mRNA_M-pyrifera_M_contig102469.528.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102469.528.1
Unique NamemRNA_M-pyrifera_M_contig102469.528.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102469.528.1 vs. uniprot
Match: A0A3A0DD22_9BACT (Peptidase_A24 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DD22_9BACT)

HSP 1 Score: 137 bits (345), Expect = 3.330e-36
Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 VRNVGSVVLGREAMGFGDVTLMAMIGAFIGWQPCLVVFFVAPFFALAFGVVQLIVHRDAEIPYGPFLCMATALIVLSWRTVWESLVHVFALGGLIGVVMLGLLVVLAMLLVLIRFVRETIA 363
            VR +GSV+LGREAMGFGDVTLMAMIG F+GWQ CL+ FF+AP FAL FGVVQL + +D EI YGPFLC+ATA++ + WR VW     +F LG L+   M   LVV+  LL ++R +R  ++
Sbjct:  312 VRVLGSVMLGREAMGFGDVTLMAMIGTFVGWQACLLAFFLAPLFALLFGVVQLAIRKDNEIYYGPFLCLATAVVAVRWRDVWGWAWPMFDLGWLVPAAMGLALVVMIFLLAIMRSIRNRLS 432          
BLAST of mRNA_M-pyrifera_M_contig102469.528.1 vs. uniprot
Match: A0A7Y5SHN3_9BACT (Prepilin peptidase n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SHN3_9BACT)

HSP 1 Score: 136 bits (342), Expect = 7.420e-36
Identity = 65/124 (52.42%), Postives = 93/124 (75.00%), Query Frame = 1
Query:    1 VRNVGSVVLGREAMGFGDVTLMAMIGAFIGWQPCLVVFFVAPFFALAFGVVQLIVHRDAEIPYGPFLCMATALIVLSWRTVWESLVHVFALGGLIGVVMLGLLVVLAMLLVLIRFVRETIASFR 372
            VR +G+ VLGREAMGFGDVTLMAM+G+F+GWQ CL++FF+APF  L  G++ LI+HR+ EIPYGPFLC+A   +++ W  VW   V +F LG L+ +V   +++ +AM+ VL+  +R  +A+FR
Sbjct:  299 VRVIGTAVLGREAMGFGDVTLMAMLGSFLGWQSCLIIFFLAPFAGLLVGLITLILHRENEIPYGPFLCLAAVFLIVDWAAVWGWAVGLFFLGWLVPLV---IVICMAMMAVLLGMMRLLMAAFR 419          
BLAST of mRNA_M-pyrifera_M_contig102469.528.1 vs. uniprot
Match: A0A7C7V1U9_9PLAN (Prepilin peptidase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7V1U9_9PLAN)

HSP 1 Score: 134 bits (336), Expect = 5.760e-35
Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    1 VRNVGSVVLGREAMGFGDVTLMAMIGAFIGWQPCLVVFFVAPFFALAFGVVQLIVHRDAEIPYGPFLCMATALIVLSWRTVWESLVHVFALGGLIGVVMLGLLVVLAMLLVLIRFVRETIAS 366
            VR +G+  LGREAMGFGDVTLM MIG ++GWQ CLVVFF+APF  L  GVV L+V RD EIPYGPFLC+A   +++ WR +W +    F LG  + VV+L  L ++A+LL LI F++  + +
Sbjct:  298 VRVIGTRALGREAMGFGDVTLMGMIGTYLGWQACLVVFFLAPFAGLLCGVVNLLVRRDGEIPYGPFLCLAALAVIVCWRPLWRAAEPYFGLGWWVPVVILLCLAMMAVLLGLIAFLKRALGA 419          
BLAST of mRNA_M-pyrifera_M_contig102469.528.1 vs. uniprot
Match: A0A5C5WBN6_9BACT (Type IV leader peptidase family protein n=1 Tax=Botrimarina hoheduenensis TaxID=2528000 RepID=A0A5C5WBN6_9BACT)

HSP 1 Score: 132 bits (331), Expect = 4.020e-34
Identity = 66/118 (55.93%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 VRNVGSVVLGREAMGFGDVTLMAMIGAFIGWQPCLVVFFVAPFFALAFGVVQLIVHRDAEIPYGPFLCMATALIVLSWRTVWESLVHVFALGGLIGVVMLGLLVVLAMLLVLIRFVRE 354
            VR +GS+ LGREAMGFGDVTLM M+G F+GWQ  L+ FF+APF  L  G+ QL++ RD EIPYGPFLC+ATA IV+ W  VW     +FALG ++ VV+L  LV+L +LL + R +++
Sbjct:  314 VRIIGSLALGREAMGFGDVTLMMMVGTFVGWQAGLLTFFLAPFAGLVVGIAQLVLCRDDEIPYGPFLCLATAAIVVRWGHVWPEAEKLFALGWIVPVVLLICLVMLGVLLGIWRVIKQ 431          
BLAST of mRNA_M-pyrifera_M_contig102469.528.1 vs. uniprot
Match: A0A7X7KGL2_9BACT (Prepilin peptidase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7KGL2_9BACT)

HSP 1 Score: 131 bits (330), Expect = 4.580e-34
Identity = 64/123 (52.03%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 VRNVGSVVLGREAMGFGDVTLMAMIGAFIGWQPCLVVFFVAPFFALAFGVVQLIVHRDAEIPYGPFLCMATALIVLSWRTVWESLVHVFALGGLIGVVMLGLLVVLAMLLVLIRFVRETIASF 369
            VR +G   LGREAMGFGDVTLMAMIGAF+GWQPC+V+FF+AP   +  G+++L++ RD EIPYGPFLC+AT  +++ W  VW+ +  VF LG LI  VM+  L ++  +L   R +   I  F
Sbjct:  298 VRIIGGAALGREAMGFGDVTLMAMIGAFLGWQPCMVIFFLAPLAGVVVGLLRLLLMRDKEIPYGPFLCLATLFVIVFWNGVWDYVQGVFGLGWLIPAVMVVCLALMGAMLGAWRLILGIIRGF 420          
BLAST of mRNA_M-pyrifera_M_contig102469.528.1 vs. uniprot
Match: A0A1G3AL27_9BACT (Peptidase_A24 domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_16_64_12 TaxID=1801971 RepID=A0A1G3AL27_9BACT)

HSP 1 Score: 122 bits (307), Expect = 1.020e-33
Identity = 60/111 (54.05%), Postives = 83/111 (74.77%), Query Frame = 1
Query:   40 MGFGDVTLMAMIGAFIGWQPCLVVFFVAPFFALAFGVVQLIVHRDAEIPYGPFLCMATALIVLSWRTVWESLVHVFALGGLIGVV-------MLGLLVVLAMLLVLIRFVR 351
            MGFGDVTLMAMIGAF+GWQPCL+VFF+APF  L  G++ LI+ R  EIPYGPFLC+AT ++++ W  +W+    +FALGG++ +V       M+ LL+V  M+L++I+ VR
Sbjct:    1 MGFGDVTLMAMIGAFLGWQPCLIVFFLAPFAGLVVGLMSLILRRGPEIPYGPFLCLATLVVLVRWAALWQFTEPIFALGGILVLVLFLCLALMVPLLIVTRMVLIVIQMVR 111          
BLAST of mRNA_M-pyrifera_M_contig102469.528.1 vs. uniprot
Match: A0A7V4P8Y5_9PLAN (Prepilin peptidase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7V4P8Y5_9PLAN)

HSP 1 Score: 128 bits (322), Expect = 1.610e-33
Identity = 62/120 (51.67%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 VRNVGSVVLGREAMGFGDVTLMAMIGAFIGWQPCLVVFFVAPFFALAFGVVQLIVHRDAEIPYGPFLCMATALIVLSWRTVWESLVHVFALGGLIGVVMLGLLVVLAMLLVLIRFVRETI 360
            VR  G   L REAMGFGDVTLM MIG F+GWQ CL++FF+APF  LA G++QL++ RD EIPYGPFLC+A  ++V+ W  VW+    +F LG L+  VM+  +V+L M+L + + ++ T+
Sbjct:  220 VRLSGGWALRREAMGFGDVTLMMMIGTFLGWQACLLLFFIAPFAGLAVGLLQLVLRRDDEIPYGPFLCLAAGVVVVCWADVWKWAAPLFGLGWLVPAVMIVCVVLLGMVLAIWQLIKATL 339          
BLAST of mRNA_M-pyrifera_M_contig102469.528.1 vs. uniprot
Match: A0A1G2ZVV0_9BACT (Peptidase_A24 domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_16_64_10 TaxID=1801970 RepID=A0A1G2ZVV0_9BACT)

HSP 1 Score: 122 bits (307), Expect = 1.780e-33
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 VRNVGSVVLGREAMGFGDVTLMAMIGAFIGWQPCLVVFFVAPFFALAFGVVQLIVHRDAEIPYGPFLCMATALIVLSWRTVWESLVHVFALGGLIGVVMLGLLVVLAMLLVLIRFVRETIASFR 372
            VR +G+  L +EA+GFGDVTLM M+GAF+GWQPCL+VFF+AP   L  G+VQ I  RD  IPYGPFLC+A  L ++ W T+W  +  +FA+G L+  VM+     + ++L L R +  T+   R
Sbjct:   14 VRQIGAATLKKEALGFGDVTLMMMVGAFLGWQPCLIVFFLAPLAGLGVGLVQWIARRDQVIPYGPFLCLAALLTMVFWATIWNMVGPIFAVGWLVPAVMVLCFAAMWVMLSLWRLLLLTVFDRR 137          
BLAST of mRNA_M-pyrifera_M_contig102469.528.1 vs. uniprot
Match: A0A286RB64_9BACT (Leader peptidase (Prepilin peptidase) / N-methyltransferase n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A286RB64_9BACT)

HSP 1 Score: 129 bits (325), Expect = 2.410e-33
Identity = 60/118 (50.85%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 VRNVGSVVLGREAMGFGDVTLMAMIGAFIGWQPCLVVFFVAPFFALAFGVVQLIVHRDAEIPYGPFLCMATALIVLSWRTVWESLVHVFALGGLIGVVMLGLLVVLAMLLVLIRFVRE 354
            VR VG++VL REA+GFGDVTLMAMIG+++GWQP L++FF+APF  L   +  ++ H++ EIPYGPFLC+     ++ WR VW     +F LGG++ ++++ L+V+LA LL++IR +RE
Sbjct:  303 VRIVGTLVLDREALGFGDVTLMAMIGSYLGWQPGLILFFLAPFAGLVVAIYIIVRHQEVEIPYGPFLCLGALATIVFWRDVWGFASLIFELGGILPLLLVALIVLLAFLLLVIRLIRE 420          
BLAST of mRNA_M-pyrifera_M_contig102469.528.1 vs. uniprot
Match: A0A7C1FSV3_9BACT (Prepilin peptidase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1FSV3_9BACT)

HSP 1 Score: 126 bits (316), Expect = 2.430e-33
Identity = 62/117 (52.99%), Postives = 84/117 (71.79%), Query Frame = 1
Query:    1 VRNVGSVVLGREAMGFGDVTLMAMIGAFIGWQPCLVVFFVAPFFALAFGVVQLIVHRDAEIPYGPFLCMATALIVLSWRTVWESLVHVFALGGLIGVVMLGLLVVLAMLLVLIRFVR 351
            VR +G  +L REAMGFGDV LMAMIGAF+GWQPCLVVFF+AP  ALA G+VQ ++ RD  IPYGPFLC+A   +++ W  VW+ L  + ALG  + + ++  L ++  LL+L+  +R
Sbjct:  141 VRILGHQILQREAMGFGDVLLMAMIGAFLGWQPCLVVFFLAPLLALAAGIVQWLLVRDDSIPYGPFLCLAALAVIVFWARVWDRLYPLLALGWFVPLALVFCLAIMGPLLLLVHRLR 257          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102469.528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3A0DD22_9BACT3.330e-3657.85Peptidase_A24 domain-containing protein n=1 Tax=Pl... [more]
A0A7Y5SHN3_9BACT7.420e-3652.42Prepilin peptidase n=1 Tax=Pirellulales bacterium ... [more]
A0A7C7V1U9_9PLAN5.760e-3554.10Prepilin peptidase n=1 Tax=Planctomycetaceae bacte... [more]
A0A5C5WBN6_9BACT4.020e-3455.93Type IV leader peptidase family protein n=1 Tax=Bo... [more]
A0A7X7KGL2_9BACT4.580e-3452.03Prepilin peptidase n=1 Tax=Pirellulaceae bacterium... [more]
A0A1G3AL27_9BACT1.020e-3354.05Peptidase_A24 domain-containing protein n=1 Tax=Pl... [more]
A0A7V4P8Y5_9PLAN1.610e-3351.67Prepilin peptidase n=1 Tax=Planctomycetaceae bacte... [more]
A0A1G2ZVV0_9BACT1.780e-3348.39Peptidase_A24 domain-containing protein n=1 Tax=Pl... [more]
A0A286RB64_9BACT2.410e-3350.85Leader peptidase (Prepilin peptidase) / N-methyltr... [more]
A0A7C1FSV3_9BACT2.430e-3352.99Prepilin peptidase n=1 Tax=Planctomycetes bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102469contigM-pyrifera_M_contig102469:3..383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score98.2
Seed ortholog evalue2.9e-18
Seed eggNOG ortholog886293.Sinac_2635
Preferred namepilD
KEGG koko:K02236,ko:K02278,ko:K02506,ko:K02654,ko:K10966
KEGG TC3.A.15.2
KEGG ModuleM00331,M00429
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Bacterial Peptidase A24 N-terminal domain
EggNOG OGs2IZQ8@203682,COG1989@1,COG1989@2
EC3.4.23.43
COG Functional cat.NOU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000,ko01002,ko02035,ko02044
Exons1
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.3652885-CDS-M-pyrifera_M_contig102469:2..3831622815527.3652885-CDS-M-pyrifera_M_contig102469:2..383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102469 3..383 +
1692277449.9038038-CDS-M-pyrifera_M_contig102469:2..3831692277449.9038038-CDS-M-pyrifera_M_contig102469:2..383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102469 3..383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102469.528.1prot_M-pyrifera_M_contig102469.528.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102469 3..383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102469.528.1

>prot_M-pyrifera_M_contig102469.528.1 ID=prot_M-pyrifera_M_contig102469.528.1|Name=mRNA_M-pyrifera_M_contig102469.528.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
VRNVGSVVLGREAMGFGDVTLMAMIGAFIGWQPCLVVFFVAPFFALAFGV
VQLIVHRDAEIPYGPFLCMATALIVLSWRTVWESLVHVFALGGLIGVVML
GLLVVLAMLLVLIRFVRETIASFRGG*
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mRNA from alignment at M-pyrifera_M_contig102469:3..383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102469.528.1 ID=mRNA_M-pyrifera_M_contig102469.528.1|Name=mRNA_M-pyrifera_M_contig102469.528.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig102469:3..383+ (Macrocystis pyrifera P11B4 male)
GTTCGCAATGTGGGTTCCGTGGTGTTAGGCCGCGAAGCGATGGGGTTTGG CGACGTGACCCTGATGGCCATGATTGGTGCCTTCATCGGATGGCAGCCAT GTCTGGTGGTGTTCTTCGTGGCGCCCTTTTTCGCACTTGCCTTTGGGGTG GTTCAGCTCATCGTGCACCGCGATGCCGAGATCCCTTATGGCCCCTTCCT GTGTATGGCGACCGCCCTGATTGTGCTTAGTTGGCGGACCGTCTGGGAGA GCCTCGTGCATGTGTTCGCGCTGGGCGGGCTGATTGGTGTCGTGATGCTA GGGCTGTTGGTTGTCCTGGCGATGTTGCTGGTTCTGATTCGCTTTGTCCG CGAGACGATCGCTTCGTTCCGCGGCGGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102469:3..383+

>mRNA_M-pyrifera_M_contig102469.528.1 ID=mRNA_M-pyrifera_M_contig102469.528.1|Name=mRNA_M-pyrifera_M_contig102469.528.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig102469:3..383+ (Macrocystis pyrifera P11B4 male)
GTTCGCAATGTGGGTTCCGTGGTGTTAGGCCGCGAAGCGATGGGGTTTGG
CGACGTGACCCTGATGGCCATGATTGGTGCCTTCATCGGATGGCAGCCAT
GTCTGGTGGTGTTCTTCGTGGCGCCCTTTTTCGCACTTGCCTTTGGGGTG
GTTCAGCTCATCGTGCACCGCGATGCCGAGATCCCTTATGGCCCCTTCCT
GTGTATGGCGACCGCCCTGATTGTGCTTAGTTGGCGGACCGTCTGGGAGA
GCCTCGTGCATGTGTTCGCGCTGGGCGGGCTGATTGGTGTCGTGATGCTA
GGGCTGTTGGTTGTCCTGGCGATGTTGCTGGTTCTGATTCGCTTTGTCCG
CGAGACGATCGCTTCGTTCCGCGGCGGTTGAGTTCGCAATGTGGGTTCCG
TGGTGTTAGGCCGCGAAGCGATGGGGTTTGGCGACGTGACCCTGATGGCC
ATGATTGGTGCCTTCATCGGATGGCAGCCATGTCTGGTGGTGTTCTTCGT
GGCGCCCTTTTTCGCACTTGCCTTTGGGGTGGTTCAGCTCATCGTGCACC
GCGATGCCGAGATCCCTTATGGCCCCTTCCTGTGTATGGCGACCGCCCTG
ATTGTGCTTAGTTGGCGGACCGTCTGGGAGAGCCTCGTGCATGTGTTCGC
GCTGGGCGGGCTGATTGGTGTCGTGATGCTAGGGCTGTTGGTTGTCCTGG
CGATGTTGCTGGTTCTGATTCGCTTTGTCCGCGAGACGATCGCTTCGTTC
CGCGGCGGTTGA
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