mRNA_M-pyrifera_M_contig102918.617.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102918.617.1
Unique NamemRNA_M-pyrifera_M_contig102918.617.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102918.617.1 vs. uniprot
Match: A0A7I5E928_HAECO (Ubiquitin-fold modifier 1 n=2 Tax=Ecdysozoa TaxID=1206794 RepID=A0A7I5E928_HAECO)

HSP 1 Score: 86.3 bits (212), Expect = 1.240e-20
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   13 SSGPKVTFKITLTSDPKLPYRVYVISVPEAAPFVAVLKYAAEEFKVPAATSAIITN 180
            SSG KVTFKITLTSDPKLP++V  +SVPEA PF AVLK+AAEEFKVPAATSAIITN
Sbjct:    9 SSGSKVTFKITLTSDPKLPFKV--LSVPEATPFTAVLKFAAEEFKVPAATSAIITN 62
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BLAST of mRNA_M-pyrifera_M_contig102918.617.1 vs. uniprot
Match: A0A0N4XXI4_NIPBR (Ubiquitin-fold modifier 1 n=5 Tax=Strongylida TaxID=6308 RepID=A0A0N4XXI4_NIPBR)

HSP 1 Score: 85.1 bits (209), Expect = 3.110e-20
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   13 SSGPKVTFKITLTSDPKLPYRVYVISVPEAAPFVAVLKYAAEEFKVPAATSAIITN 180
            SSG KVTFKITLTSDPKLP++V  +SVPE+ PF AVLK+AAEEFKVPAATSAIITN
Sbjct:    9 SSGSKVTFKITLTSDPKLPFKV--LSVPESTPFTAVLKFAAEEFKVPAATSAIITN 62
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BLAST of mRNA_M-pyrifera_M_contig102918.617.1 vs. uniprot
Match: A0A5B8MXX3_9CHLO (Ubiquitin-fold modifier 1 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MXX3_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 8.890e-20
Identity = 49/59 (83.05%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:   10 RSSGP--KVTFKITLTSDPKLPYRVYVISVPEAAPFVAVLKYAAEEFKVPAATSAIITN 180
            RS+ P  KVTFKITLTSDPKLPYRV  +SVPE APF AVLKYAAEEFKVPA TSAIITN
Sbjct:    7 RSAKPWSKVTFKITLTSDPKLPYRV--LSVPEEAPFTAVLKYAAEEFKVPAQTSAIITN 63
[Close]
BLAST of mRNA_M-pyrifera_M_contig102918.617.1 vs. uniprot
Match: A0A183GJH7_HELPZ (Mitochondrial import receptor subunit TOM7 homolog n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183GJH7_HELPZ)

HSP 1 Score: 85.1 bits (209), Expect = 1.380e-19
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   13 SSGPKVTFKITLTSDPKLPYRVYVISVPEAAPFVAVLKYAAEEFKVPAATSAIITN 180
            SSG KVTFKITLTSDPKLP++V  +SVPE+ PF AVLK+AAEEFKVPAATSAIITN
Sbjct:    9 SSGSKVTFKITLTSDPKLPFKV--LSVPESTPFTAVLKFAAEEFKVPAATSAIITN 62
[Close]
BLAST of mRNA_M-pyrifera_M_contig102918.617.1 vs. uniprot
Match: A0A0N5AZW3_9BILA (Ubiquitin-fold modifier 1 n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AZW3_9BILA)

HSP 1 Score: 83.2 bits (204), Expect = 1.610e-19
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:   13 SSGPKVTFKITLTSDPKLPYRVYVISVPEAAPFVAVLKYAAEEFKVPAATSAIITN 180
            + G KVTFKITLTSDPKLP++V  +SVPEA PF AVLK+AAEEFKVPAATSAIITN
Sbjct:    3 AQGGKVTFKITLTSDPKLPFKV--LSVPEATPFTAVLKFAAEEFKVPAATSAIITN 56
[Close]
BLAST of mRNA_M-pyrifera_M_contig102918.617.1 vs. uniprot
Match: A9TIT4_PHYPA (Ubiquitin-fold modifier 1 n=3 Tax=Embryophyta TaxID=3193 RepID=A9TIT4_PHYPA)

HSP 1 Score: 83.2 bits (204), Expect = 1.740e-19
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    7 DRSSGPKVTFKITLTSDPKLPYRVYVISVPEAAPFVAVLKYAAEEFKVPAATSAIITN 180
            ++ SG KV+FK+TLTSDPKLPY+V+  SVPE APFVAVLK+AAEEFKVP  TSAIITN
Sbjct:    4 EKESGGKVSFKVTLTSDPKLPYKVF--SVPEEAPFVAVLKFAAEEFKVPPQTSAIITN 59
[Close]
BLAST of mRNA_M-pyrifera_M_contig102918.617.1 vs. uniprot
Match: A0A2V0PP16_9CHLO (Ubiquitin-fold modifier 1 n=2 Tax=Chlorophyta TaxID=3041 RepID=A0A2V0PP16_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 1.940e-19
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   25 KVTFKITLTSDPKLPYRVYVISVPEAAPFVAVLKYAAEEFKVPAATSAIITN 180
            KVTFKITLTSDPKLPYRV+  SVPE APF AVLKYAAEEFKVPA TSAIITN
Sbjct:   15 KVTFKITLTSDPKLPYRVF--SVPEEAPFTAVLKYAAEEFKVPAQTSAIITN 64
[Close]
BLAST of mRNA_M-pyrifera_M_contig102918.617.1 vs. uniprot
Match: UFM1_CAEEL (Ubiquitin-fold modifier 1 n=3 Tax=Caenorhabditis TaxID=6237 RepID=UFM1_CAEEL)

HSP 1 Score: 82.8 bits (203), Expect = 2.410e-19
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   13 SSGPKVTFKITLTSDPKLPYRVYVISVPEAAPFVAVLKYAAEEFKVPAATSAIITN 180
            ++G KVTFKITLTSDPKLP++V  +SVPE+ PF AVLK+AAEEFKVPAATSAIITN
Sbjct:    9 TAGSKVTFKITLTSDPKLPFKV--LSVPESTPFTAVLKFAAEEFKVPAATSAIITN 62
[Close]
BLAST of mRNA_M-pyrifera_M_contig102918.617.1 vs. uniprot
Match: W2TCE6_NECAM (Mitochondrial import receptor subunit TOM7 homolog n=1 Tax=Necator americanus TaxID=51031 RepID=W2TCE6_NECAM)

HSP 1 Score: 85.1 bits (209), Expect = 3.400e-19
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   13 SSGPKVTFKITLTSDPKLPYRVYVISVPEAAPFVAVLKYAAEEFKVPAATSAIITN 180
            SSG KVTFKITLTSDPKLP++V  +SVPE+ PF AVLK+AAEEFKVPAATSAIITN
Sbjct:    9 SSGSKVTFKITLTSDPKLPFKV--LSVPESTPFTAVLKFAAEEFKVPAATSAIITN 62
[Close]
BLAST of mRNA_M-pyrifera_M_contig102918.617.1 vs. uniprot
Match: A0A7I4E6A6_PHYPA (Ubiquitin-fold modifier 1 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4E6A6_PHYPA)

HSP 1 Score: 83.2 bits (204), Expect = 4.300e-19
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:   10 RSSGPKVTFKITLTSDPKLPYRVYVISVPEAAPFVAVLKYAAEEFKVPAATSAIITN 180
            R SG KV+FK+TLTSDPKLPY+V+  SVPE APFVAVLK+AAEEFKVP  TSAIITN
Sbjct:   39 RRSGGKVSFKVTLTSDPKLPYKVF--SVPEEAPFVAVLKFAAEEFKVPPQTSAIITN 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102918.617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7I5E928_HAECO1.240e-2083.93Ubiquitin-fold modifier 1 n=2 Tax=Ecdysozoa TaxID=... [more]
A0A0N4XXI4_NIPBR3.110e-2082.14Ubiquitin-fold modifier 1 n=5 Tax=Strongylida TaxI... [more]
A0A5B8MXX3_9CHLO8.890e-2083.05Ubiquitin-fold modifier 1 n=1 Tax=Chloropicon prim... [more]
A0A183GJH7_HELPZ1.380e-1982.14Mitochondrial import receptor subunit TOM7 homolog... [more]
A0A0N5AZW3_9BILA1.610e-1980.36Ubiquitin-fold modifier 1 n=1 Tax=Syphacia muris T... [more]
A9TIT4_PHYPA1.740e-1975.86Ubiquitin-fold modifier 1 n=3 Tax=Embryophyta TaxI... [more]
A0A2V0PP16_9CHLO1.940e-1988.46Ubiquitin-fold modifier 1 n=2 Tax=Chlorophyta TaxI... [more]
UFM1_CAEEL2.410e-1978.57Ubiquitin-fold modifier 1 n=3 Tax=Caenorhabditis T... [more]
W2TCE6_NECAM3.400e-1982.14Mitochondrial import receptor subunit TOM7 homolog... [more]
A0A7I4E6A6_PHYPA4.300e-1978.95Ubiquitin-fold modifier 1 n=2 Tax=Physcomitrium pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102918contigM-pyrifera_M_contig102918:276..590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score83.6
Seed ortholog evalue3.5e-14
Seed eggNOG ortholog6239.ZK652.3.2
KEGG koko:K12162
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0070647,GO:0071569,GO:0071704,GO:1901564,GO:1990564,GO:1990592
EggNOG free text desc.Ubiquitin-like modifier
EggNOG OGs1KZHZ@119089,3A62T@33154,3BSQK@33208,3D9K6@33213,40E6V@6231,412WE@6236,KOG3483@1,KOG3483@2759
COG Functional cat.S
Best tax levelRhabditida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons3
Model size180
Cds size180
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102918.617.1prot_M-pyrifera_M_contig102918.617.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102918 276..590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.7182794-CDS-M-pyrifera_M_contig102918:275..3581622815533.7182794-CDS-M-pyrifera_M_contig102918:275..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102918 276..358 +
1692277452.7847636-CDS-M-pyrifera_M_contig102918:275..3581692277452.7847636-CDS-M-pyrifera_M_contig102918:275..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102918 276..358 +
1622815533.732449-CDS-M-pyrifera_M_contig102918:422..4801622815533.732449-CDS-M-pyrifera_M_contig102918:422..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102918 423..480 +
1692277452.8055713-CDS-M-pyrifera_M_contig102918:422..4801692277452.8055713-CDS-M-pyrifera_M_contig102918:422..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102918 423..480 +
1622815533.7464306-CDS-M-pyrifera_M_contig102918:551..5901622815533.7464306-CDS-M-pyrifera_M_contig102918:551..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102918 552..590 +
1692277452.8169167-CDS-M-pyrifera_M_contig102918:551..5901692277452.8169167-CDS-M-pyrifera_M_contig102918:551..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102918 552..590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102918.617.1

>prot_M-pyrifera_M_contig102918.617.1 ID=prot_M-pyrifera_M_contig102918.617.1|Name=mRNA_M-pyrifera_M_contig102918.617.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
LCDRSSGPKVTFKITLTSDPKLPYRVYVISVPEAAPFVAVLKYAAEEFKV
PAATSAIITN
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mRNA from alignment at M-pyrifera_M_contig102918:276..590+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102918.617.1 ID=mRNA_M-pyrifera_M_contig102918.617.1|Name=mRNA_M-pyrifera_M_contig102918.617.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig102918:276..590+ (Macrocystis pyrifera P11B4 male)
CTGTGTGACAGGTCCAGCGGCCCCAAGGTCACCTTCAAAATCACCCTCAC
CTCCGACCCCAAGCTGCCTTACCGAGTGTACGTGTGCCCTATGCTGCTAA
TGATTCATCACTGACGCAGTAGCGTGGATCTCGTCCGTATCGTGCAGCAT
CTCGGTGCCAGAGGCTGCTCCGTTCGTCGCTGTCCTCAAGTATGCTGCTG
AAGAGGTGCGTTTCCTGCCGCCGTACCCCCACCTGCCTTCCCCTGACCTC
GTGACTTGTACATCCTCTCCGTTCAGTTCAAGGTCCCGGCGGCAACCAGC
GCCATCATCACCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102918:276..590+

>mRNA_M-pyrifera_M_contig102918.617.1 ID=mRNA_M-pyrifera_M_contig102918.617.1|Name=mRNA_M-pyrifera_M_contig102918.617.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig102918:276..590+ (Macrocystis pyrifera P11B4 male)
CTGTGTGACAGGTCCAGCGGCCCCAAGGTCACCTTCAAAATCACCCTCAC
CTCCGACCCCAAGCTGCCTTACCGAGTGTACGTCTGTGTGACAGGTCCAG
CGGCCCCAAGGTCACCTTCAAAATCACCCTCACCTCCGACCCCAAGCTGC
CTTACCGAGTGTACGTCATCTCGGTGCCAGAGGCTGCTCCGTTCGTCGCT
GTCCTCAAGTATGCTGCTGAAGAGCATCTCGGTGCCAGAGGCTGCTCCGT
TCGTCGCTGTCCTCAAGTATGCTGCTGAAGAGTTCAAGGTCCCGGCGGCA
ACCAGCGCCATCATCACCAACTTCAAGGTCCCGGCGGCAACCAGCGCCAT
CATCACCAAC
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