mRNA_M-pyrifera_M_contig102335.497.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102335.497.1
Unique NamemRNA_M-pyrifera_M_contig102335.497.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102335.497.1 vs. uniprot
Match: D7FNV2_ECTSI (Rab1B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 6.700e-40
Identity = 76/136 (55.88%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    1 FRTITASYYRGAHGIIVVFDLSDEESFVSVSQWLAEIDKYASESVVKILVGNKKDLEEKRAVATEDARAFAEEHGMSYLETSAKQDENIGEAFKLISREIKKHQMDTEHKAAPAGGDVSIDRGADMGEAGGGGGCC 408
            FRTIT+SYYRGAHGIIVV+D++D+ESF +V QWL EID+YA E+V K+LVGNK DLE KRAV TE+A+AFA+  G+ +LETSAK   N+ +AF +++ +IK  +M ++   AP GG   +     +  AG GGGCC
Sbjct:   70 FRTITSSYYRGAHGIIVVYDVTDKESFNNVKQWLHEIDRYACENVNKLLVGNKSDLEAKRAVTTEEAKAFADTLGIEFLETSAKNASNVEKAFMMMASQIKS-RMKSQPTGAPRGG-TRLTASTQVSGAGSGGGCC 203          
BLAST of mRNA_M-pyrifera_M_contig102335.497.1 vs. uniprot
Match: A0A812YU43_9DINO (YPTC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YU43_9DINO)

HSP 1 Score: 143 bits (360), Expect = 2.040e-39
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:    1 FRTITASYYRGAHGIIVVFDLSDEESFVSVSQWLAEIDKYASESVVKILVGNKKDLEEKRAVATEDARAFAEEHGMSYLETSAKQDENIGEAFKLISREIKKHQMDTEHKAAPAGGDVSIDRGADMGEAGGGGGCC 408
            FRTIT+SYYRGAHGIIVV+D +D+ESF +V +WL EIDKYA+E+V K+LVGNK DLE KR V TE+A+AFAEE G+ +LETSAK   N+ E+F  ++REI+K        A   G   +I  G ++G  GG GGCC
Sbjct:  165 FRTITSSYYRGAHGIIVVYDTTDKESFDNVVEWLNEIDKYATENVNKLLVGNKCDLESKRQVDTEEAKAFAEERGIPFLETSAKNSLNVEESFLTMAREIQKRMQS--QAATSRGKTDTITPGKEIGAGGGSGGCC 298          
BLAST of mRNA_M-pyrifera_M_contig102335.497.1 vs. uniprot
Match: A0A5A8DA02_CAFRO (Uncharacterized protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8DA02_CAFRO)

HSP 1 Score: 138 bits (348), Expect = 1.080e-38
Identity = 75/140 (53.57%), Postives = 98/140 (70.00%), Query Frame = 1
Query:    1 FRTITASYYRGAHGIIVVFDLSDEESFVSVSQWLAEIDKYASESVVKILVGNKKDLEEKRAVATEDARAFAEEHGMSYLETSAKQDENIGEAFKLISREIKKHQMDTEHKAAPAGGDVSIDRGADM----GEAGGGGGCC 408
            FR I +SYYRGAHGIIVV+D++D E+F +V  WL EI+K+ +E V  +LVGNK DLE+KRAV  ++A+AFA+EHGM +LETSAK DE + EAF  ++R+IK+       K A AGGD     G  +    G + GGGGCC
Sbjct:   71 FRVIASSYYRGAHGIIVVYDITDAETFANVKTWLGEIEKHGTEGVKTLLVGNKSDLEDKRAVPYDEAKAFADEHGMPFLETSAKDDEGVEEAFMEMARQIKE-------KLADAGGDGDAGEGVVIDGKRGTSSGGGGCC 203          
BLAST of mRNA_M-pyrifera_M_contig102335.497.1 vs. uniprot
Match: A0A7S1TRZ4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRZ4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.450e-38
Identity = 75/136 (55.15%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    1 FRTITASYYRGAHGIIVVFDLSDEESFVSVSQWLAEIDKYASESVVKILVGNKKDLEEKRAVATEDARAFAEEHGMSYLETSAKQDENIGEAFKLISREIKKHQMDTEHKAAPAGGDVSIDRGADMGEAGGGGGCC 408
            FRTIT+SYYRGAHGIIVV+D++D ESF +V QWL EID+YASE+V K+LVGNK DLE+KR V TE A+ FAE  G+ ++ETSAK   N+ EAF +++ +IK+ +M T+ + A A G+  +  G  +G +GG   CC
Sbjct:   70 FRTITSSYYRGAHGIIVVYDVTDMESFNNVKQWLHEIDRYASENVNKLLVGNKADLEDKRVVTTEAAQEFAESLGIEFIETSAKDRLNVEEAFTMMASQIKR-RMKTQPQPAGARGNTKLSPGQQVGSSGG---CC 201          
BLAST of mRNA_M-pyrifera_M_contig102335.497.1 vs. uniprot
Match: A0A835YQS3_9STRA (Ras related protein PiYpt1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.170e-38
Identity = 77/140 (55.00%), Postives = 99/140 (70.71%), Query Frame = 1
Query:    1 FRTITASYYRGAHGIIVVFDLSDEESFVSVSQWLAEIDKYASESVVKILVGNKKDLEEKRAVATEDARAFAEEHGMSYLETSAKQDENIGEAFKLISREIKKHQMDTEHKAAPAGG---DVSIDRGADMGEAGGGG-GCC 408
            FRTITASYYRGAHGIIVV+D++D ESF +V QWL EI++YA E+V K+LVGNK DLE KRAV TE+ + FA+  G+ +LETSAK  +N+ +AF ++S++IK        K APAGG      +  G  +G  G GG GCC
Sbjct:   70 FRTITASYYRGAHGIIVVYDVTDRESFNNVKQWLTEIERYACENVNKLLVGNKSDLEAKRAVTTEEGKEFADSIGIEFLETSAKNADNVEKAFLMMSQQIKGRM-----KTAPAGGAKGGTRLTAGEQVGGGGAGGSGCC 204          
BLAST of mRNA_M-pyrifera_M_contig102335.497.1 vs. uniprot
Match: A0A3R7BWG4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BWG4_9STRA)

HSP 1 Score: 133 bits (334), Expect = 6.560e-37
Identity = 72/136 (52.94%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 FRTITASYYRGAHGIIVVFDLSDEESFVSVSQWLAEIDKYASESVVKILVGNKKDLEEKRAVATEDARAFAEEHGMSYLETSAKQDENIGEAFKLISREIKKHQMDTEHKAAPAGGDVSIDRGADMGEAGGGGGCC 408
            FRTIT+SYYRGAHGIIVV+D++D+ESF +V QWL EID+YA E+V K+LVGNK DL  KR V+T+ A+ FAE  G+ +LETSAK   N+ +AF +++ +IKK   +    + PA   +S+  G D+G   GG  CC
Sbjct:   46 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVVSKPA---ISLGPGKDVGSKSGG--CC 176          
BLAST of mRNA_M-pyrifera_M_contig102335.497.1 vs. uniprot
Match: A0A0D9WBT6_9ORYZ (Uncharacterized protein n=3 Tax=Oryzeae TaxID=147380 RepID=A0A0D9WBT6_9ORYZ)

HSP 1 Score: 132 bits (333), Expect = 2.560e-36
Identity = 67/102 (65.69%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 FRTITASYYRGAHGIIVVFDLSDEESFVSVSQWLAEIDKYASESVVKILVGNKKDLEEKRAVATEDARAFAEEHGMSYLETSAKQDENIGEAFKLISREIKK 306
            FRTIT+SYYRGAHGII+V+D++D ESF +V QWL+EID+YAS+SV K+LVGNK DL E + V TE+A+AFAE  G+S+LETSAK+  N+ EAF  +S EIKK
Sbjct:   70 FRTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLSEIDRYASDSVCKLLVGNKCDLVESKVVDTEEAKAFAESLGISFLETSAKESINVEEAFLTMSSEIKK 171          
BLAST of mRNA_M-pyrifera_M_contig102335.497.1 vs. uniprot
Match: D8RP83_SELML (Rab family GTPase n=9 Tax=Embryophyta TaxID=3193 RepID=D8RP83_SELML)

HSP 1 Score: 130 bits (328), Expect = 1.100e-35
Identity = 70/136 (51.47%), Postives = 96/136 (70.59%), Query Frame = 1
Query:    1 FRTITASYYRGAHGIIVVFDLSDEESFVSVSQWLAEIDKYASESVVKILVGNKKDLEEKRAVATEDARAFAEEHGMSYLETSAKQDENIGEAFKLISREIKKHQMDTEHKAAPAGGDVSIDRGADMGEAGGGGGCC 408
            FRTIT+SYYRGAHGIIVV+D++D+ESF +V QWL EID+YASE+V K+LVGNK DL  K+ V T+ A+AFA+E G+ +LETSAK   N+ +AF  ++ EIK          +    +VS+++G  + + GG   CC
Sbjct:   70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKADLTAKKVVDTQTAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPAMNSNKPNNVSLNKGQPLNQKGG---CC 202          
BLAST of mRNA_M-pyrifera_M_contig102335.497.1 vs. uniprot
Match: A0A067C976_SAPPC (Ras-like GTP-binding protein YPT1 n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C976_SAPPC)

HSP 1 Score: 130 bits (327), Expect = 1.480e-35
Identity = 70/136 (51.47%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    1 FRTITASYYRGAHGIIVVFDLSDEESFVSVSQWLAEIDKYASESVVKILVGNKKDLEEKRAVATEDARAFAEEHGMSYLETSAKQDENIGEAFKLISREIKKHQMDTEHKAAPAGGDVSIDRGADMGEAGGGGGCC 408
            FRTIT+SYYRGAHGIIVV+D++D+ESF +V QWL EID+YA E+V K+LVGNK DL  KR V+T+ A+ FA+  G+ +LETSAK   N+ +AF +++ +IKK       ++ PA   +S+  G ++  +G  GGCC
Sbjct:   70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKDFADSLGIEFLETSAKNAANVEKAFMMMAAQIKKRMASAPMQSKPA---ISLQPGQNV--SGKSGGCC 200          
BLAST of mRNA_M-pyrifera_M_contig102335.497.1 vs. uniprot
Match: K3W769_GLOUD (Uncharacterized protein n=4 Tax=Oomycota TaxID=4762 RepID=K3W769_GLOUD)

HSP 1 Score: 130 bits (327), Expect = 1.520e-35
Identity = 70/136 (51.47%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 FRTITASYYRGAHGIIVVFDLSDEESFVSVSQWLAEIDKYASESVVKILVGNKKDLEEKRAVATEDARAFAEEHGMSYLETSAKQDENIGEAFKLISREIKKHQMDTEHKAAPAGGDVSIDRGADMGEAGGGGGCC 408
            FRTIT+SYYRGAHGIIVV+D++D+ESF +V QWL EID+YA E+V K+LVGNK DL  KR V+TE A+ FAE  G+ +LETSAK   N+ +AF +++ +IKK   +      P    + +++G ++ +  GGG CC
Sbjct:   70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTEAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPTAPKPT---LKLNQGTNV-QQNGGGKCC 201          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102335.497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNV2_ECTSI6.700e-4055.88Rab1B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A812YU43_9DINO2.040e-3957.35YPTC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A5A8DA02_CAFRO1.080e-3853.57Uncharacterized protein n=2 Tax=Sar TaxID=2698737 ... [more]
A0A7S1TRZ4_9STRA1.450e-3855.15Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A835YQS3_9STRA3.170e-3855.00Ras related protein PiYpt1 n=1 Tax=Tribonema minus... [more]
A0A3R7BWG4_9STRA6.560e-3752.94Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A0D9WBT6_9ORYZ2.560e-3665.69Uncharacterized protein n=3 Tax=Oryzeae TaxID=1473... [more]
D8RP83_SELML1.100e-3551.47Rab family GTPase n=9 Tax=Embryophyta TaxID=3193 R... [more]
A0A067C976_SAPPC1.480e-3551.47Ras-like GTP-binding protein YPT1 n=11 Tax=Saprole... [more]
K3W769_GLOUD1.520e-3551.47Uncharacterized protein n=4 Tax=Oomycota TaxID=476... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102335contigM-pyrifera_M_contig102335:71..481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue2.9e-32
Seed eggNOG ortholog2880.D7FNV2
KEGG koko:K07874
KEGG Pathwayko05134,map05134
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0084@1,KOG0084@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.7174487-CDS-M-pyrifera_M_contig102335:70..4811622815525.7174487-CDS-M-pyrifera_M_contig102335:70..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102335 71..481 -
1692277449.2190254-CDS-M-pyrifera_M_contig102335:70..4811692277449.2190254-CDS-M-pyrifera_M_contig102335:70..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102335 71..481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102335.497.1prot_M-pyrifera_M_contig102335.497.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102335 71..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102335.497.1

>prot_M-pyrifera_M_contig102335.497.1 ID=prot_M-pyrifera_M_contig102335.497.1|Name=mRNA_M-pyrifera_M_contig102335.497.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
FRTITASYYRGAHGIIVVFDLSDEESFVSVSQWLAEIDKYASESVVKILV
GNKKDLEEKRAVATEDARAFAEEHGMSYLETSAKQDENIGEAFKLISREI
KKHQMDTEHKAAPAGGDVSIDRGADMGEAGGGGGCC*
back to top

mRNA from alignment at M-pyrifera_M_contig102335:71..481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102335.497.1 ID=mRNA_M-pyrifera_M_contig102335.497.1|Name=mRNA_M-pyrifera_M_contig102335.497.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig102335:71..481- (Macrocystis pyrifera P11B4 male)
TTCCGCACGATTACTGCGAGCTACTATAGGGGCGCGCACGGTATTATAGT GGTGTTTGACCTGAGCGACGAGGAGTCTTTTGTGAGTGTGAGTCAGTGGT TGGCTGAGATTGACAAGTACGCTAGCGAGAGCGTGGTGAAGATTCTGGTG GGGAACAAGAAGGACCTGGAGGAGAAGAGAGCCGTTGCGACCGAGGACGC ACGTGCGTTCGCCGAGGAGCACGGGATGAGCTACCTCGAAACTTCTGCAA AACAGGACGAGAACATTGGTGAGGCCTTCAAGCTCATTTCCCGCGAAATC AAAAAGCACCAGATGGACACGGAACACAAGGCAGCCCCAGCAGGGGGGGA TGTCTCCATCGACAGGGGCGCAGATATGGGGGAGGCGGGAGGGGGTGGAG GCTGTTGCTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig102335:71..481-

>mRNA_M-pyrifera_M_contig102335.497.1 ID=mRNA_M-pyrifera_M_contig102335.497.1|Name=mRNA_M-pyrifera_M_contig102335.497.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig102335:71..481- (Macrocystis pyrifera P11B4 male)
TTCCGCACGATTACTGCGAGCTACTATAGGGGCGCGCACGGTATTATAGT
GGTGTTTGACCTGAGCGACGAGGAGTCTTTTGTGAGTGTGAGTCAGTGGT
TGGCTGAGATTGACAAGTACGCTAGCGAGAGCGTGGTGAAGATTCTGGTG
GGGAACAAGAAGGACCTGGAGGAGAAGAGAGCCGTTGCGACCGAGGACGC
ACGTGCGTTCGCCGAGGAGCACGGGATGAGCTACCTCGAAACTTCTGCAA
AACAGGACGAGAACATTGGTGAGGCCTTCAAGCTCATTTCCCGCGAAATC
AAAAAGCACCAGATGGACACGGAACACAAGGCAGCCCCAGCAGGGGGGGA
TGTCTCCATCGACAGGGGCGCAGATATGGGGGAGGCGGGAGGGGGTGGAG
GCTGTTGCTAATTCCGCACGATTACTGCGAGCTACTATAGGGGCGCGCAC
GGTATTATAGTGGTGTTTGACCTGAGCGACGAGGAGTCTTTTGTGAGTGT
GAGTCAGTGGTTGGCTGAGATTGACAAGTACGCTAGCGAGAGCGTGGTGA
AGATTCTGGTGGGGAACAAGAAGGACCTGGAGGAGAAGAGAGCCGTTGCG
ACCGAGGACGCACGTGCGTTCGCCGAGGAGCACGGGATGAGCTACCTCGA
AACTTCTGCAAAACAGGACGAGAACATTGGTGAGGCCTTCAAGCTCATTT
CCCGCGAAATCAAAAAGCACCAGATGGACACGGAACACAAGGCAGCCCCA
GCAGGGGGGGATGTCTCCATCGACAGGGGCGCAGATATGGGGGAGGCGGG
AGGGGGTGGAGGCTGTTGCTAA
back to top