mRNA_M-pyrifera_M_contig102419.510.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102419.510.1
Unique NamemRNA_M-pyrifera_M_contig102419.510.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102419.510.1 vs. uniprot
Match: D7G3H3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3H3_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 4.020e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1
Query:   37 RRVLELGAGMGVCGLIAHKTGAAAVVLTDGDASALKYLNEVRQTN 171
            RRVLELG+GMGV GLIAHKTGAAAVV+TDGD+S +KYL E   TN
Sbjct:   84 RRVLELGSGMGVAGLIAHKTGAAAVVMTDGDSSVIKYLRENISTN 128          
BLAST of mRNA_M-pyrifera_M_contig102419.510.1 vs. uniprot
Match: A0A7S1Y3T4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y3T4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.700e-9
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   31 RARRVLELGAGMGVCGLIAHKTGAAAVVLTDGDASALKYLNEVRQTN 171
            R RRVLELGAG+G+CG++AHK GA  VVLTDGD   LK + +  + N
Sbjct:  100 RNRRVLELGAGLGLCGIVAHKLGAKQVVLTDGDTDTLKEMKQNVEAN 146          
BLAST of mRNA_M-pyrifera_M_contig102419.510.1 vs. uniprot
Match: F0XZE4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZE4_AURAN)

HSP 1 Score: 59.3 bits (142), Expect = 7.530e-9
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 ALLLLRPQHRRARRVLELGAGMGVCGLIAHKTGAAAVVLTDGDASALKYLNEVRQTN 171
            A L  RP+  R RRVLELGAG G+C ++A   GAA VV TDGDA A+ +L  V + N
Sbjct:   91 AYLAARPELCRGRRVLELGAGCGLCSMVASLGGAARVVATDGDAGAVAHLEAVLRAN 147          
BLAST of mRNA_M-pyrifera_M_contig102419.510.1 vs. uniprot
Match: A0A7S4VLM9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VLM9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.590e-8
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    7 LLLRPQHRRARRVLELGAGMGVCGLIAHKTGAAAVVLTDGDASALKYLNEVRQTN 171
            L L P   R + V+ELGAG+G+CG++AHK GA  V+LTDGD+  LK L    ++N
Sbjct:  153 LSLNPFLIRGKSVIELGAGLGLCGILAHKIGAQNVILTDGDSDVLKELRSNVKSN 207          
BLAST of mRNA_M-pyrifera_M_contig102419.510.1 vs. uniprot
Match: A0A7R9WE79_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WE79_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.760e-7
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = 1
Query:   37 RRVLELGAGMGVCGLIAHKTGAAAVVLTDGDASALKYLNEVRQTN 171
            R+VLELGAG+G+CG++AH  GA  VVLTDGD ++L+ +    ++N
Sbjct:  122 RKVLELGAGLGLCGIVAHHLGAERVVLTDGDTNSLREMRRNVESN 166          
BLAST of mRNA_M-pyrifera_M_contig102419.510.1 vs. uniprot
Match: A0A7S3V6Q2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6Q2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.830e-7
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   31 RARRVLELGAGMGVCGLIAHKTGAAAVVLTDGDASALKYL 150
            + + V+ELGAG+G+CG++AHK GA+ V+LTDGD   LK +
Sbjct:   93 QGKTVVELGAGLGLCGIVAHKHGASRVILTDGDTDTLKNM 132          
BLAST of mRNA_M-pyrifera_M_contig102419.510.1 vs. uniprot
Match: A0A7S0RVC0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RVC0_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 1.180e-6
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    7 LLLRPQHRRARRVLELGAGMGVCGLIAHKTGAAAVVLTDGDASALKYLNEVRQTN 171
            L+  PQ    +RVLE+GAG GVCG++A K GA+ VVLTD +   L+ L E    N
Sbjct:  186 LVAHPQLVAGQRVLEIGAGCGVCGILAAKLGASEVVLTDVEGPVLRNLRECMNMN 240          
BLAST of mRNA_M-pyrifera_M_contig102419.510.1 vs. uniprot
Match: A0A8J2T193_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T193_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.540e-6
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    7 LLLRPQHRRARRVLELGAGMGVCGLIAHKTGAAAVVLTDGDASALKYLNE 156
            L +RP   R  RVLELGAG G+ GL+A + GAA V+LTDGDA A++ L +
Sbjct:  297 LTIRPGVVRGCRVLELGAGAGLPGLVAARCGAAEVLLTDGDARAVRLLEK 346          
BLAST of mRNA_M-pyrifera_M_contig102419.510.1 vs. uniprot
Match: A0A7S2PA65_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PA65_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.000e-6
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    7 LLLRPQHRRARRVLELGAGMGVCGLIAHKTGAAAVVLTDGDASALKYL 150
            L  +P     +RVLE+GAG+G+CG+ AH  GA  V++TDGD+ ALK +
Sbjct:   52 LQAQPDILLQKRVLEVGAGLGLCGITAHWLGAKEVIMTDGDSHALKQM 99          
BLAST of mRNA_M-pyrifera_M_contig102419.510.1 vs. uniprot
Match: A0A662WUX6_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUX6_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.950e-6
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   19 PQHRRARRVLELGAGMGVCGLIAHKTGAAAVVLTDGDASALKYLNEVRQTN 171
            P+  R +RVLELGAG G+C ++A K GAA  + TDGDA  ++ L +  + N
Sbjct:  103 PELVRGKRVLELGAGTGICSIVAFKLGAARCLATDGDAEVVELLAKNVEVN 153          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102419.510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3H3_ECTSI4.020e-1377.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1Y3T4_9STRA2.700e-959.57Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
F0XZE4_AURAN7.530e-954.39Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4VLM9_9STRA2.590e-850.91Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7R9WE79_9STRA2.760e-753.33Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A7S3V6Q2_9STRA8.830e-755.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0RVC0_9CHLO1.180e-649.09Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A8J2T193_9STRA1.540e-656.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2PA65_9STRA2.000e-650.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A662WUX6_9STRA4.950e-647.06Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102419contigM-pyrifera_M_contig102419:484..654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue3.9e-07
Seed eggNOG ortholog44056.XP_009033974.1
KEGG koko:K17878,ko:K21804
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2497@1,KOG2497@2759
EC2.1.1.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko03110
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.4772968-CDS-M-pyrifera_M_contig102419:483..6541622815526.4772968-CDS-M-pyrifera_M_contig102419:483..654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102419 484..654 -
1692277449.5254793-CDS-M-pyrifera_M_contig102419:483..6541692277449.5254793-CDS-M-pyrifera_M_contig102419:483..654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102419 484..654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102419.510.1prot_M-pyrifera_M_contig102419.510.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102419 484..654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102419.510.1

>prot_M-pyrifera_M_contig102419.510.1 ID=prot_M-pyrifera_M_contig102419.510.1|Name=mRNA_M-pyrifera_M_contig102419.510.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
ALLLLRPQHRRARRVLELGAGMGVCGLIAHKTGAAAVVLTDGDASALKYL
NEVRQTN
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mRNA from alignment at M-pyrifera_M_contig102419:484..654-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102419.510.1 ID=mRNA_M-pyrifera_M_contig102419.510.1|Name=mRNA_M-pyrifera_M_contig102419.510.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig102419:484..654- (Macrocystis pyrifera P11B4 male)
GCCTTGTTGCTGCTTCGACCACAACATCGGCGAGCCAGACGAGTGCTTGA GCTTGGAGCAGGCATGGGGGTGTGCGGCTTGATCGCTCACAAAACAGGGG CCGCCGCGGTGGTACTGACAGACGGCGACGCTTCCGCCTTGAAATATCTC AACGAGGTGAGGCAAACAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102419:484..654-

>mRNA_M-pyrifera_M_contig102419.510.1 ID=mRNA_M-pyrifera_M_contig102419.510.1|Name=mRNA_M-pyrifera_M_contig102419.510.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig102419:484..654- (Macrocystis pyrifera P11B4 male)
GCCTTGTTGCTGCTTCGACCACAACATCGGCGAGCCAGACGAGTGCTTGA
GCTTGGAGCAGGCATGGGGGTGTGCGGCTTGATCGCTCACAAAACAGGGG
CCGCCGCGGTGGTACTGACAGACGGCGACGCTTCCGCCTTGAAATATCTC
AACGAGGTGAGGCAAACAAACGCCTTGTTGCTGCTTCGACCACAACATCG
GCGAGCCAGACGAGTGCTTGAGCTTGGAGCAGGCATGGGGGTGTGCGGCT
TGATCGCTCACAAAACAGGGGCCGCCGCGGTGGTACTGACAGACGGCGAC
GCTTCCGCCTTGAAATATCTCAACGAGGTGAGGCAAACAAAC
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