mRNA_M-pyrifera_M_contig102449.519.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102449.519.1
Unique NamemRNA_M-pyrifera_M_contig102449.519.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102449.519.1 vs. uniprot
Match: A0A2E7KND0_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KND0_9PLAN)

HSP 1 Score: 442 bits (1138), Expect = 1.350e-155
Identity = 216/219 (98.63%), Postives = 217/219 (99.09%), Query Frame = 1 
Query:    1 SIPDDMGEGYLKLSSLSDLMIPVTEEPSFYQRTHSFSVLGSRIAAMILIMCGSAVALLLAGTHVILRGASKTYLVGFTLVVCGLVFITSQQDNLLWYAVRHRISNDLPRFQRALEPLLQEWPARPGTLPEIGRYFAHEKRPGKLTPLGKTQYRTYEQFGADVEQLPDGGVSFALSPHYLYLLEYHPPGSSGPQVEISGDNWTSYLVRSDQLAENWYLTQ 657
            SIPDDMGEGYLKLSSLSDLMIPVTEEPSFYQRTHSFSVLGSRIAAMI IMCGSAVALLLAGTHVILRGASKTYLVGFTLVVCGLVFITSQQ+NLLWYA RHRISNDLPRFQRALEPLLQEWPARPGTLPEIGRYFAHEKRPGKLTPLGKTQYRTYEQFGADVEQLPDGGVSFALSPHYLYLLEYHPPGSSGPQVEISGDNWTSYLVRSDQLAENWYLTQ
Sbjct:  100 SIPDDMGEGYLKLSSLSDLMIPVTEEPSFYQRTHSFSVLGSRIAAMIFIMCGSAVALLLAGTHVILRGASKTYLVGFTLVVCGLVFITSQQNNLLWYAARHRISNDLPRFQRALEPLLQEWPARPGTLPEIGRYFAHEKRPGKLTPLGKTQYRTYEQFGADVEQLPDGGVSFALSPHYLYLLEYHPPGSSGPQVEISGDNWTSYLVRSDQLAENWYLTQ 318
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BLAST of mRNA_M-pyrifera_M_contig102449.519.1 vs. uniprot
Match: A0A5A8AY83_9PLAN (Uncharacterized protein n=2 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8AY83_9PLAN)

HSP 1 Score: 427 bits (1098), Expect = 2.440e-150
Identity = 208/219 (94.98%), Postives = 211/219 (96.35%), Query Frame = 1 
Query:    1 SIPDDMGEGYLKLSSLSDLMIPVTEEPSFYQRTHSFSVLGSRIAAMILIMCGSAVALLLAGTHVILRGASKTYLVGFTLVVCGLVFITSQQDNLLWYAVRHRISNDLPRFQRALEPLLQEWPARPGTLPEIGRYFAHEKRPGKLTPLGKTQYRTYEQFGADVEQLPDGGVSFALSPHYLYLLEYHPPGSSGPQVEISGDNWTSYLVRSDQLAENWYLTQ 657
            SIPDDMGEGYLKLSSLSDLM PVTEEPSFYQRTHSFSVLGSRIAAMI IMCGSAVALLLAGTHVILRGASKTYLVGFTLVVCGL  +TSQQDNLLWYA R+RISNDL RFQRAL PLL+EWP RPGTLPEIGRYFAHEKRPGKLTPLGKTQYRTYEQFGADVEQLPDGGVSFALSPHYLYLLEYHPPGSSGPQVEISGDNWTSYLVRSDQLAENWYLTQ
Sbjct:   46 SIPDDMGEGYLKLSSLSDLMFPVTEEPSFYQRTHSFSVLGSRIAAMIFIMCGSAVALLLAGTHVILRGASKTYLVGFTLVVCGLAVVTSQQDNLLWYAARYRISNDLRRFQRALGPLLEEWPTRPGTLPEIGRYFAHEKRPGKLTPLGKTQYRTYEQFGADVEQLPDGGVSFALSPHYLYLLEYHPPGSSGPQVEISGDNWTSYLVRSDQLAENWYLTQ 264
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BLAST of mRNA_M-pyrifera_M_contig102449.519.1 vs. uniprot
Match: A0A518A8L9_9PLAN (Uncharacterized protein n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A8L9_9PLAN)

HSP 1 Score: 393 bits (1010), Expect = 9.170e-136
Identity = 189/218 (86.70%), Postives = 203/218 (93.12%), Query Frame = 1 
Query:    4 IPDDMGEGYLKLSSLSDLMIPVTEEPSFYQRTHSFSVLGSRIAAMILIMCGSAVALLLAGTHVILRGASKTYLVGFTLVVCGLVFITSQQDNLLWYAVRHRISNDLPRFQRALEPLLQEWPARPGTLPEIGRYFAHEKRPGKLTPLGKTQYRTYEQFGADVEQLPDGGVSFALSPHYLYLLEYHPPGSSGPQVEISGDNWTSYLVRSDQLAENWYLTQ 657
            IPD MGEGYL LS+LS+LMI VTEEPS+YQRTHSFSVLGSRIAAMI I+CGSAVALLLAGTH+ILRGASKTYLVGF LVV GLV   +QQDNLLWYAVRHRISNDLPRFQRALEPLLQEWP RPG LPEIGR+FAHE+RPGKLTPLGKTQYRT+E FGADVE+LPDGGV FAL PHYL+LLEYHPPGSSGPQVEISGDNWTS+LVRSD++AE WYLTQ
Sbjct:  124 IPDAMGEGYLDLSALSELMIQVTEEPSYYQRTHSFSVLGSRIAAMIFILCGSAVALLLAGTHIILRGASKTYLVGFALVVSGLVVFINQQDNLLWYAVRHRISNDLPRFQRALEPLLQEWPTRPGALPEIGRFFAHEERPGKLTPLGKTQYRTHETFGADVEKLPDGGVRFALEPHYLFLLEYHPPGSSGPQVEISGDNWTSHLVRSDRIAEGWYLTQ 341
[Close]
BLAST of mRNA_M-pyrifera_M_contig102449.519.1 vs. uniprot
Match: A0A517RM41_9PLAN (Uncharacterized protein n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RM41_9PLAN)

HSP 1 Score: 316 bits (809), Expect = 1.440e-105
Identity = 147/218 (67.43%), Postives = 178/218 (81.65%), Query Frame = 1 
Query:    4 IPDDMGEGYLKLSSLSDLMIPVTEEPSFYQRTHSFSVLGSRIAAMILIMCGSAVALLLAGTHVILRGASKTYLVGFTLVVCGLVFITSQQDNLLWYAVRHRISNDLPRFQRALEPLLQEWPARPGTLPEIGRYFAHEKRPGKLTPLGKTQYRTYEQFGADVEQLPDGGVSFALSPHYLYLLEYHPPGSSGPQVEISGDNWTSYLVRSDQLAENWYLTQ 657
            IPD+ G+ +L L+++    +    +P+FYQRTHS SVLG RI  MI IMCGSAV+LLLAGTH+IL+GAS+ YL+GFTLVVCG V +  QQDNLLWYA R RIS DLPRF+  LEPLLQ+WP + GTLP IG+YFAHE+RPGKLTPLGKTQY+T+E FGAD+ QLPDGGVSFAL PHYL+LLEYHPP  SGP  ++ G  WTS+L+RS+++AE WYLTQ
Sbjct:  101 IPDETGQVFLNLNAMGASFLEEVGKPTFYQRTHSLSVLGPRIGVMIFIMCGSAVSLLLAGTHIILKGASRMYLLGFTLVVCGFVAVIDQQDNLLWYAARQRISRDLPRFESVLEPLLQKWPTKSGTLPGIGKYFAHEQRPGKLTPLGKTQYKTHETFGADIVQLPDGGVSFALGPHYLFLLEYHPP-ESGPLEKVPGKYWTSHLIRSERIAEGWYLTQ 317
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102449.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7KND0_9PLAN1.350e-15598.63Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A5A8AY83_9PLAN2.440e-15094.98Uncharacterized protein n=2 Tax=Gimesia chilikensi... [more]
A0A518A8L9_9PLAN9.170e-13686.70Uncharacterized protein n=6 Tax=Gimesia panareensi... [more]
A0A517RM41_9PLAN1.440e-10567.43Uncharacterized protein n=2 Tax=Gimesia alba TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102449contigM-pyrifera_M_contig102449:3..659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size657
Cds size642
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.897259-CDS-M-pyrifera_M_contig102449:2..6441622815526.897259-CDS-M-pyrifera_M_contig102449:2..644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102449 3..644 -
1692277449.7088912-CDS-M-pyrifera_M_contig102449:2..6441692277449.7088912-CDS-M-pyrifera_M_contig102449:2..644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102449 3..644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.9117334-UTR-M-pyrifera_M_contig102449:644..6591622815526.9117334-UTR-M-pyrifera_M_contig102449:644..659Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102449 645..659 -
1692277449.7226481-UTR-M-pyrifera_M_contig102449:644..6591692277449.7226481-UTR-M-pyrifera_M_contig102449:644..659Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102449 645..659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102449.519.1prot_M-pyrifera_M_contig102449.519.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102449 3..644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102449.519.1

>prot_M-pyrifera_M_contig102449.519.1 ID=prot_M-pyrifera_M_contig102449.519.1|Name=mRNA_M-pyrifera_M_contig102449.519.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=214bp
MGEGYLKLSSLSDLMIPVTEEPSFYQRTHSFSVLGSRIAAMILIMCGSAV
ALLLAGTHVILRGASKTYLVGFTLVVCGLVFITSQQDNLLWYAVRHRISN
DLPRFQRALEPLLQEWPARPGTLPEIGRYFAHEKRPGKLTPLGKTQYRTY
EQFGADVEQLPDGGVSFALSPHYLYLLEYHPPGSSGPQVEISGDNWTSYL
VRSDQLAENWYLTQ
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mRNA from alignment at M-pyrifera_M_contig102449:3..659-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102449.519.1 ID=mRNA_M-pyrifera_M_contig102449.519.1|Name=mRNA_M-pyrifera_M_contig102449.519.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=657bp|location=Sequence derived from alignment at M-pyrifera_M_contig102449:3..659- (Macrocystis pyrifera P11B4 male)
AGTATCCCAGATGACATGGGGGAGGGATATCTCAAGCTGAGCTCATTGAG
TGATCTGATGATTCCAGTTACGGAAGAACCCTCATTTTACCAGAGGACGC
ATTCTTTTTCGGTTCTTGGATCTCGAATTGCTGCGATGATCCTCATCATG
TGTGGGAGTGCAGTTGCTTTGCTGCTGGCAGGGACACACGTCATTTTGAG
GGGAGCGAGTAAGACGTATCTGGTCGGATTCACATTGGTAGTCTGTGGCC
TCGTGTTTATCACATCTCAACAGGATAATCTGCTCTGGTACGCGGTGCGA
CACCGTATTTCGAATGATTTACCCCGGTTCCAAAGAGCGTTGGAACCGTT
ATTACAGGAGTGGCCTGCGAGACCCGGAACACTACCAGAGATTGGCAGGT
ATTTTGCGCATGAAAAACGTCCAGGAAAACTCACCCCTTTGGGAAAGACT
CAGTATCGGACGTACGAACAATTCGGTGCGGACGTTGAACAACTTCCTGA
CGGCGGCGTCAGCTTCGCACTGTCGCCGCACTACCTGTACCTGCTGGAAT
ATCATCCGCCAGGGAGCAGCGGTCCACAGGTCGAAATTAGCGGTGACAAC
TGGACGTCGTACCTCGTTCGGTCAGATCAGCTCGCGGAGAACTGGTATCT
GACGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102449:3..659-

>mRNA_M-pyrifera_M_contig102449.519.1 ID=mRNA_M-pyrifera_M_contig102449.519.1|Name=mRNA_M-pyrifera_M_contig102449.519.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1284bp|location=Sequence derived from alignment at M-pyrifera_M_contig102449:3..659- (Macrocystis pyrifera P11B4 male)
ATGGGGGAGGGATATCTCAAGCTGAGCTCATTGAGTGATCTGATGATTCC
AGTTACGGAAGAACCCTCATTTTACCAGAGGACGCATTCTTTTTCGGTTC
TTGGATCTCGAATTGCTGCGATGATCCTCATCATGTGTGGGAGTGCAGTT
GCTTTGCTGCTGGCAGGGACACACGTCATTTTGAGGGGAGCGAGTAAGAC
GTATCTGGTCGGATTCACATTGGTAGTCTGTGGCCTCGTGTTTATCACAT
CTCAACAGGATAATCTGCTCTGGTACGCGGTGCGACACCGTATTTCGAAT
GATTTACCCCGGTTCCAAAGAGCGTTGGAACCGTTATTACAGGAGTGGCC
TGCGAGACCCGGAACACTACCAGAGATTGGCAGGTATTTTGCGCATGAAA
AACGTCCAGGAAAACTCACCCCTTTGGGAAAGACTCAGTATCGGACGTAC
GAACAATTCGGTGCGGACGTTGAACAACTTCCTGACGGCGGCGTCAGCTT
CGCACTGTCGCCGCACTACCTGTACCTGCTGGAATATCATCCGCCAGGGA
GCAGCGGTCCACAGGTCGAAATTAGCGGTGACAACTGGACGTCGTACCTC
GTTCGGTCAGATCAGCTCGCGGAGAACTGGTATCTGACGCAGATGGGGGA
GGGATATCTCAAGCTGAGCTCATTGAGTGATCTGATGATTCCAGTTACGG
AAGAACCCTCATTTTACCAGAGGACGCATTCTTTTTCGGTTCTTGGATCT
CGAATTGCTGCGATGATCCTCATCATGTGTGGGAGTGCAGTTGCTTTGCT
GCTGGCAGGGACACACGTCATTTTGAGGGGAGCGAGTAAGACGTATCTGG
TCGGATTCACATTGGTAGTCTGTGGCCTCGTGTTTATCACATCTCAACAG
GATAATCTGCTCTGGTACGCGGTGCGACACCGTATTTCGAATGATTTACC
CCGGTTCCAAAGAGCGTTGGAACCGTTATTACAGGAGTGGCCTGCGAGAC
CCGGAACACTACCAGAGATTGGCAGGTATTTTGCGCATGAAAAACGTCCA
GGAAAACTCACCCCTTTGGGAAAGACTCAGTATCGGACGTACGAACAATT
CGGTGCGGACGTTGAACAACTTCCTGACGGCGGCGTCAGCTTCGCACTGT
CGCCGCACTACCTGTACCTGCTGGAATATCATCCGCCAGGGAGCAGCGGT
CCACAGGTCGAAATTAGCGGTGACAACTGGACGTCGTACCTCGTTCGGTC
AGATCAGCTCGCGGAGAACTGGTATCTGACGCAG
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