mRNA_M-pyrifera_M_contig102413.509.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102413.509.1
Unique NamemRNA_M-pyrifera_M_contig102413.509.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102413.509.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 128 bits (321), Expect = 2.510e-35
Identity = 64/105 (60.95%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:    1 CVTWTLRAEHLAKLRTAHYQVILRVIGFSADFVLT-TPPSRTRRLKTTRCESIETTIRKRPLFFAGAMARQSKERLPNRVIFGTMVGGENPRPGGQFKTWHRRIV 312
            CVTWTL A+H AKLR+AH++V+LRVIGF        T  S  + L+ TRCESIETTIRKR LFFAGA+ RQ + RLP+R++FGT+ GG +P+PGGQ KTW R I 
Sbjct:   14 CVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIA 118
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BLAST of mRNA_M-pyrifera_M_contig102413.509.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC)

HSP 1 Score: 107 bits (266), Expect = 7.220e-27
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:  124 RRLKTTRCESIETTIRKRPLFFAGAMARQSKERLPNRVIFGTMVGGENPRPGGQFKTWHRRIV 312
            + LK TRCESIETTIRKR LFFAG +ARQSK+RLP+RV+FGT+ GGENPRPGGQ KTWHR +V
Sbjct:   18 KALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVV 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig102413.509.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.740e-20
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 CVTWTLRAEHLAKLRTAHYQVILRVIGFSADFVLTTPPSRTRRLKTTRCESIETTIRKRPLFFAGAMARQSKERLPNRVIFGTMVGGENPRPGGQFKTWHRRIV 312
            C TW+  + H   LR+ H++++LRVIG+          S  + LK   C+S+E TIR+R L FAG++ARQ   RLP R++FG + GGE  R GGQ + W + ++
Sbjct:    8 CTTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVL 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig102413.509.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.160e-20
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:    1 CVTWTLRAEHLAKLRTAHYQVILRVIGFSADFVLTTPPSRTRRLKTTRCESIETTIRKRPLFFAGAMARQSKERLPNRVIFGTMVGGENPRPGGQFKTWHRRIV 312
            C+TW+  + H   LR+ H++++LRVIG+          S  + L+   CES+E TIR+R L FAGA+ARQ   RLP R++FG + GGE  R GGQ + W + ++
Sbjct:  140 CMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVL 243
[Close]
BLAST of mRNA_M-pyrifera_M_contig102413.509.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.730e-20
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 CVTWTLRAEHLAKLRTAHYQVILRVIGFSADFVLTTPPSRTRRLKTTRCESIETTIRKRPLFFAGAMARQSKERLPNRVIFGTMVGGENPRPGGQFKTW 297
            C+TW+ R  H   L+T H++++LRVIG+          S  + LK   C+S+E T+R+R L FAGA+ARQ   RLP R++FG +VGGE+P  G   + W
Sbjct:  119 CMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNW 217
[Close]
BLAST of mRNA_M-pyrifera_M_contig102413.509.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.970e-19
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 CVTWTLRAEHLAKLRTAHYQVILRVIGFSADFVLTTPPSRTRRLKTTRCESIETTIRKRPLFFAGAMARQSKERLPNRVIFGTMVGGENPRPGGQFKTW 297
            C+TW+ R  H   L+T H++++LRVIG+          S  + LK   C+S+E T+R+R L FAGA+ARQ   RLP R++FG +VGGE+P  G   + W
Sbjct:  170 CMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNW 268
[Close]
BLAST of mRNA_M-pyrifera_M_contig102413.509.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.170e-19
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 CVTWTLRAEHLAKLRTAHYQVILRVIGFSADFVLTTPPSRTRRLKTTRCESIETTIRKRPLFFAGAMARQSKERLPNRVIFGTMVGGENPRPGGQFKTW 297
            C+TW+ R  H   L+T H++++LRVIG+          S  + LK   C+S+E T+R+R L FAGA+ARQ   RLP R++FG +VGGENP  G   + W
Sbjct:  421 CMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNW 519
[Close]
BLAST of mRNA_M-pyrifera_M_contig102413.509.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.290e-19
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 CVTWTLRAEHLAKLRTAHYQVILRVIGFSADFVLTTPPSRTRRLKTTRCESIETTIRKRPLFFAGAMARQSKERLPNRVIFGTMVGGENPRPGGQFKTW 297
            C+TW+ R  H   L+T H++++LRVIG+          S  + LK   C+S+E T+R+R L FAGA+ARQ   RLP R++FG +VGGENP  G   + W
Sbjct:  119 CMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNW 217
[Close]
BLAST of mRNA_M-pyrifera_M_contig102413.509.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.940e-19
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 CVTWTLRAEHLAKLRTAHYQVILRVIGFSADFVLTTPPSRTRRLKTTRCESIETTIRKRPLFFAGAMARQSKERLPNRVIFGTMVGGENPRPGGQFKTW 297
            C+TW+ R  H   L+T H++++LRVIG+          S  + LK   C+S+E T+R+R L FAGA+ARQ   RLP R++FG +VGGE+P  G   + W
Sbjct:  138 CMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNW 236
[Close]
BLAST of mRNA_M-pyrifera_M_contig102413.509.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.010e-19
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:    1 CVTWTLRAEHLAKLRTAHYQVILRVIGFSADFVLTTPPSRTRRLKTTRCESIETTIRKRPLFFAGAMARQSKERLPNRVIFGTMVGGENPRPGGQFKTWHRRIV 312
            C+TW+  + H   LR+ H++++LRVIG+          S  + LK   C+S+E TIR+R L FAGA+ARQ   RLP R++FG + GGE  R GGQ + W + ++
Sbjct:  492 CMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVL 595
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102413.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AA1A1FE2.510e-3560.95hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
UPI001AA1AADC7.220e-2777.78hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JYE2_9PHAE3.740e-2041.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JAH7_9PHAE4.160e-2042.31Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLH5_9PHAE9.730e-2043.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE1.970e-1943.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA81_9PHAE2.170e-1944.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4M0_9PHAE2.290e-1944.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE2.940e-1943.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE3.010e-1942.31Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102413contigM-pyrifera_M_contig102413:4..318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.4397643-CDS-M-pyrifera_M_contig102413:3..3181622815526.4397643-CDS-M-pyrifera_M_contig102413:3..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102413 4..318 +
1692277449.5078523-CDS-M-pyrifera_M_contig102413:3..3181692277449.5078523-CDS-M-pyrifera_M_contig102413:3..318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102413 4..318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102413.509.1prot_M-pyrifera_M_contig102413.509.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102413 4..318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102413.509.1

>prot_M-pyrifera_M_contig102413.509.1 ID=prot_M-pyrifera_M_contig102413.509.1|Name=mRNA_M-pyrifera_M_contig102413.509.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
CVTWTLRAEHLAKLRTAHYQVILRVIGFSADFVLTTPPSRTRRLKTTRCE
SIETTIRKRPLFFAGAMARQSKERLPNRVIFGTMVGGENPRPGGQFKTWH
RRIV*
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mRNA from alignment at M-pyrifera_M_contig102413:4..318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102413.509.1 ID=mRNA_M-pyrifera_M_contig102413.509.1|Name=mRNA_M-pyrifera_M_contig102413.509.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig102413:4..318+ (Macrocystis pyrifera P11B4 male)
TGCGTGACGTGGACCCTCAGAGCGGAACACCTTGCCAAGCTTCGAACGGC
TCATTATCAAGTCATTTTGCGAGTCATTGGCTTCAGCGCCGACTTCGTAC
TGACCACGCCACCCTCTCGTACGCGAAGGCTTAAGACGACACGTTGCGAG
AGCATCGAAACGACCATCCGTAAACGGCCGCTCTTCTTTGCGGGGGCCAT
GGCACGGCAAAGCAAGGAGAGATTACCCAATCGGGTAATATTCGGGACAA
TGGTTGGCGGGGAGAACCCGAGACCTGGCGGACAGTTCAAGACTTGGCAT
AGACGCATAGTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102413:4..318+

>mRNA_M-pyrifera_M_contig102413.509.1 ID=mRNA_M-pyrifera_M_contig102413.509.1|Name=mRNA_M-pyrifera_M_contig102413.509.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig102413:4..318+ (Macrocystis pyrifera P11B4 male)
TGCGTGACGTGGACCCTCAGAGCGGAACACCTTGCCAAGCTTCGAACGGC
TCATTATCAAGTCATTTTGCGAGTCATTGGCTTCAGCGCCGACTTCGTAC
TGACCACGCCACCCTCTCGTACGCGAAGGCTTAAGACGACACGTTGCGAG
AGCATCGAAACGACCATCCGTAAACGGCCGCTCTTCTTTGCGGGGGCCAT
GGCACGGCAAAGCAAGGAGAGATTACCCAATCGGGTAATATTCGGGACAA
TGGTTGGCGGGGAGAACCCGAGACCTGGCGGACAGTTCAAGACTTGGCAT
AGACGCATAGTCTAATGCGTGACGTGGACCCTCAGAGCGGAACACCTTGC
CAAGCTTCGAACGGCTCATTATCAAGTCATTTTGCGAGTCATTGGCTTCA
GCGCCGACTTCGTACTGACCACGCCACCCTCTCGTACGCGAAGGCTTAAG
ACGACACGTTGCGAGAGCATCGAAACGACCATCCGTAAACGGCCGCTCTT
CTTTGCGGGGGCCATGGCACGGCAAAGCAAGGAGAGATTACCCAATCGGG
TAATATTCGGGACAATGGTTGGCGGGGAGAACCCGAGACCTGGCGGACAG
TTCAAGACTTGGCATAGACGCATAGTCTAA
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