mRNA_M-pyrifera_M_contig102468.527.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102468.527.1
Unique NamemRNA_M-pyrifera_M_contig102468.527.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102468.527.1 vs. uniprot
Match: A0A2E8LDW4_9ACTN (Transcriptional regulator WhiB n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LDW4_9ACTN)

HSP 1 Score: 163 bits (412), Expect = 4.510e-50
Identity = 76/101 (75.25%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 DLAACRSVPDAASLFFSEDLGEIAAAKHVCAECPVLAPCLEGALDRREPWGVWGGQLFMNGKMLTVKRRRGRPPKVARPEDQMPVIPVPAHLADQAQRLTA 303
            D+AACR+VP+AA LFFSED+G+IAAAK VCA+C VLA CLEGAL RRE +GVWGGQLF+NGKMLT+KRRRGRPPKVARPEDQMPV+P+P HL    Q+ +A
Sbjct:   22 DIAACRAVPNAADLFFSEDIGDIAAAKRVCADCSVLAECLEGALHRRELFGVWGGQLFINGKMLTMKRRRGRPPKVARPEDQMPVVPIPMHLQATTQKRSA 122
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BLAST of mRNA_M-pyrifera_M_contig102468.527.1 vs. uniprot
Match: A0A6B1AYP7_9ACTN (Transcriptional regulator WhiB n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AYP7_9ACTN)

HSP 1 Score: 162 bits (411), Expect = 7.270e-50
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    7 AACRSVPDAASLFFSEDLGEIAAAKHVCAECPVLAPCLEGALDRREPWGVWGGQLFMNGKMLTVKRRRGRPPKVARPEDQMPVIPVPAHLADQAQRLTA 303
            AAC++V +A  LFFS+D+GEI+AAK VCAECPV+APCLE AL+ +E WGVWGGQLFMNG+MLTVKRRRGRPPKVARPED MPVIPVP HL ++A+R TA
Sbjct:   28 AACKTVDNAYDLFFSDDIGEISAAKRVCAECPVIAPCLETALNNKEQWGVWGGQLFMNGEMLTVKRRRGRPPKVARPEDLMPVIPVPIHLRERAERRTA 126
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BLAST of mRNA_M-pyrifera_M_contig102468.527.1 vs. uniprot
Match: A0A355DBG1_9ACTN (Transcriptional regulator WhiB n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A355DBG1_9ACTN)

HSP 1 Score: 149 bits (377), Expect = 6.300e-45
Identity = 66/94 (70.21%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    7 AACRSVPDAASLFFSEDLGEIAAAKHVCAECPVLAPCLEGALDRREPWGVWGGQLFMNGKMLTVKRRRGRPPKVARPEDQMPVIPVPAHLADQA 288
            AAC  +  +  +FFSEDLG+IA AK +CAECP LAPCLEGAL+RREPWGVWGGQLF NG+ML  KRRRGRPP+V RPEDQ+PV+P+P HL   A
Sbjct:   15 AACSRLGVSLDVFFSEDLGDIAQAKRICAECPALAPCLEGALERREPWGVWGGQLFRNGRMLATKRRRGRPPRVPRPEDQLPVVPIPVHLQRSA 108
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BLAST of mRNA_M-pyrifera_M_contig102468.527.1 vs. uniprot
Match: A0A2D6KHT2_9ACTN (Transcriptional regulator WhiB n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A2D6KHT2_9ACTN)

HSP 1 Score: 147 bits (372), Expect = 3.990e-44
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 DLAACRSVPDAASLFFSEDLGEIAAAKHVCAECPVLAPCLEGALDRREPWGVWGGQLFMNGKMLTVKRRRGRPPKVARPEDQMPVIPVPAHL 276
            D AAC  +     +FFSEDLG+IA AK +CA CP LA CLEGA+ RREPWGVWGGQLF+NG+ML  KRRRGRPPKVARPEDQ+PV+P+PAHL
Sbjct:   13 DDAACSRLGVPLEVFFSEDLGDIAQAKRICAGCPALASCLEGAIQRREPWGVWGGQLFLNGRMLATKRRRGRPPKVARPEDQLPVVPIPAHL 104
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BLAST of mRNA_M-pyrifera_M_contig102468.527.1 vs. uniprot
Match: A0A381YWV1_9ZZZZ (4Fe-4S Wbl-type domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381YWV1_9ZZZZ)

HSP 1 Score: 147 bits (371), Expect = 5.670e-44
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    7 AACRSVPDAASLFFSEDLGEIAAAKHVCAECPVLAPCLEGALDRREPWGVWGGQLFMNGKMLTVKRRRGRPPKVARPEDQMPVIPVPAHL 276
            AAC  +     +FFSEDLG+IA AK +CAECPVLAPCLE A++RREPWGVWGGQLF NG +L  KRRRGRPPKV RPEDQ+PV+P+PAHL
Sbjct:   15 AACARLGVPTGIFFSEDLGDIAQAKGICAECPVLAPCLEAAIERREPWGVWGGQLFRNGHLLATKRRRGRPPKVPRPEDQLPVVPIPAHL 104
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BLAST of mRNA_M-pyrifera_M_contig102468.527.1 vs. uniprot
Match: A0A7Y2DC05_9ACTN (Transcriptional regulator WhiB n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DC05_9ACTN)

HSP 1 Score: 144 bits (364), Expect = 1.020e-42
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    7 AACRSVPDAASLFFSEDLGEIAAAKHVCAECPVLAPCLEGALDRREPWGVWGGQLFMNGKMLTVKRRRGRPPKVARPEDQMPVIPVPAHLADQA 288
            AACR       +FFSEDLGEIA AK +CA CPVLAPCLEGAL RREP+GVWGGQLF+NGKML  KRRRGRPPK ARP DQ+PV+P+P HL + A
Sbjct:   30 AACRVEGTPTDVFFSEDLGEIAQAKAICAGCPVLAPCLEGALLRREPFGVWGGQLFLNGKMLATKRRRGRPPKNARPGDQLPVVPIPVHLRELA 123
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BLAST of mRNA_M-pyrifera_M_contig102468.527.1 vs. uniprot
Match: A0A5Q2RDI9_9ACTN (Transcriptional regulator WhiB n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RDI9_9ACTN)

HSP 1 Score: 141 bits (355), Expect = 1.920e-41
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 DLAACRSVPDAASL---FFSEDLGEIAAAKHVCAECPVLAPCLEGALDRREPWGVWGGQLFMNGKMLTVKRRRGRPPKVARPEDQMPVIPVPAHL 276
            D A+CR V D ASL   FFSE+L +IA AK +C+ CPV+APCLEGAL+RREPWGVWGGQLF+NG++L  KRRRGRPPK  RPEDQ+PV+P+P HL
Sbjct:   22 DAASCR-VDDTASLSHLFFSEELQDIARAKTICSSCPVIAPCLEGALERREPWGVWGGQLFLNGRILAQKRRRGRPPKNPRPEDQLPVVPIPEHL 115
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BLAST of mRNA_M-pyrifera_M_contig102468.527.1 vs. uniprot
Match: A0A2E0ZQF3_9ACTN (Transcriptional regulator WhiB n=4 Tax=root TaxID=1 RepID=A0A2E0ZQF3_9ACTN)

HSP 1 Score: 140 bits (354), Expect = 2.200e-41
Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    7 AACRSVPDAASLFFSEDLGEIAAAKHVCAECPVLAPCLEGALDRREPWGVWGGQLFMNGKMLTVKRRRGRPPKVARPEDQMPVIPVPAHLADQ 285
            A C  +     +FFS+DLG+IA AK +C +CP L PCLEGAL RREPWGVWGGQ+F NG+ML  KRRRGRPPKV RPEDQ+PV+P+P HL  +
Sbjct:   15 AECERLGVPTHVFFSDDLGDIAQAKRICTDCPALVPCLEGALARREPWGVWGGQIFRNGRMLATKRRRGRPPKVPRPEDQLPVVPIPVHLQSE 107
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BLAST of mRNA_M-pyrifera_M_contig102468.527.1 vs. uniprot
Match: A0A8F4FRC7_9ACTN (WhiB family transcriptional regulator n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FRC7_9ACTN)

HSP 1 Score: 140 bits (353), Expect = 3.650e-41
Identity = 62/81 (76.54%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:   34 ASLFFSEDLGEIAAAKHVCAECPVLAPCLEGALDRREPWGVWGGQLFMNGKMLTVKRRRGRPPKVARPEDQMPVIPVPAHL 276
            A+LFFSE+L +IAAAK +CAECPV+A CLEGA+ RREPWGVWGGQLF+NGK+L  KRRRGRPPKVARPEDQ+P +P+P HL
Sbjct:   33 AALFFSEELQDIAAAKRMCAECPVMADCLEGAMRRREPWGVWGGQLFLNGKILASKRRRGRPPKVARPEDQLPDVPIPEHL 113
[Close]
BLAST of mRNA_M-pyrifera_M_contig102468.527.1 vs. uniprot
Match: A0A6N7FPY5_9ACTN (Transcriptional regulator WhiB n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FPY5_9ACTN)

HSP 1 Score: 140 bits (354), Expect = 4.320e-41
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    1 DLAACRSVPDAA--SLFFSEDLGEIAAAKHVCAECPVLAPCLEGALDRREPWGVWGGQLFMNGKMLTVKRRRGRPPKVARPEDQMPVIPVPAHL 276
            D AACR VP+++   LFFS++L +IAAAK +CA+CPVLAPCLEGA+ R+EPWGVWGGQLF+NG++L  KRRRGRPPK  RPEDQ+P +P+P HL
Sbjct:   32 DQAACR-VPESSMTDLFFSDELHDIAAAKRICADCPVLAPCLEGAIARQEPWGVWGGQLFLNGRILASKRRRGRPPKTPRPEDQLPEVPIPEHL 124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102468.527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8LDW4_9ACTN4.510e-5075.25Transcriptional regulator WhiB n=6 Tax=Acidimicrob... [more]
A0A6B1AYP7_9ACTN7.270e-5075.76Transcriptional regulator WhiB n=1 Tax=Acidimicrob... [more]
A0A355DBG1_9ACTN6.300e-4570.21Transcriptional regulator WhiB n=1 Tax=Acidimicrob... [more]
A0A2D6KHT2_9ACTN3.990e-4471.74Transcriptional regulator WhiB n=3 Tax=Actinobacte... [more]
A0A381YWV1_9ZZZZ5.670e-4472.224Fe-4S Wbl-type domain-containing protein n=1 Tax=... [more]
A0A7Y2DC05_9ACTN1.020e-4272.34Transcriptional regulator WhiB n=1 Tax=Acidimicrob... [more]
A0A5Q2RDI9_9ACTN1.920e-4169.47Transcriptional regulator WhiB n=1 Tax=Actinomarin... [more]
A0A2E0ZQF3_9ACTN2.200e-4164.52Transcriptional regulator WhiB n=4 Tax=root TaxID=... [more]
A0A8F4FRC7_9ACTN3.650e-4176.54WhiB family transcriptional regulator n=1 Tax=Aqui... [more]
A0A6N7FPY5_9ACTN4.320e-4168.09Transcriptional regulator WhiB n=1 Tax=Acidimicrob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102468contigM-pyrifera_M_contig102468:3..308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score116.3
Seed ortholog evalue8.3e-24
Seed eggNOG ortholog1229780.BN381_450041
Preferred namewhiB7
KEGG koko:K18958
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0008150,GO:0010033,GO:0033993,GO:0042221,GO:0046677,GO:0050896,GO:0070542,GO:1901700
EggNOG free text desc.Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA
EggNOG OGs2DMIS@1,2IQ99@201174,32RVG@2
COG Functional cat.K
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.332709-CDS-M-pyrifera_M_contig102468:2..3081622815527.332709-CDS-M-pyrifera_M_contig102468:2..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102468 3..308 +
1692277449.8891997-CDS-M-pyrifera_M_contig102468:2..3081692277449.8891997-CDS-M-pyrifera_M_contig102468:2..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102468 3..308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102468.527.1prot_M-pyrifera_M_contig102468.527.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102468 3..308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102468.527.1

>prot_M-pyrifera_M_contig102468.527.1 ID=prot_M-pyrifera_M_contig102468.527.1|Name=mRNA_M-pyrifera_M_contig102468.527.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
DLAACRSVPDAASLFFSEDLGEIAAAKHVCAECPVLAPCLEGALDRREPW
GVWGGQLFMNGKMLTVKRRRGRPPKVARPEDQMPVIPVPAHLADQAQRLT
A*
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mRNA from alignment at M-pyrifera_M_contig102468:3..308+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102468.527.1 ID=mRNA_M-pyrifera_M_contig102468.527.1|Name=mRNA_M-pyrifera_M_contig102468.527.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig102468:3..308+ (Macrocystis pyrifera P11B4 male)
GACCTCGCGGCATGCCGTTCGGTTCCCGACGCGGCGAGCCTGTTCTTCAG
CGAGGATCTCGGGGAGATCGCCGCCGCGAAGCACGTCTGCGCCGAGTGCC
CGGTGCTCGCACCATGCCTCGAAGGCGCGCTCGATCGGCGCGAACCGTGG
GGTGTCTGGGGCGGCCAACTGTTCATGAACGGCAAGATGCTCACCGTCAA
GCGTCGTCGGGGTCGGCCACCGAAGGTGGCCCGCCCGGAGGACCAGATGC
CGGTCATCCCCGTTCCCGCCCACCTGGCCGACCAGGCCCAGAGGTTGACG
GCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102468:3..308+

>mRNA_M-pyrifera_M_contig102468.527.1 ID=mRNA_M-pyrifera_M_contig102468.527.1|Name=mRNA_M-pyrifera_M_contig102468.527.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig102468:3..308+ (Macrocystis pyrifera P11B4 male)
GACCTCGCGGCATGCCGTTCGGTTCCCGACGCGGCGAGCCTGTTCTTCAG
CGAGGATCTCGGGGAGATCGCCGCCGCGAAGCACGTCTGCGCCGAGTGCC
CGGTGCTCGCACCATGCCTCGAAGGCGCGCTCGATCGGCGCGAACCGTGG
GGTGTCTGGGGCGGCCAACTGTTCATGAACGGCAAGATGCTCACCGTCAA
GCGTCGTCGGGGTCGGCCACCGAAGGTGGCCCGCCCGGAGGACCAGATGC
CGGTCATCCCCGTTCCCGCCCACCTGGCCGACCAGGCCCAGAGGTTGACG
GCCTGAGACCTCGCGGCATGCCGTTCGGTTCCCGACGCGGCGAGCCTGTT
CTTCAGCGAGGATCTCGGGGAGATCGCCGCCGCGAAGCACGTCTGCGCCG
AGTGCCCGGTGCTCGCACCATGCCTCGAAGGCGCGCTCGATCGGCGCGAA
CCGTGGGGTGTCTGGGGCGGCCAACTGTTCATGAACGGCAAGATGCTCAC
CGTCAAGCGTCGTCGGGGTCGGCCACCGAAGGTGGCCCGCCCGGAGGACC
AGATGCCGGTCATCCCCGTTCCCGCCCACCTGGCCGACCAGGCCCAGAGG
TTGACGGCCTGA
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