mRNA_M-pyrifera_M_contig102424.514.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102424.514.1
Unique NamemRNA_M-pyrifera_M_contig102424.514.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102424.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102424contigM-pyrifera_M_contig102424:122..661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size525
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.6503038-UTR-M-pyrifera_M_contig102424:121..1361622815526.6503038-UTR-M-pyrifera_M_contig102424:121..136Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102424 122..136 +
1692277449.6017919-UTR-M-pyrifera_M_contig102424:121..1361692277449.6017919-UTR-M-pyrifera_M_contig102424:121..136Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102424 122..136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.6625829-CDS-M-pyrifera_M_contig102424:136..6611622815526.6625829-CDS-M-pyrifera_M_contig102424:136..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102424 137..661 +
1692277449.6102087-CDS-M-pyrifera_M_contig102424:136..6611692277449.6102087-CDS-M-pyrifera_M_contig102424:136..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102424 137..661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102424.514.1prot_M-pyrifera_M_contig102424.514.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102424 137..661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102424.514.1

>prot_M-pyrifera_M_contig102424.514.1 ID=prot_M-pyrifera_M_contig102424.514.1|Name=mRNA_M-pyrifera_M_contig102424.514.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
MNIEANEGLKTLLSNPLLLYVYIKLLVDSKKALETVTTRYALYEQFTESL
LRREWVKKIHHNDVPKRITNDPEFLLMSALEELAFLLFTNDASEWGSSSK
QIMLTRVRDKVPAKMVCADTLFSGDYFKEMIRCGLPLQLKGEGRYGFMHK
SFMEFFVARIFLFNIVTGHKEGQTQ
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mRNA from alignment at M-pyrifera_M_contig102424:122..661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102424.514.1 ID=mRNA_M-pyrifera_M_contig102424.514.1|Name=mRNA_M-pyrifera_M_contig102424.514.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig102424:122..661+ (Macrocystis pyrifera P11B4 male)
TCTGAAATAATTAATATGAACATTGAGGCTAATGAAGGCCTAAAGACCTT
ATTGTCAAATCCATTATTATTGTATGTTTATATAAAACTGTTGGTGGATA
GCAAGAAAGCGTTAGAAACTGTAACCACTCGTTATGCGTTGTATGAGCAA
TTTACAGAGTCTTTGTTACGCCGAGAATGGGTCAAGAAAATACATCATAA
TGATGTGCCAAAGCGCATTACAAATGATCCGGAGTTTCTTTTAATGTCGG
CTCTGGAAGAATTAGCCTTTCTTTTATTTACAAACGATGCTTCTGAATGG
GGAAGCTCCTCAAAGCAGATAATGTTGACTCGAGTAAGGGATAAAGTGCC
AGCAAAGATGGTTTGCGCTGATACGTTGTTTTCAGGCGATTATTTTAAAG
AGATGATACGCTGTGGCTTACCCTTACAATTAAAAGGTGAGGGTCGTTAT
GGATTTATGCATAAATCCTTCATGGAGTTTTTTGTGGCGCGAATATTTTT
ATTTAATATAGTCACTGGACATAAAGAAGGGCAAACTCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102424:122..661+

>mRNA_M-pyrifera_M_contig102424.514.1 ID=mRNA_M-pyrifera_M_contig102424.514.1|Name=mRNA_M-pyrifera_M_contig102424.514.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig102424:122..661+ (Macrocystis pyrifera P11B4 male)
ATGAACATTGAGGCTAATGAAGGCCTAAAGACCTTATTGTCAAATCCATT
ATTATTGTATGTTTATATAAAACTGTTGGTGGATAGCAAGAAAGCGTTAG
AAACTGTAACCACTCGTTATGCGTTGTATGAGCAATTTACAGAGTCTTTG
TTACGCCGAGAATGGGTCAAGAAAATACATCATAATGATGTGCCAAAGCG
CATTACAAATGATCCGGAGTTTCTTTTAATGTCGGCTCTGGAAGAATTAG
CCTTTCTTTTATTTACAAACGATGCTTCTGAATGGGGAAGCTCCTCAAAG
CAGATAATGTTGACTCGAGTAAGGGATAAAGTGCCAGCAAAGATGGTTTG
CGCTGATACGTTGTTTTCAGGCGATTATTTTAAAGAGATGATACGCTGTG
GCTTACCCTTACAATTAAAAGGTGAGGGTCGTTATGGATTTATGCATAAA
TCCTTCATGGAGTTTTTTGTGGCGCGAATATTTTTATTTAATATAGTCAC
TGGACATAAAGAAGGGCAAACTCAAATGAACATTGAGGCTAATGAAGGCC
TAAAGACCTTATTGTCAAATCCATTATTATTGTATGTTTATATAAAACTG
TTGGTGGATAGCAAGAAAGCGTTAGAAACTGTAACCACTCGTTATGCGTT
GTATGAGCAATTTACAGAGTCTTTGTTACGCCGAGAATGGGTCAAGAAAA
TACATCATAATGATGTGCCAAAGCGCATTACAAATGATCCGGAGTTTCTT
TTAATGTCGGCTCTGGAAGAATTAGCCTTTCTTTTATTTACAAACGATGC
TTCTGAATGGGGAAGCTCCTCAAAGCAGATAATGTTGACTCGAGTAAGGG
ATAAAGTGCCAGCAAAGATGGTTTGCGCTGATACGTTGTTTTCAGGCGAT
TATTTTAAAGAGATGATACGCTGTGGCTTACCCTTACAATTAAAAGGTGA
GGGTCGTTATGGATTTATGCATAAATCCTTCATGGAGTTTTTTGTGGCGC
GAATATTTTTATTTAATATAGTCACTGGACATAAAGAAGGGCAAACTCAA
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