mRNA_M-pyrifera_M_contig102463.524.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102463.524.1
Unique NamemRNA_M-pyrifera_M_contig102463.524.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102463.524.1 vs. uniprot
Match: A0A2B4S9N2_STYPI (Crt-like 1 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S9N2_STYPI)

HSP 1 Score: 107 bits (268), Expect = 8.120e-25
Identity = 60/141 (42.55%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    1 FASDPTRTPPFLQSVLQCFIVPMTIVSRILYTHFVDSRTQLLCAAAVVVGLFISLIPTIFDLGEASPAAVPLAKGAGRVLWPLCFLLGMVPAAMMGVLEEVILKTGKATEVEEVVDQVYFLTYSMWGQIATIALFFWVDII 423
            FAS  +RTPP+LQ++L  F++P+TI+ RI+  H   SR +LLC   +++GLFISLIPTIF   +A+           RV+WP+ F+LG +PAA+M VLEE  L+    T  E+ +  +YFL +S   Q+  I +  W++I+
Sbjct:  148 FASKGSRTPPYLQNILGSFMIPLTILFRIVIVHKKPSRQKLLCGLVIMIGLFISLIPTIFS--DANSKDQDEVDDISRVMWPIMFMLGFIPAALMVVLEEKGLQMESETS-EDRIGVIYFLFWSTTYQVICIFVLLWLNIL 285          
BLAST of mRNA_M-pyrifera_M_contig102463.524.1 vs. uniprot
Match: A0A3M6UFV9_POCDA (Uncharacterized protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UFV9_POCDA)

HSP 1 Score: 104 bits (259), Expect = 5.860e-24
Identity = 61/144 (42.36%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    1 FASDPTRTPPFLQSVLQCFIVPMTIVSRILYTHFVDSRTQLLCAAAVVVGLFISLIPTIFDLGEASPAAVPL---AKGAGRVLWPLCFLLGMVPAAMMGVLEEVILKTGKATEVEEVVDQVYFLTYSMWGQIATIALFFWVDII 423
            FAS  +RTPP+LQ++L  F++P+TI+ R+L      +  +L C   VVVGLFI LIPTIF   E  P A      A+G  RV+WP+ F+LG VPAA+M V+EE  +K    +  ++ ++ +YFL ++   Q+  + L FW+DI+
Sbjct:  145 FASKGSRTPPYLQAILGNFLIPLTILFRLLIVRKKPTLLKLSCGVIVVVGLFICLIPTIFP--EVDPKAEKRKNDAQGVSRVMWPIIFMLGFVPAAVMNVIEEKGVKMESQSS-KKGINLLYFLFWTSSYQLLCVGLLFWLDIL 285          
BLAST of mRNA_M-pyrifera_M_contig102463.524.1 vs. uniprot
Match: UPI0009E532D9 (crt homolog 2-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E532D9)

HSP 1 Score: 103 bits (258), Expect = 1.970e-23
Identity = 62/148 (41.89%), Postives = 91/148 (61.49%), Query Frame = 1
Query:    1 FASDPTRTPPFLQSVLQCFIVPMTIVSRILYTHFVDSRTQLLCAAAVVVGLFISLIPTIFDLGEASPAAVPLAK-------GAGRVLWPLCFLLGMVPAAMMGVLEEVILKTGKATEVEEVVDQVYFLTYSMWGQIATIALFFWVDII 423
            FAS  +RTPP+LQ++L  F++P+TI+ R+L      +  +LLC  AVVVGLF+ LIPTIF      P+  P A+       G  RV+WPL F+LG +PAA+M VLEE  +K    T   + ++ VY+L ++   Q+  +   FW+DI+
Sbjct:  143 FASKGSRTPPYLQAILGNFMIPLTILFRVLIVRKRPTLLKLLCGLAVVVGLFVCLIPTIF------PSVDPKAEKTKNETHGVSRVMWPLIFMLGFIPAAIMNVLEEHGVKMENQTS-RKGINLVYYLFWTSLYQLICVGSLFWLDIL 283          
BLAST of mRNA_M-pyrifera_M_contig102463.524.1 vs. uniprot
Match: B3S0V9_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3S0V9_TRIAD)

HSP 1 Score: 103 bits (257), Expect = 2.150e-23
Identity = 56/141 (39.72%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 FASDPTRTPPFLQSVLQCFIVPMTIVSRILYTHFVDSRTQLLCAAAVVVGLFISLIPTIFDL--GEASPAAVPLAKGAGRVLWPLCFLLGMVPAAMMGVLEEVILKTGKATEVEEVVDQVYFLTYSMWGQIATIALFFWVD 417
            FAS  TRTPP+LQ++LQ   +P+ ++ R L  H   +  +L+C   V++ LFI LIP IF    G+A       A GA  ++WP+ F++G +PAA M   EE  LK     E    V+ +++LT++ + Q+ T+ALFFW+D
Sbjct:  135 FASSGTRTPPYLQAILQNVSIPLIVIVRYLLLHKKPTLKKLICTVVVMLCLFICLIPKIFPSINGKAQHHLPHAATGAAAIIWPIIFMIGFIPAAFMNAYEEAGLKMKSPNEKR--VNAIWYLTWTSFYQLVTVALFFWLD 273          
BLAST of mRNA_M-pyrifera_M_contig102463.524.1 vs. uniprot
Match: A0A2B4S887_STYPI (Crt-like 1 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S887_STYPI)

HSP 1 Score: 103 bits (256), Expect = 3.960e-23
Identity = 61/144 (42.36%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    1 FASDPTRTPPFLQSVLQCFIVPMTIVSRILYTHFVDSRTQLLCAAAVVVGLFISLIPTIFDLGEASPAAVPL---AKGAGRVLWPLCFLLGMVPAAMMGVLEEVILKTGKATEVEEVVDQVYFLTYSMWGQIATIALFFWVDII 423
            FAS  +RTPP+LQ++L  F++P+TI+ R+L      +  +L C   VVVGLFI LIPTIF   E  P A      A+G  RV+WP+ F+LG VPAA+M VLEE  +K    +  ++ ++ +YFL ++   Q+  + + FW+DI+
Sbjct:  146 FASKGSRTPPYLQAILGNFMIPLTILFRVLIVRKKPTLLKLSCGIIVVVGLFICLIPTIFP--EVDPKAEKKKNEAEGVSRVMWPIIFMLGFVPAAIMNVLEERGVKMENRSS-KKGINLLYFLFWTSSYQLLCVGVLFWLDIL 286          
BLAST of mRNA_M-pyrifera_M_contig102463.524.1 vs. uniprot
Match: UPI000F557114 (uncharacterized protein LOC113664762 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F557114)

HSP 1 Score: 100 bits (249), Expect = 2.790e-22
Identity = 57/142 (40.14%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    1 FASDPTRTPPFLQSVLQCFIVPMTIVSRILYTHFVDSRTQLLCAAAVVVGLFISLIPTIF-DLGEASPAAVPLAKGAGRVLWPLCFLLGMVPAAMMGVLEEVILKTGKATEVEEVVDQVYFLTYSMWGQIATIALFFWVDII 423
            FAS  +RTPP+LQ++L  F++P+TI+ R+L      +  +L C   VVVGLFI LIPTIF D+   +      A+G  RV+WP+ F+LG  P A+M V+EE  +K    +  ++ ++ +YFL ++   Q+  + L FW+DI+
Sbjct:  146 FASKGSRTPPYLQAILGNFMIPLTILIRMLILRKKPTLLKLSCGVIVVVGLFICLIPTIFPDVDPKAEKRKNDAQGVSRVMWPMIFMLGFAPLAVMNVIEEKGVKMESKSS-KKCINLMYFLFWTSSYQLLCVGLLFWLDIL 286          
BLAST of mRNA_M-pyrifera_M_contig102463.524.1 vs. uniprot
Match: UPI0009E560D5 (crt homolog 3-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E560D5)

HSP 1 Score: 100 bits (250), Expect = 2.940e-22
Identity = 56/143 (39.16%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    1 FASDPTRTPPFLQSVLQCFIVPMTIVSRILYTHFVDSRTQLLCAAAVVVGLFISLIPTIFDL--GEASPAAVPLAKGAGRVLWPLCFLLGMVPAAMMGVLEEVILKTGKATEVEEVVDQVYFLTYSMWGQIATIALFFWVDII 423
            FA+  TRTPP+LQ++L  F++P+T++ R++      +  +LLC+ AV++GLFI +IPT+F     + S           RV+WP+ F+LG VP A M V EE  +K    T  E++ + VYFL ++   ++ ++ALFFWVD++
Sbjct:  146 FAAKGTRTPPYLQAILGNFLIPLTVLFRLIILRRKPTLLKLLCSFAVIIGLFICIIPTVFPEIDSKISDETTIEIDSFSRVMWPIIFMLGSVPEATMRVYEERGVKIEDDTSNEQI-NLVYFLFWTSTYELLSVALFFWVDLL 287          
BLAST of mRNA_M-pyrifera_M_contig102463.524.1 vs. uniprot
Match: A0A3M6UFT3_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UFT3_POCDA)

HSP 1 Score: 100 bits (249), Expect = 6.850e-22
Identity = 57/142 (40.14%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    1 FASDPTRTPPFLQSVLQCFIVPMTIVSRILYTHFVDSRTQLLCAAAVVVGLFISLIPTIF-DLGEASPAAVPLAKGAGRVLWPLCFLLGMVPAAMMGVLEEVILKTGKATEVEEVVDQVYFLTYSMWGQIATIALFFWVDII 423
            FAS  +RTPP+LQ++L  F++P+TI+ R+L      +  +L C   VVVGLFI LIPTIF D+   +      A+G  RV+WP+ F+LG  P A+M V+EE  +K    +  ++ ++ +YFL ++   Q+  + L FW+DI+
Sbjct:  510 FASKGSRTPPYLQAILGNFMIPLTILIRMLILRKKPTLLKLSCGVIVVVGLFICLIPTIFPDVDPKAEKRKNDAQGVSRVMWPMIFMLGFAPLAVMNVIEEKGVKMESKSS-KKCINLMYFLFWTSSYQLLCVGLLFWLDIL 650          
BLAST of mRNA_M-pyrifera_M_contig102463.524.1 vs. uniprot
Match: UPI0009E24562 (crt homolog 2-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E24562)

HSP 1 Score: 99.8 bits (247), Expect = 7.150e-22
Identity = 59/142 (41.55%), Postives = 84/142 (59.15%), Query Frame = 1
Query:    1 FASDPTRTPPFLQSVLQCFIVPMTIVSRILYTHFVDSRTQLLCAAAVVVGLFISLIPTIFDLGEASPAAVPL-AKGAGRVLWPLCFLLGMVPAAMMGVLEEVILKTGKATEVEEVVDQVYFLTYSMWGQIATIALFFWVDII 423
            FAS  +RTPP+LQ++L  F +P+TI+ R+L      +  +LLC  AVVVGLF+ LIPTIF   +         A G  RV+WPL F+LG VPA +M V+ E  +K         + + VYFL ++   Q+  + L FW+DI+
Sbjct:  146 FASKGSRTPPYLQAILGNFGIPLTILFRVLIVRKRPTLLKLLCGLAVVVGLFVCLIPTIFPAVDPKAGKTKTEAHGVSRVMWPLIFMLGFVPATVMNVIIERGVKMENQISRRRI-NLVYFLFWTSLYQLLCVGLLFWLDIL 286          
BLAST of mRNA_M-pyrifera_M_contig102463.524.1 vs. uniprot
Match: A0A8J9ZHY9_BRALA (Hypp1431 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZHY9_BRALA)

HSP 1 Score: 99.0 bits (245), Expect = 1.630e-21
Identity = 59/140 (42.14%), Postives = 81/140 (57.86%), Query Frame = 1
Query:    4 ASDPTRTPPFLQSVLQCFIVPMTIVSRILYTHFVDSRTQLLCAAAVVVGLFISLIPTIFDLGEASPAAVPLAKGAGRVLWPLCFLLGMVPAAMMGVLEEVILKTGKATEVEEVVDQVYFLTYSMWGQIATIALFFWVDII 423
            AS  TRT P+LQ++L  F +P+TI+ R L      +R +  C+  V+V LFI L+P +     A  A  P AKGA  VLWPLCF++G VPAA M V+EE ++K  K    E++   ++FL +    Q    A  FW DII
Sbjct:  203 ASSGTRTAPYLQAILGNFTIPITILLRFLVLRKKPTRRKFSCSMLVLVSLFICLLPKMIPALGADKA--PGAKGAAGVLWPLCFMIGFVPAAAMNVIEEKVMKMTKGARREQI-SLIWFLFWESVYQFLCAAALFWTDII 339          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102463.524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2B4S9N2_STYPI8.120e-2542.55Crt-like 1 n=1 Tax=Stylophora pistillata TaxID=504... [more]
A0A3M6UFV9_POCDA5.860e-2442.36Uncharacterized protein n=2 Tax=Pocillopora damico... [more]
UPI0009E532D91.970e-2341.89crt homolog 2-like n=1 Tax=Orbicella faveolata Tax... [more]
B3S0V9_TRIAD2.150e-2339.72Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
A0A2B4S887_STYPI3.960e-2342.36Crt-like 1 n=1 Tax=Stylophora pistillata TaxID=504... [more]
UPI000F5571142.790e-2240.14uncharacterized protein LOC113664762 n=1 Tax=Pocil... [more]
UPI0009E560D52.940e-2239.16crt homolog 3-like n=1 Tax=Orbicella faveolata Tax... [more]
A0A3M6UFT3_POCDA6.850e-2240.14Uncharacterized protein n=1 Tax=Pocillopora damico... [more]
UPI0009E245627.150e-2241.55crt homolog 2-like n=1 Tax=Orbicella faveolata Tax... [more]
A0A8J9ZHY9_BRALA1.630e-2142.14Hypp1431 protein n=2 Tax=Branchiostoma lanceolatum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102463contigM-pyrifera_M_contig102463:1..660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score102.1
Seed ortholog evalue2.2e-19
Seed eggNOG ortholog10228.TriadP57187
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.CRT-like, chloroquine-resistance transporter-like
EggNOG OGs294AJ@1,2RB7Q@2759,39YIG@33154,3BK6Y@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons2
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815527.166485-CDS-M-pyrifera_M_contig102463:0..3271622815527.166485-CDS-M-pyrifera_M_contig102463:0..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102463 1..327 +
1692277449.8360782-CDS-M-pyrifera_M_contig102463:0..3271692277449.8360782-CDS-M-pyrifera_M_contig102463:0..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102463 1..327 +
1622815527.1833303-CDS-M-pyrifera_M_contig102463:564..6601622815527.1833303-CDS-M-pyrifera_M_contig102463:564..660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102463 565..660 +
1692277449.8454247-CDS-M-pyrifera_M_contig102463:564..6601692277449.8454247-CDS-M-pyrifera_M_contig102463:564..660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102463 565..660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102463.524.1prot_M-pyrifera_M_contig102463.524.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102463 1..660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102463.524.1

>prot_M-pyrifera_M_contig102463.524.1 ID=prot_M-pyrifera_M_contig102463.524.1|Name=mRNA_M-pyrifera_M_contig102463.524.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
FASDPTRTPPFLQSVLQCFIVPMTIVSRILYTHFVDSRTQLLCAAAVVVG
LFISLIPTIFDLGEASPAAVPLAKGAGRVLWPLCFLLGMVPAAMMGVLEE
VILKTGKATEVEEVVDQVYFLTYSMWGQIATIALFFWVDII
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mRNA from alignment at M-pyrifera_M_contig102463:1..660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102463.524.1 ID=mRNA_M-pyrifera_M_contig102463.524.1|Name=mRNA_M-pyrifera_M_contig102463.524.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig102463:1..660+ (Macrocystis pyrifera P11B4 male)
TTTGCGTCCGATCCCACTCGAACACCTCCATTCTTGCAGTCGGTTCTGCA GTGTTTCATTGTTCCAATGACAATTGTGAGCCGCATCCTCTACACACACT TTGTAGACTCGCGAACACAGCTGCTGTGTGCAGCAGCAGTTGTCGTAGGT CTCTTCATATCCCTCATTCCCACCATCTTTGACCTTGGAGAGGCTTCTCC AGCTGCAGTCCCGCTGGCGAAAGGAGCAGGGCGCGTGTTGTGGCCGTTGT GTTTTTTGTTGGGTATGGTTCCAGCAGCAATGATGGGTGTGTTGGAAGAA GTGATCTTGAAGACTGGAAAAGCAACAGTCACATGGAGGAAAGGACCATG CCACTTTGATACCAAAGAGTCATTGTTGAAGGAAGAACAAGAAGAAGCTG CCAGAGCGCTTGAATCCGCAACAGATGCCACACAGCTTTCCCTTGCAGAT TCCACACCTCCCAAACCATCAAGAGTAACACTTGATTCCACAATTCAAGA GAAAGGAGTTGGGGAAGTTGTTGGTGGTGGCATGTTGGGTGGAGGAGCTG GTGTGGGGGAAGAGGAAGTAGAAGAGGTGGTGGACCAAGTCTACTTCTTG ACGTACTCGATGTGGGGTCAAATTGCGACAATTGCGCTCTTCTTTTGGGT CGACATCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102463:1..660+

>mRNA_M-pyrifera_M_contig102463.524.1 ID=mRNA_M-pyrifera_M_contig102463.524.1|Name=mRNA_M-pyrifera_M_contig102463.524.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig102463:1..660+ (Macrocystis pyrifera P11B4 male)
TTTGCGTCCGATCCCACTCGAACACCTCCATTCTTGCAGTCGGTTCTGCA
GTGTTTCATTGTTCCAATGACAATTGTGAGCCGCATCCTCTACACACACT
TTGTAGACTCGCGAACACAGCTGCTGTGTGCAGCAGCAGTTGTCGTAGGT
CTCTTCATATCCCTCATTCCCACCATCTTTGACCTTGGAGAGGCTTCTCC
AGCTGCAGTCCCGCTGGCGAAAGGAGCAGGGCGCGTGTTGTGGCCGTTGT
GTTTTTTGTTGGGTATGGTTCCAGCAGCAATGATGGGTGTGTTGGAAGAA
GTGATCTTGAAGACTGGAAAAGCAACATTTGCGTCCGATCCCACTCGAAC
ACCTCCATTCTTGCAGTCGGTTCTGCAGTGTTTCATTGTTCCAATGACAA
TTGTGAGCCGCATCCTCTACACACACTTTGTAGACTCGCGAACACAGCTG
CTGTGTGCAGCAGCAGTTGTCGTAGGTCTCTTCATATCCCTCATTCCCAC
CATCTTTGACCTTGGAGAGGCTTCTCCAGCTGCAGTCCCGCTGGCGAAAG
GAGCAGGGCGCGTGTTGTGGCCGTTGTGTTTTTTGTTGGGTATGGTTCCA
GCAGCAATGATGGGTGTGTTGGAAGAAGTGATCTTGAAGACTGGAAAAGC
AACAGAAGTAGAAGAGGTGGTGGACCAAGTCTACTTCTTGACGTACTCGA
TGTGGGGTCAAATTGCGACAATTGCGCTCTTCTTTTGGGTCGACATCATT
GAAGTAGAAGAGGTGGTGGACCAAGTCTACTTCTTGACGTACTCGATGTG
GGGTCAAATTGCGACAATTGCGCTCTTCTTTTGGGTCGACATCATT
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