mRNA_M-pyrifera_M_contig102324.493.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102324.493.1
Unique NamemRNA_M-pyrifera_M_contig102324.493.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102324.493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102324contigM-pyrifera_M_contig102324:219..618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.4665523-CDS-M-pyrifera_M_contig102324:218..3081622815525.4665523-CDS-M-pyrifera_M_contig102324:218..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102324 219..308 -
1692277449.1170774-CDS-M-pyrifera_M_contig102324:218..3081692277449.1170774-CDS-M-pyrifera_M_contig102324:218..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102324 219..308 -
1622815525.4814622-CDS-M-pyrifera_M_contig102324:381..6181622815525.4814622-CDS-M-pyrifera_M_contig102324:381..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102324 382..618 -
1692277449.1308217-CDS-M-pyrifera_M_contig102324:381..6181692277449.1308217-CDS-M-pyrifera_M_contig102324:381..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102324 382..618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102324.493.1prot_M-pyrifera_M_contig102324.493.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102324 219..618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102324.493.1

>prot_M-pyrifera_M_contig102324.493.1 ID=prot_M-pyrifera_M_contig102324.493.1|Name=mRNA_M-pyrifera_M_contig102324.493.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MLNYHVQQEEDNRRSFIRVLCATATISRSREVGSSFVADWFSNSSLIRAA
KDYLLVLAAECWLTNDSDVKVLHSVLSLKQAQLDCLSRMLENNSEYPVIA
LRYLFSSEL
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mRNA from alignment at M-pyrifera_M_contig102324:219..618-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102324.493.1 ID=mRNA_M-pyrifera_M_contig102324.493.1|Name=mRNA_M-pyrifera_M_contig102324.493.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=400bp|location=Sequence derived from alignment at M-pyrifera_M_contig102324:219..618- (Macrocystis pyrifera P11B4 male)
ATGCTCAACTACCACGTGCAGCAAGAGGAGGACAACAGGAGGAGCTTTAT
CAGAGTGCTCTGCGCTACCGCAACTATCAGCAGGAGCCGGGAGGTTGGCT
CATCCTTCGTTGCTGACTGGTTCTCCAACTCAAGCCTCATTCGTGCTGCC
AAGGACTACCTCCTGGTACTTGCAGCAGAATGCTGGCTCACAAACGACTC
CGACGTGAAGGTTCTCCACAGCGTGCTCTCCCTGAAGGTATGTCGCTTGC
GTACATCCGATGCAGAAAGTGATGTATACTGACACTGAGCAGCTGAAAAC
AGTTCATCAGCAAGCTCAGCTCGACTGCCTCTCCCGAATGCTGGAGAACA
ATTCAGAATACCCAGTGATTGCGCTGCGGTACTTGTTCTCCAGTGAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102324:219..618-

>mRNA_M-pyrifera_M_contig102324.493.1 ID=mRNA_M-pyrifera_M_contig102324.493.1|Name=mRNA_M-pyrifera_M_contig102324.493.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig102324:219..618- (Macrocystis pyrifera P11B4 male)
ATGCTCAACTACCACGTGCAGCAAGAGGAGGACAACAGGAGGAGCTTTAT
CAGAGTGCTCTGCGCTACCGCAACTATCAGCAGGAGCCGGGAGGTTGGCT
CATCCTTCGTTGCTGACTGGTTCTCCAACTCAAGCCTCATTCGTGCTGCC
AAGGACTACCTCCTGGTACTTGCAGCAGAATGCTGGCTCACAAACGACTC
CGACGTGAAGGTTCTCCACAGCGTGCTCTCCCTGAAGATGCTCAACTACC
ACGTGCAGCAAGAGGAGGACAACAGGAGGAGCTTTATCAGAGTGCTCTGC
GCTACCGCAACTATCAGCAGGAGCCGGGAGGTTGGCTCATCCTTCGTTGC
TGACTGGTTCTCCAACTCAAGCCTCATTCGTGCTGCCAAGGACTACCTCC
TGGTACTTGCAGCAGAATGCTGGCTCACAAACGACTCCGACGTGAAGGTT
CTCCACAGCGTGCTCTCCCTGAAGCAAGCTCAGCTCGACTGCCTCTCCCG
AATGCTGGAGAACAATTCAGAATACCCAGTGATTGCGCTGCGGTACTTGT
TCTCCAGTGAGCTGCAAGCTCAGCTCGACTGCCTCTCCCGAATGCTGGAG
AACAATTCAGAATACCCAGTGATTGCGCTGCGGTACTTGTTCTCCAGTGA
GCTG
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