCG CGAACTCATGTTCCATGTCAGTACGATGCTGCCATACAGTGATTCCGACT CACAGCAGCTTGCACGCAAGCGGCACATTGGTAATGACATCGTTGTCTTG CTGTTCAAGGACTCGACCGAGCCGATAGACCCCATCCTGCGCTCCCAGTA CAACCGTACGAACTCATTTGTGTGCTGGCGCCGAGTGCGAGCTGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102931:45..490+

>mRNA_M-pyrifera_M_contig102931.622.1 ID=mRNA_M-pyrifera_M_contig102931.622.1|Name=mRNA_M-pyrifera_M_contig102931.622.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig102931:45..490+ (Macrocystis pyrifera P11B4 male)
CGTGCAGTGTCAACTCCAGCGTTCGAGAGGTTTGTGCACCGCTTGGGCGA
CAAAGTTTCTCTGGAAGGGTTCCAGGGCCACCGAGGTGGCTTGGACGTCA
ACTCGTGCAGTGTCAACTCCAGCGTTCGAGAGGTTTGTGCACCGCTTGGG
CGACAAAGTTTCTCTGGAAGGGTTCCAGGGCCACCGAGGTGGCTTGGACG
TCAACTCAAACAGTACGGGAACAGAGTCCGTGTACTTGTCATACCACGGC
CGCGAACTCATGTTCCATGTCAGTACGATGCTGCCATACAGTGATTCCGA
CTCACAGCAGCTTGCACGCAAGCGGCACATTGGTAATGACATCGTTGTCT
TGCTGTTCAAGGACTCGACCGAGCCGATAGACCCCATCCTGCGCTCCCAG
TACAACCGTACGAACTCATTTGTGTGCTGGCGCCGAGTGCGAGCTGACCA
AACAGTACGGGAACAGAGTCCGTGTACTTGTCATACCACGGCCGCGAACT
CATGTTCCATGTCAGTACGATGCTGCCATACAGTGATTCCGACTCACAGC
AGCTTGCACGCAAGCGGCACATTGGTAATGACATCGTTGTCTTGCTGTTC
AAGGACTCGACCGAGCCGATAGACCCCATCCTGCGCTCCCAGTACAACCG
TACGAACTCATTTGTGTGCTGGCGCCGAGTGCGAGCTGAC
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