mRNA_M-pyrifera_M_contig102420.511.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102420.511.1
Unique NamemRNA_M-pyrifera_M_contig102420.511.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102420.511.1 vs. uniprot
Match: A0A7I8V701_9ANNE (Cytoplasmic FMR1-interacting protein n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8V701_9ANNE)

HSP 1 Score: 97.1 bits (240), Expect = 2.820e-21
Identity = 45/103 (43.69%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:   13 EHIAALTELNLSDGQPCIEGPSLAVSFSSESDVNFVDRNAYES---RYVQDAFVIGKMRELLARGELFINLLYTYRSCSKALPQVKNAEAPNKAEIHTRNFQV 312
            +++  L E+ L D  PCIE  S+A+ + ++ D NF D +AY +   +Y+++A +  K+ ELL RGE + ++LYT+R CS+ALPQVK+ E PN+AEI+ R  +V
Sbjct:   13 QNVEVLDEMILPDETPCIEASSVAIHYKADLDTNFEDSSAYVTGVAKYIEEATIHAKLNELLERGEEYASMLYTWRCCSRALPQVKSNEQPNRAEIYERTVEV 115
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BLAST of mRNA_M-pyrifera_M_contig102420.511.1 vs. uniprot
Match: A0A6J8A895_MYTCO (Cytoplasmic FMR1-interacting protein n=12 Tax=Mytilus TaxID=6548 RepID=A0A6J8A895_MYTCO)

HSP 1 Score: 96.3 bits (238), Expect = 5.240e-21
Identity = 46/103 (44.66%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:   13 EHIAALTELNLSDGQPCIEGPSLAVSFSSESDVNFVDRNAYES---RYVQDAFVIGKMRELLARGELFINLLYTYRSCSKALPQVKNAEAPNKAEIHTRNFQV 312
            +++  L EL L D QPCIEG SL++ + +  D NF DRNAY +   +Y+++A V   + +LL +G+ F  +LYT+R CS+ALPQVK+ E PN++EI+ +  +V
Sbjct:   13 QNVDVLDELPLPDQQPCIEGLSLSIHYQANFDTNFEDRNAYVTGVAKYIEEATVHADLNKLLEKGQEFAAILYTWRCCSRALPQVKSNEQPNRSEIYNKIVEV 115
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BLAST of mRNA_M-pyrifera_M_contig102420.511.1 vs. uniprot
Match: A0A7J6B8T8_AMEME (Uncharacterized protein n=1 Tax=Ameiurus melas TaxID=219545 RepID=A0A7J6B8T8_AMEME)

HSP 1 Score: 89.7 bits (221), Expect = 1.010e-20
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   16 HIAALTELNLSDGQPCIEGPSLAVSFSSESDVNFVDRNAYES---RYVQDAFVIGKMRELLARGELFINLLYTYRSCSKALPQVKNAEAPNKAEIHTRNFQV 312
            ++  L EL L D QPCIE P  ++ + +  D NF DRNA+ +   RY++ A V   M E+L  G  +  +LYT+RSCS+A+PQVK  E PN+ EI+ +  +V
Sbjct:   13 NVDLLEELPLPDQQPCIEPPPSSIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGHEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEV 114
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BLAST of mRNA_M-pyrifera_M_contig102420.511.1 vs. uniprot
Match: L8H6F1_ACACA (p53 inducible protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H6F1_ACACA)

HSP 1 Score: 94.0 bits (232), Expect = 3.400e-20
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    7 LNEHIAALTELNLSDGQPCIEGPSLAVSFSSESDVNF--VDRNAYESRYVQDAFVIGKMRELLARGELFINLLYTYRSCSKALPQVKNAEAPNKAEIHTRNFQV 312
            + E I AL   +L DGQP IEGP+ AV+F S S   +  VD  A+E+++ ++   + +++E+L RG+ FI L+Y YRSC KA+PQVK  + PNK  I+ + F+V
Sbjct:    4 VEERINALETFDLVDGQPNIEGPTFAVAFESMSTNGYGHVDNKAFETKWTEEIDKVRQLQEILQRGDAFIKLVYAYRSCLKAIPQVKAQDDPNKGTIYEKTFEV 107
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BLAST of mRNA_M-pyrifera_M_contig102420.511.1 vs. uniprot
Match: A0A8B8DAN5_CRAVI (Cytoplasmic FMR1-interacting protein n=3 Tax=Crassostrea TaxID=6564 RepID=A0A8B8DAN5_CRAVI)

HSP 1 Score: 93.6 bits (231), Expect = 4.620e-20
Identity = 45/103 (43.69%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:   13 EHIAALTELNLSDGQPCIEGPSLAVSFSSESDVNFVDRNAYES---RYVQDAFVIGKMRELLARGELFINLLYTYRSCSKALPQVKNAEAPNKAEIHTRNFQV 312
            +++  L EL L D QPCIEG SL++ + +  D NF DR+AY +   +Y+++A V   + +LL  G+ F  +LYT+R CS+ALPQVK+ E PN+ EI+ +  +V
Sbjct:   47 QNVDVLDELPLPDQQPCIEGMSLSIQYQANFDXNFEDRSAYVTGVAKYIEEATVHADLNKLLEEGQEFAAMLYTWRCCSRALPQVKSNEQPNRVEIYNKIVEV 149
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BLAST of mRNA_M-pyrifera_M_contig102420.511.1 vs. uniprot
Match: A0A0L8IGI9_OCTBM (Cytoplasmic FMR1-interacting protein n=3 Tax=Octopus TaxID=6643 RepID=A0A0L8IGI9_OCTBM)

HSP 1 Score: 93.2 bits (230), Expect = 6.300e-20
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:   13 EHIAALTELNLSDGQPCIEGPSLAVSFSSESDVNFVDRNAYES---RYVQDAFVIGKMRELLARGELFINLLYTYRSCSKALPQVKNAEAPNKAEIHTRNFQV 312
            +++  L EL L D QPCIE  SL++ + +  D NF DRNAY S   +Y ++A V   + +LL  G+ +  +LYT+R CS+ALPQVK+ E PN+ EI+T   +V
Sbjct:   14 QNVDVLDELQLPDQQPCIEAQSLSLHYQANFDTNFEDRNAYVSGVAKYKEEAAVHADLNQLLEEGQTYAVMLYTWRCCSRALPQVKSNEQPNRVEIYTTIVEV 116
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BLAST of mRNA_M-pyrifera_M_contig102420.511.1 vs. uniprot
Match: K1QU34_CRAGI (Cytoplasmic FMR1-interacting protein n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QU34_CRAGI)

HSP 1 Score: 92.8 bits (229), Expect = 8.510e-20
Identity = 44/103 (42.72%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:   13 EHIAALTELNLSDGQPCIEGPSLAVSFSSESDVNFVDRNAYES---RYVQDAFVIGKMRELLARGELFINLLYTYRSCSKALPQVKNAEAPNKAEIHTRNFQV 312
            +++  L EL L D QPCIEG SL++ + +  D NF DR+AY +   +Y+++A V   + +LL  G+ +  +LYT+R CS+ALPQVK+ E PN+ EI+ +  +V
Sbjct:   19 QNVDVLDELPLPDQQPCIEGMSLSIQYQANFDTNFEDRSAYVTGVAKYIEEATVHADLNKLLEEGQEYAAMLYTWRCCSRALPQVKSNEQPNRVEIYNKIVEV 121
[Close]
BLAST of mRNA_M-pyrifera_M_contig102420.511.1 vs. uniprot
Match: A0A7J8FF42_ROUAE (Cytoplasmic FMR1 interacting protein 2 n=2 Tax=Amniota TaxID=32524 RepID=A0A7J8FF42_ROUAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.050e-19
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   16 HIAALTELNLSDGQPCIEGPSLAVSFSSESDVNFVDRNAYES---RYVQDAFVIGKMRELLARGELFINLLYTYRSCSKALPQVKNAEAPNKAEIHTRNFQV 312
            ++  L EL L D QPCIE P  ++ + +  D NF DRNA+ +   RY++ A V   M E+L  G  +  +LYT+RSCS+A+PQVK  E PN+ EI+ +  +V
Sbjct:   13 NVDLLEELPLPDQQPCIEPPPSSIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGHEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEV 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig102420.511.1 vs. uniprot
Match: A0A210QW36_MIZYE (Cytoplasmic FMR1-interacting protein n=3 Tax=Pectinidae TaxID=6566 RepID=A0A210QW36_MIZYE)

HSP 1 Score: 92.0 bits (227), Expect = 1.600e-19
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:   13 EHIAALTELNLSDGQPCIEGPSLAVSFSSESDVNFVDRNAYES---RYVQDAFVIGKMRELLARGELFINLLYTYRSCSKALPQVKNAEAPNKAEIHTRNFQV 312
            +++  L EL L D QPCIEG SL++ + +  D NF DRNAY +   RY+++A V  ++ +LL  G+    +LYT+R CS+ALPQVK+ E  N+ EI+ +  +V
Sbjct:   14 QNVDVLDELPLPDQQPCIEGMSLSIHYQANFDTNFEDRNAYVTGVARYIEEATVHAELNKLLEEGQEHAVMLYTWRCCSRALPQVKSNEQANRTEIYQKTVEV 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig102420.511.1 vs. uniprot
Match: D3BK91_POLPP (Component of SCAR regulatory complex n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BK91_POLPP)

HSP 1 Score: 92.0 bits (227), Expect = 1.610e-19
Identity = 47/101 (46.53%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:   10 NEHIAALTELNLSDGQPCIEGPSLAVSFSSESDVNFVDRNAYESRYVQDAFVIGKMRELLARGELFINLLYTYRSCSKALPQVKNAEAPNKAEIHTRNFQV 312
            NE +  L      D Q  IE    +V +SS S   F DRNAY++++ ++   + KM ELL  GE FIN++YTYRSCSKALPQVK +E  NK +I+   F+V
Sbjct:    9 NERVDILESFPFQDDQSLIEELPSSVGYSSYSSNAFFDRNAYDTQWAEEMAAMEKMDELLKAGEHFINMVYTYRSCSKALPQVKTSEQANKQQIYEGTFEV 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102420.511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7I8V701_9ANNE2.820e-2143.69Cytoplasmic FMR1-interacting protein n=1 Tax=Dimor... [more]
A0A6J8A895_MYTCO5.240e-2144.66Cytoplasmic FMR1-interacting protein n=12 Tax=Myti... [more]
A0A7J6B8T8_AMEME1.010e-2043.14Uncharacterized protein n=1 Tax=Ameiurus melas Tax... [more]
L8H6F1_ACACA3.400e-2044.23p53 inducible protein n=1 Tax=Acanthamoeba castell... [more]
A0A8B8DAN5_CRAVI4.620e-2043.69Cytoplasmic FMR1-interacting protein n=3 Tax=Crass... [more]
A0A0L8IGI9_OCTBM6.300e-2044.66Cytoplasmic FMR1-interacting protein n=3 Tax=Octop... [more]
K1QU34_CRAGI8.510e-2042.72Cytoplasmic FMR1-interacting protein n=1 Tax=Crass... [more]
A0A7J8FF42_ROUAE1.050e-1943.14Cytoplasmic FMR1 interacting protein 2 n=2 Tax=Amn... [more]
A0A210QW36_MIZYE1.600e-1943.69Cytoplasmic FMR1-interacting protein n=3 Tax=Pecti... [more]
D3BK91_POLPP1.610e-1946.53Component of SCAR regulatory complex n=1 Tax=Polys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102420contigM-pyrifera_M_contig102420:2..313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score91.3
Seed ortholog evalue2.9e-16
Seed eggNOG ortholog42254.XP_004611595.1
Preferred nameCYFIP2
KEGG koko:K05749
KEGG Pathwayko03013,ko04810,map03013,map04810
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of neurotrophin TRK receptor signaling pathway
EggNOG OGs38MSV@33154,3BC5Z@33208,3CRVJ@33213,3J1QP@40674,488S6@7711,48Y1P@7742,KOG3534@1,KOG3534@2759
COG Functional cat.KLT
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons1
Model size312
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.5187576-CDS-M-pyrifera_M_contig102420:1..3131622815526.5187576-CDS-M-pyrifera_M_contig102420:1..313Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102420 2..313 -
1692277449.5400755-CDS-M-pyrifera_M_contig102420:1..3131692277449.5400755-CDS-M-pyrifera_M_contig102420:1..313Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102420 2..313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102420.511.1prot_M-pyrifera_M_contig102420.511.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102420 2..313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102420.511.1

>prot_M-pyrifera_M_contig102420.511.1 ID=prot_M-pyrifera_M_contig102420.511.1|Name=mRNA_M-pyrifera_M_contig102420.511.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MALNEHIAALTELNLSDGQPCIEGPSLAVSFSSESDVNFVDRNAYESRYV
QDAFVIGKMRELLARGELFINLLYTYRSCSKALPQVKNAEAPNKAEIHTR
NFQV
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mRNA from alignment at M-pyrifera_M_contig102420:2..313-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102420.511.1 ID=mRNA_M-pyrifera_M_contig102420.511.1|Name=mRNA_M-pyrifera_M_contig102420.511.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig102420:2..313- (Macrocystis pyrifera P11B4 male)
ATGGCTTTGAACGAGCACATCGCCGCCCTCACTGAGCTGAACCTCTCAGA
CGGCCAACCGTGCATAGAAGGGCCGAGCTTGGCCGTGAGCTTCTCCTCTG
AATCAGACGTGAACTTCGTGGATCGCAACGCATACGAGTCTCGCTATGTG
CAGGATGCCTTTGTGATCGGGAAGATGCGTGAGCTCCTCGCGAGGGGCGA
GCTCTTCATCAACCTCCTCTACACCTACCGCTCCTGCTCCAAGGCACTAC
CGCAGGTGAAGAACGCAGAGGCCCCCAACAAGGCAGAGATCCACACGAGG
AACTTCCAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102420:2..313-

>mRNA_M-pyrifera_M_contig102420.511.1 ID=mRNA_M-pyrifera_M_contig102420.511.1|Name=mRNA_M-pyrifera_M_contig102420.511.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig102420:2..313- (Macrocystis pyrifera P11B4 male)
ATGGCTTTGAACGAGCACATCGCCGCCCTCACTGAGCTGAACCTCTCAGA
CGGCCAACCGTGCATAGAAGGGCCGAGCTTGGCCGTGAGCTTCTCCTCTG
AATCAGACGTGAACTTCGTGGATCGCAACGCATACGAGTCTCGCTATGTG
CAGGATGCCTTTGTGATCGGGAAGATGCGTGAGCTCCTCGCGAGGGGCGA
GCTCTTCATCAACCTCCTCTACACCTACCGCTCCTGCTCCAAGGCACTAC
CGCAGGTGAAGAACGCAGAGGCCCCCAACAAGGCAGAGATCCACACGAGG
AACTTCCAGGTGATGGCTTTGAACGAGCACATCGCCGCCCTCACTGAGCT
GAACCTCTCAGACGGCCAACCGTGCATAGAAGGGCCGAGCTTGGCCGTGA
GCTTCTCCTCTGAATCAGACGTGAACTTCGTGGATCGCAACGCATACGAG
TCTCGCTATGTGCAGGATGCCTTTGTGATCGGGAAGATGCGTGAGCTCCT
CGCGAGGGGCGAGCTCTTCATCAACCTCCTCTACACCTACCGCTCCTGCT
CCAAGGCACTACCGCAGGTGAAGAACGCAGAGGCCCCCAACAAGGCAGAG
ATCCACACGAGGAACTTCCAGGTG
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