mRNA_M-pyrifera_M_contig102888.612.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102888.612.1
Unique NamemRNA_M-pyrifera_M_contig102888.612.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102888.612.1 vs. uniprot
Match: A0A6H5JP99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP99_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.900e-17
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 MVRVVVARTREGLEAVELSTGRPLGAVALPAAA-SGAGVYADLNGDGVVDHVQ-VGARDG 174
            +VRVV+ARTR+GLEAVELSTG+PL AVALPAA  + AGVY DLNGDGVVDHVQ VG R G
Sbjct:  444 LVRVVLARTRDGLEAVELSTGKPLSAVALPAATGTDAGVYVDLNGDGVVDHVQAVGTRGG 503          
BLAST of mRNA_M-pyrifera_M_contig102888.612.1 vs. uniprot
Match: D8LK18_ECTSI (Aldehyde dehydrogenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK18_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.040e-14
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 1
Query:   22 RTREGLEAVELSTGRPLGAVALPAAA-SGAGVYADLNGDGVVDHVQ-VGARDG 174
            RTR+GLEAVELSTG+PL AVALPAAA + AGVY DLNGDGVVDHVQ VG R G
Sbjct:  341 RTRDGLEAVELSTGKPLSAVALPAAAGTDAGVYVDLNGDGVVDHVQAVGTRGG 393          
BLAST of mRNA_M-pyrifera_M_contig102888.612.1 vs. uniprot
Match: UPI000C1CE79E (uncharacterized protein LOC111373976 isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE79E)

HSP 1 Score: 52.4 bits (124), Expect = 2.210e-6
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   10 VVVARTREGLEAVELSTGRPLGAVALPAAASGAGVYADLNGDGVVDHVQVGARDG 174
            VVVA  REG+EAV L++GR L  + L       G++AD+NGDGV+DHVQV  R+G
Sbjct:  395 VVVAHQREGIEAVHLASGRTLCKLHLQEG----GLHADINGDGVLDHVQVVGRNG 445          
BLAST of mRNA_M-pyrifera_M_contig102888.612.1 vs. uniprot
Match: A0A804I2N0_MUSAM ((wild Malaysian banana) hypothetical protein n=2 Tax=Musa TaxID=4640 RepID=A0A804I2N0_MUSAM)

HSP 1 Score: 51.2 bits (121), Expect = 5.660e-6
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   10 VVVARTREGLEAVELSTGRPLGAVALPAAASGAGVYADLNGDGVVDHVQVGARDG 174
            VVVA  +EG+EAV L++GR +  + LP      G++AD+NGDGV+DHVQV   +G
Sbjct:  394 VVVAHQKEGIEAVHLASGRTICQLHLPEG----GLHADINGDGVLDHVQVVGANG 444          
BLAST of mRNA_M-pyrifera_M_contig102888.612.1 vs. uniprot
Match: A0A5P1F657_ASPOF (Uncharacterized protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1F657_ASPOF)

HSP 1 Score: 50.8 bits (120), Expect = 7.740e-6
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:   10 VVVARTREGLEAVELSTGRPLGAVALPAAASGAGVYADLNGDGVVDHVQV 159
            VVVA  +EG+EAV L++GR +  + LP      G++AD+NGDGV+DHVQV
Sbjct:  365 VVVAHQKEGIEAVHLASGRTICKLHLPEG----GLHADINGDGVLDHVQV 410          
BLAST of mRNA_M-pyrifera_M_contig102888.612.1 vs. uniprot
Match: A0A7R9XN42_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9XN42_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 7.740e-6
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   10 VVVARTREGLEAVELSTGRPLGAVALPAAASGAGVYADLNGDGVVDHVQ 156
            V+VA  +EG+E V L TGR L  + LP    G G++AD+NGDGV+DHVQ
Sbjct:  355 VIVAHLQEGIEVVHLFTGRTLCKLLLP----GPGLHADINGDGVLDHVQ 399          
BLAST of mRNA_M-pyrifera_M_contig102888.612.1 vs. uniprot
Match: A0A7I8K498_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K498_SPIIN)

HSP 1 Score: 50.8 bits (120), Expect = 7.750e-6
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   10 VVVARTREGLEAVELSTGRPLGAVALPAAASGAGVYADLNGDGVVDHVQ-VGAR 168
            VVVA  +EG+EA+ L++GR L  + LP      G++AD+NGDGV+DHVQ VG R
Sbjct:  398 VVVAHEKEGIEAIHLASGRTLCKLHLPEG----GLHADINGDGVLDHVQAVGGR 447          
BLAST of mRNA_M-pyrifera_M_contig102888.612.1 vs. uniprot
Match: A0A2I0X922_9ASPA (60S ribosomal protein L29-1 n=5 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0X922_9ASPA)

HSP 1 Score: 50.8 bits (120), Expect = 7.760e-6
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:   10 VVVARTREGLEAVELSTGRPLGAVALPAAASGAGVYADLNGDGVVDHVQV 159
            VVVA  +EG+EAV L++GR +  + LP      G++AD+NGDGV+DHVQV
Sbjct:  394 VVVAHQKEGIEAVHLASGRTICKLHLPEG----GLHADINGDGVLDHVQV 439          
BLAST of mRNA_M-pyrifera_M_contig102888.612.1 vs. uniprot
Match: A0A843WSK9_COLES (Uncharacterized protein (Fragment) n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843WSK9_COLES)

HSP 1 Score: 50.4 bits (119), Expect = 1.050e-5
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   10 VVVARTREGLEAVELSTGRPLGAVALPAAASGAGVYADLNGDGVVDHVQ 156
            VVVA  +EG+EAV L+TGR +  + LP      G++AD+NGDGV+DHVQ
Sbjct:  172 VVVAHEKEGIEAVHLATGRTICKLHLPEG----GLHADVNGDGVLDHVQ 216          
BLAST of mRNA_M-pyrifera_M_contig102888.612.1 vs. uniprot
Match: A9RAT3_PHYPA (Uncharacterized protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RAT3_PHYPA)

HSP 1 Score: 50.1 bits (118), Expect = 1.440e-5
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   10 VVVARTREGLEAVELSTGRPLGAVALPAAASGAGVYADLNGDGVVDHVQ 156
            VVVA  +EG+EAV L+TGR +  + LP      G++AD+NGDGV+DHVQ
Sbjct:  240 VVVAHLKEGIEAVHLATGRTVCKLFLPEG----GLHADVNGDGVLDHVQ 284          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102888.612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP99_9PHAE7.900e-1778.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK18_ECTSI4.040e-1481.13Aldehyde dehydrogenase, putative n=1 Tax=Ectocarpu... [more]
UPI000C1CE79E2.210e-654.55uncharacterized protein LOC111373976 isoform X1 n=... [more]
A0A804I2N0_MUSAM5.660e-650.91(wild Malaysian banana) hypothetical protein n=2 T... [more]
A0A5P1F657_ASPOF7.740e-654.00Uncharacterized protein n=2 Tax=Asparagus officina... [more]
A0A7R9XN42_9CHLO7.740e-655.10Hypothetical protein n=1 Tax=Polyblepharides amyli... [more]
A0A7I8K498_SPIIN7.750e-653.70Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A2I0X922_9ASPA7.760e-654.0060S ribosomal protein L29-1 n=5 Tax=Epidendroideae... [more]
A0A843WSK9_COLES1.050e-555.10Uncharacterized protein (Fragment) n=1 Tax=Colocas... [more]
A9RAT3_PHYPA1.440e-555.10Uncharacterized protein (Fragment) n=1 Tax=Physcom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102888contigM-pyrifera_M_contig102888:425..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog2880.D8LK18
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs28H9E@1,2QPN1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.905192-CDS-M-pyrifera_M_contig102888:424..5981622815532.905192-CDS-M-pyrifera_M_contig102888:424..598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102888 425..598 -
1692277452.3906825-CDS-M-pyrifera_M_contig102888:424..5981692277452.3906825-CDS-M-pyrifera_M_contig102888:424..598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102888 425..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102888.612.1prot_M-pyrifera_M_contig102888.612.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102888 425..598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102888.612.1

>prot_M-pyrifera_M_contig102888.612.1 ID=prot_M-pyrifera_M_contig102888.612.1|Name=mRNA_M-pyrifera_M_contig102888.612.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
MVRVVVARTREGLEAVELSTGRPLGAVALPAAASGAGVYADLNGDGVVDH
VQVGARDG
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mRNA from alignment at M-pyrifera_M_contig102888:425..598-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102888.612.1 ID=mRNA_M-pyrifera_M_contig102888.612.1|Name=mRNA_M-pyrifera_M_contig102888.612.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig102888:425..598- (Macrocystis pyrifera P11B4 male)
ATGGTGAGGGTTGTCGTCGCGCGCACGAGGGAAGGGCTGGAGGCGGTGGA GCTGTCGACCGGGAGGCCGCTGGGCGCGGTGGCGCTGCCCGCGGCGGCGT CCGGCGCCGGGGTGTACGCGGACCTTAATGGCGATGGCGTGGTGGACCAC GTTCAGGTGGGGGCGCGAGACGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102888:425..598-

>mRNA_M-pyrifera_M_contig102888.612.1 ID=mRNA_M-pyrifera_M_contig102888.612.1|Name=mRNA_M-pyrifera_M_contig102888.612.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig102888:425..598- (Macrocystis pyrifera P11B4 male)
ATGGTGAGGGTTGTCGTCGCGCGCACGAGGGAAGGGCTGGAGGCGGTGGA
GCTGTCGACCGGGAGGCCGCTGGGCGCGGTGGCGCTGCCCGCGGCGGCGT
CCGGCGCCGGGGTGTACGCGGACCTTAATGGCGATGGCGTGGTGGACCAC
GTTCAGGTGGGGGCGCGAGACGGCATGGTGAGGGTTGTCGTCGCGCGCAC
GAGGGAAGGGCTGGAGGCGGTGGAGCTGTCGACCGGGAGGCCGCTGGGCG
CGGTGGCGCTGCCCGCGGCGGCGTCCGGCGCCGGGGTGTACGCGGACCTT
AATGGCGATGGCGTGGTGGACCACGTTCAGGTGGGGGCGCGAGACGGC
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