mRNA_M-pyrifera_M_contig102443.518.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102443.518.1
Unique NamemRNA_M-pyrifera_M_contig102443.518.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102443.518.1 vs. uniprot
Match: W7TVA4_9STRA (Platelet-activating factor acetylhydrolase ib subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVA4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.930e-22
Identity = 46/104 (44.23%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 HILTASRDLTVRMFVVATGACLHVMSHHESWVRRAVFHPSAPVALSVAEDRTLVVWDVCTGRPKKTVRDAHEHFVTAVAAHPRLPYVATASVSSEQQVRVWGFR 312
            ++++ SRD T+ ++   TG CL  ++ HE+WVR   FHPS    LSV++DR+L V+D+   R  +++ DAHE FV+A+A HP LPY+AT SV+ E  +++W  R
Sbjct:  336 YLVSGSRDKTIMLWNARTGQCLLRLADHENWVRSVRFHPSGQFLLSVSDDRSLRVFDIAKARCIRSLPDAHEQFVSALAQHPTLPYLATGSVNRE--IKLWECR 437
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BLAST of mRNA_M-pyrifera_M_contig102443.518.1 vs. uniprot
Match: A0A5D6Y4C8_9STRA (Lissencephaly-1 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4C8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.360e-19
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    4 ILTASRDLTVRMFVVATGACLHVMSHHESWVRRAVFHPSAPVALSVAEDRTLVVWDVCTGRPKKTVRDAHEHFVTAVAAHPRLPYVATASVSSEQQVRVW 303
            +++ SRD TVR++   +GA L   + HE+WVR   FHP     +SVAEDRTL V+D+ TGR  +T+ +AH HF+T+   HP LP + T  +  ++ + VW
Sbjct:  356 LVSGSRDRTVRLWEAFSGALLMNFASHENWVRCVRFHPCGKYVISVAEDRTLRVYDIETGRCVRTLDEAHAHFLTSADVHPSLPLIVTGGI--DKVINVW 453
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BLAST of mRNA_M-pyrifera_M_contig102443.518.1 vs. uniprot
Match: A0A8K1CCN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL)

HSP 1 Score: 90.1 bits (222), Expect = 5.280e-19
Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    4 ILTASRDLTVRMFVVATGACLHVMSHHESWVRRAVFHPSAPVALSVAEDRTLVVWDVCTGRPKKTVRDAHEHFVTAVAAHPRLPYVATASVSSEQQVRVW 303
            IL+ SRD TVR++   +G  L   + HE+WVR   FHP     +SVAED+T+ V+D+ TGR  +TV +AH HF+T++  HP LP + T S+  ++ + VW
Sbjct:  327 ILSGSRDRTVRLWEAFSGTMLMNFASHENWVRCVRFHPCGKYVVSVAEDKTIRVFDIETGRCVRTVDEAHGHFLTSLDVHPTLPLMVTGSI--DKLINVW 424
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BLAST of mRNA_M-pyrifera_M_contig102443.518.1 vs. uniprot
Match: F0WCC4_9STRA (Lissencephaly-1 homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCC4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.110e-18
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    1 HILTASRDLTVRMFVVATGACLHVMSHHESWVRRAVFHPSAPVALSVAEDRTLVVWDVCTGRPKKTVRDAHEHFVTAVAAHPRLPYVATASVSSEQQVRVW 303
            ++L+ SRD TVR++   +G  L   + HE+WVR   FHPS    +S AED+++ V+D+ TGR  +T+ DAH HFVT +  HP LP + +  +  ++ + VW
Sbjct:  352 YLLSGSRDRTVRLWEALSGVLLMNFTQHENWVRMVRFHPSGKYVISAAEDKSVRVFDIETGRCVRTLLDAHTHFVTCLDIHPTLPLLISGGI--DKVINVW 450
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BLAST of mRNA_M-pyrifera_M_contig102443.518.1 vs. uniprot
Match: K3WAC5_GLOUD (Lissencephaly-1 homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAC5_GLOUD)

HSP 1 Score: 88.2 bits (217), Expect = 3.010e-18
Identity = 42/100 (42.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    4 ILTASRDLTVRMFVVATGACLHVMSHHESWVRRAVFHPSAPVALSVAEDRTLVVWDVCTGRPKKTVRDAHEHFVTAVAAHPRLPYVATASVSSEQQVRVW 303
            +L+ SRD TVR++   +G  L   + HE+WVR   FHP    A+S AED+T+ V+D+ TGR  +T+ +AH HF+T+V  HP LP + + S+  ++ + VW
Sbjct:  365 LLSGSRDRTVRLWEAFSGTLLMNFASHENWVRCVRFHPCGKYAISAAEDKTIRVYDLETGRCVRTLDEAHSHFLTSVDVHPTLPLMISGSI--DKLINVW 462
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BLAST of mRNA_M-pyrifera_M_contig102443.518.1 vs. uniprot
Match: A0A2D4CDK0_PYTIN (Lissencephaly-1 homolog n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDK0_PYTIN)

HSP 1 Score: 87.0 bits (214), Expect = 7.380e-18
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    4 ILTASRDLTVRMFVVATGACLHVMSHHESWVRRAVFHPSAPVALSVAEDRTLVVWDVCTGRPKKTVRDAHEHFVTAVAAHPRLPYVATASVSSEQQVRVW 303
            +L+ SRD TVR++   +   L   S HE+WVR   FHP    A+SVAEDRT+ V D+ TGR  +TV  AHEHF+T++  H  LP + T  +  ++ + VW
Sbjct:  347 LLSGSRDRTVRLWEAFSATMLMSFSSHENWVRCVRFHPCGRYAVSVAEDRTIRVHDIETGRCVRTVDQAHEHFLTSLDIHASLPLMITGGI--DKHINVW 444
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BLAST of mRNA_M-pyrifera_M_contig102443.518.1 vs. uniprot
Match: A0A7S2TW91_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TW91_9EUKA)

HSP 1 Score: 74.3 bits (181), Expect = 2.240e-14
Identity = 38/101 (37.62%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    4 ILTASRDLTVRMFVVATGACLHVMSHHESWVRRAVFHPSAPVALSVAEDRTLVVWDVCTG-RPKKTVRDAHEHFVTAVAAHPRLPYVATASVSSEQQVRVW 303
            I +ASRD T+++F + +GA +  ++ HE+WVR  +FHPS    LS A+D+T+ VWD+    R +K + DAH+ FVT +  +   P +A+  V  +  +++W
Sbjct:   78 IASASRDKTIKIFHIPSGAIVADINGHENWVRGVLFHPSGKYLLSCADDQTIRVWDLEKRFRCRKILEDAHDPFVTCIDWNMSRPVLASGGV--DNIMKIW 176
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BLAST of mRNA_M-pyrifera_M_contig102443.518.1 vs. uniprot
Match: A0A2G9U4F5_TELCI (WD domain, G-beta repeat protein (Fragment) n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9U4F5_TELCI)

HSP 1 Score: 77.0 bits (188), Expect = 2.660e-14
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 1 
Query:    4 ILTASRDLTVRMFVVATGACLHVMSHHESWVRRAVFHPSAPVALSVAEDRTLVVWDVCTGRPKKTVRDAHEHFVTAVAAHPRL------PYVATASVSSEQQVRVW 303
            +++ SRD  ++++   TG  +  +  H++WVR   FHP     +SVA+D+TL VWD+   R  KT+ DAH+HFVT+VA H         P     S S ++ +++W
Sbjct:  228 VVSGSRDKMIKIWDALTGTVMFSLIGHDNWVRGLRFHPRGKFLVSVADDKTLRVWDIAQRRCAKTI-DAHQHFVTSVAGHKANGDLGAGPTHVVVSGSRDKMIKIW 332
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BLAST of mRNA_M-pyrifera_M_contig102443.518.1 vs. uniprot
Match: A0A2R5H004_9STRA (Lissencephaly-1 homolog n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H004_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.330e-13
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:    1 HILTASRDLTVRMFVVATGACLHVMSHHESWVRRAVFHPSAPVALSVAEDRTLVVWDVCTGRPKKTVRDAHEHFVTAVAAHPRLPYVATASVSSEQQVRVW 303
            ++++ SRD TV+++ VATG CL  ++ H++WVR   F P                      R  +TV +AH HF+T++A HP+L  VAT SV +E  V +W
Sbjct:  359 YVVSGSRDRTVKVWQVATGVCLMTLTGHDNWVRAVAFQPHGKYXXXXXXXXXXXXXXXXQQRCVRTVANAHSHFITSMAPHPKLALVATGSVDTE--VALW 457
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BLAST of mRNA_M-pyrifera_M_contig102443.518.1 vs. uniprot
Match: A0A7S3ZCQ1_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZCQ1_9EUKA)

HSP 1 Score: 74.3 bits (181), Expect = 2.000e-13
Identity = 38/101 (37.62%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    4 ILTASRDLTVRMFVVATGACLHVMSHHESWVRRAVFHPSAPVALSVAEDRTLVVWDVCTG-RPKKTVRDAHEHFVTAVAAHPRLPYVATASVSSEQQVRVW 303
            I +ASRD T+++F + +GA +  ++ HE+WVR  +FHPS    LS A+D+T+ VWD+    R +K + DAH+ FVT +  +   P +A+  V  +  +++W
Sbjct:  266 IASASRDKTIKIFHIPSGAMVADINGHENWVRGVLFHPSGKYLLSCADDQTIRVWDLEKRFRCRKILEDAHDPFVTCIDWNMSRPVLASGGV--DNIMKIW 364
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102443.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TVA4_9STRA8.930e-2244.23Platelet-activating factor acetylhydrolase ib subu... [more]
A0A5D6Y4C8_9STRA4.360e-1943.00Lissencephaly-1 homolog n=1 Tax=Pythium brassicum ... [more]
A0A8K1CCN7_PYTOL5.280e-1944.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WCC4_9STRA2.110e-1840.59Lissencephaly-1 homolog n=1 Tax=Albugo laibachii N... [more]
K3WAC5_GLOUD3.010e-1842.00Lissencephaly-1 homolog n=1 Tax=Globisporangium ul... [more]
A0A2D4CDK0_PYTIN7.380e-1844.00Lissencephaly-1 homolog n=2 Tax=Pythium insidiosum... [more]
A0A7S2TW91_9EUKA2.240e-1437.62Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A2G9U4F5_TELCI2.660e-1435.85WD domain, G-beta repeat protein (Fragment) n=1 Ta... [more]
A0A2R5H004_9STRA1.330e-1336.63Lissencephaly-1 homolog n=1 Tax=Hondaea fermentalg... [more]
A0A7S3ZCQ1_9EUKA2.000e-1337.62Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102443contigM-pyrifera_M_contig102443:26..479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog653948.CCA18839
KEGG rclassRC00037,RC00094
KEGG koko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,map00565,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000775,GO:0000776,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005938,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0017016,GO:0017048,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0031267,GO:0031592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044877,GO:0045504,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051179,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051716,GO:0061842,GO:0065007,GO:0070727,GO:0070840,GO:0071539,GO:0071944,GO:0072698,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1905508
EggNOG free text desc.cell division
EggNOG OGsKOG0295@1,KOG0295@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons3
Model size315
Cds size315
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102443.518.1prot_M-pyrifera_M_contig102443.518.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102443 26..479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.8307636-CDS-M-pyrifera_M_contig102443:25..1001622815526.8307636-CDS-M-pyrifera_M_contig102443:25..100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102443 26..100 +
1692277449.6684618-CDS-M-pyrifera_M_contig102443:25..1001692277449.6684618-CDS-M-pyrifera_M_contig102443:25..100Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102443 26..100 +
1622815526.845757-CDS-M-pyrifera_M_contig102443:170..2621622815526.845757-CDS-M-pyrifera_M_contig102443:170..262Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102443 171..262 +
1692277449.6829722-CDS-M-pyrifera_M_contig102443:170..2621692277449.6829722-CDS-M-pyrifera_M_contig102443:170..262Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102443 171..262 +
1622815526.858794-CDS-M-pyrifera_M_contig102443:331..4791622815526.858794-CDS-M-pyrifera_M_contig102443:331..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102443 332..479 +
1692277449.6925075-CDS-M-pyrifera_M_contig102443:331..4791692277449.6925075-CDS-M-pyrifera_M_contig102443:331..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102443 332..479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102443.518.1

>prot_M-pyrifera_M_contig102443.518.1 ID=prot_M-pyrifera_M_contig102443.518.1|Name=mRNA_M-pyrifera_M_contig102443.518.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
HILTASRDLTVRMFVVATGACLHVMSHHESWVRRAVFHPSAPVALSVAED
RTLVVWDVCTGRPKKTVRDAHEHFVTAVAAHPRLPYVATASVSSEQQVRV
WGFR*
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mRNA from alignment at M-pyrifera_M_contig102443:26..479+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102443.518.1 ID=mRNA_M-pyrifera_M_contig102443.518.1|Name=mRNA_M-pyrifera_M_contig102443.518.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=454bp|location=Sequence derived from alignment at M-pyrifera_M_contig102443:26..479+ (Macrocystis pyrifera P11B4 male)
CACATCCTGACTGCGTCCAGGGACTTGACTGTCCGGATGTTCGTCGTGGC
AACTGGCGCGTGCCTGCACGTCATGGTACGTGCTAGCGTGTTGTCCCATC
ATGCATGCAACGAGCTCACGGGCTTGCGTGCGTGCGTTGCTGCAGAGCCA
TCACGAGAGCTGGGTTCGGCGAGCGGTGTTTCACCCGAGCGCACCCGTGG
CACTGTCGGTAGCAGAAGACCGCACACTGGTCGTTTGGTACGTGCAGCGC
CAGCGTGCGGTGTTGCGTTCCACCCGTAGGCTGTTGTGCTCACGATGCGC
ATGCAGGGACGTGTGCACGGGGCGTCCGAAGAAGACGGTACGGGACGCCC
ACGAGCATTTTGTGACCGCTGTGGCGGCACACCCGCGGTTGCCGTACGTT
GCAACTGCGAGCGTGAGCAGTGAGCAGCAGGTGCGGGTGTGGGGGTTCCG
GTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102443:26..479+

>mRNA_M-pyrifera_M_contig102443.518.1 ID=mRNA_M-pyrifera_M_contig102443.518.1|Name=mRNA_M-pyrifera_M_contig102443.518.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig102443:26..479+ (Macrocystis pyrifera P11B4 male)
CACATCCTGACTGCGTCCAGGGACTTGACTGTCCGGATGTTCGTCGTGGC
AACTGGCGCGTGCCTGCACGTCATGCACATCCTGACTGCGTCCAGGGACT
TGACTGTCCGGATGTTCGTCGTGGCAACTGGCGCGTGCCTGCACGTCATG
AGCCATCACGAGAGCTGGGTTCGGCGAGCGGTGTTTCACCCGAGCGCACC
CGTGGCACTGTCGGTAGCAGAAGACCGCACACTGGTCGTTTGAGCCATCA
CGAGAGCTGGGTTCGGCGAGCGGTGTTTCACCCGAGCGCACCCGTGGCAC
TGTCGGTAGCAGAAGACCGCACACTGGTCGTTTGGGACGTGTGCACGGGG
CGTCCGAAGAAGACGGTACGGGACGCCCACGAGCATTTTGTGACCGCTGT
GGCGGCACACCCGCGGTTGCCGTACGTTGCAACTGCGAGCGTGAGCAGTG
AGCAGCAGGTGCGGGTGTGGGGGTTCCGGTGAGGACGTGTGCACGGGGCG
TCCGAAGAAGACGGTACGGGACGCCCACGAGCATTTTGTGACCGCTGTGG
CGGCACACCCGCGGTTGCCGTACGTTGCAACTGCGAGCGTGAGCAGTGAG
CAGCAGGTGCGGGTGTGGGGGTTCCGGTGA
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