mRNA_M-pyrifera_M_contig102809.598.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102809.598.1
Unique NamemRNA_M-pyrifera_M_contig102809.598.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102809.598.1 vs. uniprot
Match: A0A151ZGN6_9MYCE (CPSF domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZGN6_9MYCE)

HSP 1 Score: 55.1 bits (131), Expect = 1.910e-7
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 1 
Query:    1 GIFLAGVQPLWMFCERDYLRVFPMKTRTPICAVADFHNEIWPNSFVFTTSGS 156
            G+F+ G  PLW+FCE++YLRV  M     I     FHNE   N F++ T  S
Sbjct:  953 GLFITGKSPLWLFCEKNYLRVHCMNNEGAINIFTPFHNENCSNGFIYFTESS 1004
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BLAST of mRNA_M-pyrifera_M_contig102809.598.1 vs. uniprot
Match: L8GPK4_ACACA (CPSF A subunit region protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPK4_ACACA)

HSP 1 Score: 53.9 bits (128), Expect = 4.890e-7
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 GIFLAGVQPLWMFCERDYLRVFPMKTRTPICAVADFHNEIWPNSFVF 141
            G+F++G  P W+F +R Y R++PMK  T + A A+FHN   P+ F++
Sbjct:  980 GVFISGSAPAWVFAQRGYARLYPMKLDTFVRAFAEFHNANCPHGFIY 1026
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102809.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A151ZGN6_9MYCE1.910e-744.23CPSF domain-containing protein n=1 Tax=Tieghemoste... [more]
L8GPK4_ACACA4.890e-742.55CPSF A subunit region protein n=1 Tax=Acanthamoeba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102809contigM-pyrifera_M_contig102809:19..174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.1917622-CDS-M-pyrifera_M_contig102809:18..1741622815532.1917622-CDS-M-pyrifera_M_contig102809:18..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102809 19..174 -
1692277452.1332018-CDS-M-pyrifera_M_contig102809:18..1741692277452.1332018-CDS-M-pyrifera_M_contig102809:18..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102809 19..174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102809.598.1prot_M-pyrifera_M_contig102809.598.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102809 19..174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102809.598.1

>prot_M-pyrifera_M_contig102809.598.1 ID=prot_M-pyrifera_M_contig102809.598.1|Name=mRNA_M-pyrifera_M_contig102809.598.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
GIFLAGVQPLWMFCERDYLRVFPMKTRTPICAVADFHNEIWPNSFVFTTS
GS
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mRNA from alignment at M-pyrifera_M_contig102809:19..174-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102809.598.1 ID=mRNA_M-pyrifera_M_contig102809.598.1|Name=mRNA_M-pyrifera_M_contig102809.598.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig102809:19..174- (Macrocystis pyrifera P11B4 male)
GGCATCTTCCTGGCCGGCGTGCAGCCGCTGTGGATGTTCTGCGAGCGCGA
TTACCTGCGAGTCTTTCCCATGAAGACGCGCACGCCGATCTGCGCCGTGG
CAGACTTCCACAACGAAATCTGGCCCAACTCCTTCGTCTTCACCACCTCT
GGCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102809:19..174-

>mRNA_M-pyrifera_M_contig102809.598.1 ID=mRNA_M-pyrifera_M_contig102809.598.1|Name=mRNA_M-pyrifera_M_contig102809.598.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig102809:19..174- (Macrocystis pyrifera P11B4 male)
GGCATCTTCCTGGCCGGCGTGCAGCCGCTGTGGATGTTCTGCGAGCGCGA
TTACCTGCGAGTCTTTCCCATGAAGACGCGCACGCCGATCTGCGCCGTGG
CAGACTTCCACAACGAAATCTGGCCCAACTCCTTCGTCTTCACCACCTCT
GGCTCCGGCATCTTCCTGGCCGGCGTGCAGCCGCTGTGGATGTTCTGCGA
GCGCGATTACCTGCGAGTCTTTCCCATGAAGACGCGCACGCCGATCTGCG
CCGTGGCAGACTTCCACAACGAAATCTGGCCCAACTCCTTCGTCTTCACC
ACCTCTGGCTCC
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