mRNA_M-pyrifera_M_contig10239.508.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10239.508.1
Unique NamemRNA_M-pyrifera_M_contig10239.508.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10239.508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10239contigM-pyrifera_M_contig10239:1450..1905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_000100.1
Exons2
Model size248
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.3767908-CDS-M-pyrifera_M_contig10239:1450..15821622815526.3767908-CDS-M-pyrifera_M_contig10239:1450..1582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10239 1451..1582 -
1692277449.4873476-CDS-M-pyrifera_M_contig10239:1450..15821692277449.4873476-CDS-M-pyrifera_M_contig10239:1450..1582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10239 1451..1582 -
1622815526.3928528-CDS-M-pyrifera_M_contig10239:1791..19051622815526.3928528-CDS-M-pyrifera_M_contig10239:1791..1905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10239 1792..1905 -
1692277449.4988685-CDS-M-pyrifera_M_contig10239:1791..19051692277449.4988685-CDS-M-pyrifera_M_contig10239:1791..1905Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10239 1792..1905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10239.508.1prot_M-pyrifera_M_contig10239.508.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10239 1451..1905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10239.508.1

>prot_M-pyrifera_M_contig10239.508.1 ID=prot_M-pyrifera_M_contig10239.508.1|Name=mRNA_M-pyrifera_M_contig10239.508.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
SSLSLGLIAQALHSSRSQTMKLLSTLLFSVWLCIKASNAFVLLVRAPGAV
PSLTCNAIDDCCVRIKTIHAAPTAVATTTATR
back to top

mRNA from alignment at M-pyrifera_M_contig10239:1450..1905-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10239.508.1 ID=mRNA_M-pyrifera_M_contig10239.508.1|Name=mRNA_M-pyrifera_M_contig10239.508.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig10239:1450..1905- (Macrocystis pyrifera P11B4 male)
AGCTCCTTGTCCCTTGGTCTCATAGCTCAGGCTTTACACAGCAGCAGAAG
CCAAACCATGAAACTCCTGTCTACGCTGCTCTTCTCGGTGTGGCTCTGTA
TCAAGGCCAGCAACGTAAGAGCCGCGAAATAGGTTGACGCGGACGATCTT
GTGTGTGACAGTCAGACAGCATGACATGATCGAAATCAGAAATCAGCACC
CCGAGCAGACATCCTTTGCTCACTGCTGTCTGCGTGGTTTTGACTGCCCT
CTCTCCCTCTCTCTCCCTGACCCGGTGACGCCATGCGCCCCAACCCTACC
ACTCCCCTCTCTTCTCAACCCAGGCCTTCGTGCTCTTGGTGAGGGCACCA
GGGGCGGTGCCCTCTCTGACATGTAACGCGATAGACGACTGCTGTGTACG
GATAAAGACCATACATGCAGCTCCTACTGCTGTTGCCACCACCACCGCCA
CTAGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10239:1450..1905-

>mRNA_M-pyrifera_M_contig10239.508.1 ID=mRNA_M-pyrifera_M_contig10239.508.1|Name=mRNA_M-pyrifera_M_contig10239.508.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig10239:1450..1905- (Macrocystis pyrifera P11B4 male)
AGCTCCTTGTCCCTTGGTCTCATAGCTCAGGCTTTACACAGCAGCAGAAG
CCAAACCATGAAACTCCTGTCTACGCTGCTCTTCTCGGTGTGGCTCTGTA
TCAAGGCCAGCAACAGCTCCTTGTCCCTTGGTCTCATAGCTCAGGCTTTA
CACAGCAGCAGAAGCCAAACCATGAAACTCCTGTCTACGCTGCTCTTCTC
GGTGTGGCTCTGTATCAAGGCCAGCAACGCCTTCGTGCTCTTGGTGAGGG
CACCAGGGGCGGTGCCCTCTCTGACATGTAACGCGATAGACGACTGCTGT
GTACGGATAAAGACCATACATGCAGCTCCTACTGCTGTTGCCACCACCAC
CGCCACTAGAGCCTTCGTGCTCTTGGTGAGGGCACCAGGGGCGGTGCCCT
CTCTGACATGTAACGCGATAGACGACTGCTGTGTACGGATAAAGACCATA
CATGCAGCTCCTACTGCTGTTGCCACCACCACCGCCACTAGA
back to top