mRNA_M-pyrifera_M_contig102422.512.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102422.512.1
Unique NamemRNA_M-pyrifera_M_contig102422.512.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102422.512.1 vs. uniprot
Match: A0A3D0N141_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3D0N141_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.160e-6
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:   58 YAQTSLVPAHHSVYDYLFYQRAVGNIPFYNHEDLPISRGEIVDYLKEIEVSGSLSFSDMETIKAYLVEF 264
            Y+Q  L P    VY +L   +  G IP YN   LP+SR ++ +YL +I  S S+S SD E +K YL+++
Sbjct:   21 YSQQELTPVSDDVYFFLKRMQVAGVIPDYNSSLLPLSRKQVANYLNQINNSSSVSSSDREVLKGYLLDY 89
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102422.512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D0N141_9BACT1.160e-640.58Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102422contigM-pyrifera_M_contig102422:156..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.1
Seed ortholog evalue2.5e-11
Seed eggNOG ortholog1121104.AQXH01000008_gene2397
Hectar predicted targeting categorysignal peptide
EggNOG OGs2BYRY@1,33K7C@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size378
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.5612547-UTR-M-pyrifera_M_contig102422:155..1671622815526.5612547-UTR-M-pyrifera_M_contig102422:155..167Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102422 156..167 +
1692277449.553528-UTR-M-pyrifera_M_contig102422:155..1671692277449.553528-UTR-M-pyrifera_M_contig102422:155..167Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102422 156..167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.5733593-CDS-M-pyrifera_M_contig102422:167..5331622815526.5733593-CDS-M-pyrifera_M_contig102422:167..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102422 168..533 +
1692277449.5656254-CDS-M-pyrifera_M_contig102422:167..5331692277449.5656254-CDS-M-pyrifera_M_contig102422:167..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102422 168..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102422.512.1prot_M-pyrifera_M_contig102422.512.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102422 168..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102422.512.1

>prot_M-pyrifera_M_contig102422.512.1 ID=prot_M-pyrifera_M_contig102422.512.1|Name=mRNA_M-pyrifera_M_contig102422.512.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MLPVLVAFFLSTKYSYAQTSLVPAHHSVYDYLFYQRAVGNIPFYNHEDLP
ISRGEIVDYLKEIEVSGSLSFSDMETIKAYLVEFDQVYLKRTVRRGLFTS
NDPILDRLEYYLLCNDEPLIFS
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mRNA from alignment at M-pyrifera_M_contig102422:156..533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102422.512.1 ID=mRNA_M-pyrifera_M_contig102422.512.1|Name=mRNA_M-pyrifera_M_contig102422.512.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig102422:156..533+ (Macrocystis pyrifera P11B4 male)
AAATACTTATTAATGCTACCAGTTTTGGTAGCATTTTTTTTATCTACGAA
ATATTCATATGCACAAACATCATTGGTTCCTGCTCACCATTCTGTATATG
ATTATTTATTCTATCAAAGAGCTGTAGGAAATATCCCATTTTACAATCAT
GAAGATTTACCAATTTCAAGAGGAGAAATTGTTGATTATTTAAAAGAAAT
AGAAGTTTCGGGCTCGCTAAGCTTTAGTGATATGGAGACAATTAAAGCTT
ATTTAGTAGAGTTTGACCAAGTTTATCTCAAAAGAACCGTAAGAAGGGGG
TTATTTACAAGTAATGATCCAATTTTAGATCGTCTAGAATATTATTTATT
GTGTAATGACGAGCCGCTCATTTTTTCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102422:156..533+

>mRNA_M-pyrifera_M_contig102422.512.1 ID=mRNA_M-pyrifera_M_contig102422.512.1|Name=mRNA_M-pyrifera_M_contig102422.512.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig102422:156..533+ (Macrocystis pyrifera P11B4 male)
ATGCTACCAGTTTTGGTAGCATTTTTTTTATCTACGAAATATTCATATGC
ACAAACATCATTGGTTCCTGCTCACCATTCTGTATATGATTATTTATTCT
ATCAAAGAGCTGTAGGAAATATCCCATTTTACAATCATGAAGATTTACCA
ATTTCAAGAGGAGAAATTGTTGATTATTTAAAAGAAATAGAAGTTTCGGG
CTCGCTAAGCTTTAGTGATATGGAGACAATTAAAGCTTATTTAGTAGAGT
TTGACCAAGTTTATCTCAAAAGAACCGTAAGAAGGGGGTTATTTACAAGT
AATGATCCAATTTTAGATCGTCTAGAATATTATTTATTGTGTAATGACGA
GCCGCTCATTTTTTCAATGCTACCAGTTTTGGTAGCATTTTTTTTATCTA
CGAAATATTCATATGCACAAACATCATTGGTTCCTGCTCACCATTCTGTA
TATGATTATTTATTCTATCAAAGAGCTGTAGGAAATATCCCATTTTACAA
TCATGAAGATTTACCAATTTCAAGAGGAGAAATTGTTGATTATTTAAAAG
AAATAGAAGTTTCGGGCTCGCTAAGCTTTAGTGATATGGAGACAATTAAA
GCTTATTTAGTAGAGTTTGACCAAGTTTATCTCAAAAGAACCGTAAGAAG
GGGGTTATTTACAAGTAATGATCCAATTTTAGATCGTCTAGAATATTATT
TATTGTGTAATGACGAGCCGCTCATTTTTTCA
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