mRNA_M-pyrifera_M_contig102311.492.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102311.492.1
Unique NamemRNA_M-pyrifera_M_contig102311.492.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102311.492.1 vs. uniprot
Match: A0A0L0DA18_THETB (Pyr_redox_2 domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DA18_THETB)

HSP 1 Score: 135 bits (340), Expect = 5.080e-34
Identity = 79/176 (44.89%), Postives = 106/176 (60.23%), Query Frame = 1 
Query:    4 LAYVGGGISGIEAAKISLASGKELVIIERLPFLGGIWCTSANKESRIQVDPISFRPIEDEAPVKTPDAEDPFDSFYPNRQEVLARLGHDVTLHGLKERTLFSTEVTRFTERPEGGVEVFMRSAGADGSPAGEEFSAVFKELHVRTGSLTSHNSNEFRLANED-AFKGTVARGIGGD 528
            +A VGGG+SG EAA++  A G  ++++E+    GG+W T+AN  SR+QVDP+SFRP+ D +P+   D  DPF SFY +R +VL +L  D+    L  RT+F   V  F    +G V V +  A  DG+ A     AVF ELH+RTGSLT H      L  +D +F G VARGI  D
Sbjct:   55 VAIVGGGLSGCEAARLHAAEGASVIVLEKRIAYGGVWATTANTASRVQVDPVSFRPLHDSSPLPDDDESDPFGSFYRSRADVLDQLASDIEGANLIARTVFGVHVESFDHTDDGKVAVTV--AVDDGTCA----IAVFDELHIRTGSLTDHVGGATALGLDDVSFGGKVARGIADD 224
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BLAST of mRNA_M-pyrifera_M_contig102311.492.1 vs. uniprot
Match: A0A7S4NSR9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NSR9_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 5.490e-23
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:   76 VIIERLPFLGGIWCTSANKESRIQVDPISFRPIEDEAPVKTPDAEDPFDSFYPNRQEVLARLGHDVTLHGLKERTLFSTEVTRF 327
            +I+E  PFLGGIW TSAN ESRIQVDP+SFRPI+D +P+   D   PFD+ YP+RQ+VL R+ + V  H L E+T+F+  V  F
Sbjct:   10 IILELSPFLGGIWQTSANHESRIQVDPVSFRPIDDTSPITPADPSLPFDTIYPDRQKVLERMAYAVKTHKLHEKTVFNVAVLGF 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102311.492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0L0DA18_THETB5.080e-3444.89Pyr_redox_2 domain-containing protein n=1 Tax=Thec... [more]
A0A7S4NSR9_9EUKA5.490e-2355.95Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102311contigM-pyrifera_M_contig102311:133..660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.9
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog63737.Npun_R2075
Preferred namelcyB
KEGG rclassRC00011,RC01004,RC01964
KEGG koko:K03388,ko:K06443
KEGG ReactionR03824,R04540,R04801,R05341,R06962,R07856,R11928,R11931,R11943,R11944
KEGG Pathwayko00680,ko00906,ko01100,ko01110,ko01120,ko01200,map00680,map00906,map01100,map01110,map01120,map01200
KEGG ModuleM00097,M00356,M00357,M00563,M00567
Hectar predicted targeting categoryother localisation
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,COG2072@2
EC1.8.7.3,1.8.98.4,1.8.98.5,1.8.98.6,5.5.1.19
COG Functional cat.P
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.4287534-CDS-M-pyrifera_M_contig102311:132..6601622815525.4287534-CDS-M-pyrifera_M_contig102311:132..660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102311 133..660 +
1692277449.1062117-CDS-M-pyrifera_M_contig102311:132..6601692277449.1062117-CDS-M-pyrifera_M_contig102311:132..660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102311 133..660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102311.492.1prot_M-pyrifera_M_contig102311.492.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102311 133..660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102311.492.1

>prot_M-pyrifera_M_contig102311.492.1 ID=prot_M-pyrifera_M_contig102311.492.1|Name=mRNA_M-pyrifera_M_contig102311.492.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
KLAYVGGGISGIEAAKISLASGKELVIIERLPFLGGIWCTSANKESRIQV
DPISFRPIEDEAPVKTPDAEDPFDSFYPNRQEVLARLGHDVTLHGLKERT
LFSTEVTRFTERPEGGVEVFMRSAGADGSPAGEEFSAVFKELHVRTGSLT
SHNSNEFRLANEDAFKGTVARGIGGD
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mRNA from alignment at M-pyrifera_M_contig102311:133..660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102311.492.1 ID=mRNA_M-pyrifera_M_contig102311.492.1|Name=mRNA_M-pyrifera_M_contig102311.492.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig102311:133..660+ (Macrocystis pyrifera P11B4 male)
AAGCTGGCCTACGTGGGAGGAGGCATCAGTGGGATTGAGGCGGCGAAGAT
CTCTCTGGCCAGTGGCAAGGAGCTGGTGATCATCGAGCGCCTGCCGTTCC
TTGGCGGAATCTGGTGTACGTCAGCAAACAAGGAGAGCCGCATTCAAGTG
GACCCCATCTCATTCCGGCCCATTGAGGACGAGGCGCCTGTGAAGACGCC
GGACGCTGAGGATCCCTTTGACTCCTTCTACCCCAACCGCCAGGAGGTGC
TGGCTCGCCTCGGCCACGACGTCACTCTGCATGGCCTCAAGGAGCGCACG
CTCTTCTCCACCGAGGTGACGAGGTTCACAGAGAGGCCCGAGGGTGGCGT
CGAGGTGTTCATGAGGAGCGCCGGCGCAGACGGAAGCCCCGCAGGAGAGG
AGTTCTCGGCAGTGTTCAAGGAGCTCCACGTGAGGACTGGCTCGCTCACC
AGCCACAACAGCAACGAGTTCCGTCTGGCCAACGAGGACGCTTTCAAGGG
TACTGTGGCCAGGGGCATTGGTGGCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102311:133..660+

>mRNA_M-pyrifera_M_contig102311.492.1 ID=mRNA_M-pyrifera_M_contig102311.492.1|Name=mRNA_M-pyrifera_M_contig102311.492.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig102311:133..660+ (Macrocystis pyrifera P11B4 male)
AAGCTGGCCTACGTGGGAGGAGGCATCAGTGGGATTGAGGCGGCGAAGAT
CTCTCTGGCCAGTGGCAAGGAGCTGGTGATCATCGAGCGCCTGCCGTTCC
TTGGCGGAATCTGGTGTACGTCAGCAAACAAGGAGAGCCGCATTCAAGTG
GACCCCATCTCATTCCGGCCCATTGAGGACGAGGCGCCTGTGAAGACGCC
GGACGCTGAGGATCCCTTTGACTCCTTCTACCCCAACCGCCAGGAGGTGC
TGGCTCGCCTCGGCCACGACGTCACTCTGCATGGCCTCAAGGAGCGCACG
CTCTTCTCCACCGAGGTGACGAGGTTCACAGAGAGGCCCGAGGGTGGCGT
CGAGGTGTTCATGAGGAGCGCCGGCGCAGACGGAAGCCCCGCAGGAGAGG
AGTTCTCGGCAGTGTTCAAGGAGCTCCACGTGAGGACTGGCTCGCTCACC
AGCCACAACAGCAACGAGTTCCGTCTGGCCAACGAGGACGCTTTCAAGGG
TACTGTGGCCAGGGGCATTGGTGGCGACAAGCTGGCCTACGTGGGAGGAG
GCATCAGTGGGATTGAGGCGGCGAAGATCTCTCTGGCCAGTGGCAAGGAG
CTGGTGATCATCGAGCGCCTGCCGTTCCTTGGCGGAATCTGGTGTACGTC
AGCAAACAAGGAGAGCCGCATTCAAGTGGACCCCATCTCATTCCGGCCCA
TTGAGGACGAGGCGCCTGTGAAGACGCCGGACGCTGAGGATCCCTTTGAC
TCCTTCTACCCCAACCGCCAGGAGGTGCTGGCTCGCCTCGGCCACGACGT
CACTCTGCATGGCCTCAAGGAGCGCACGCTCTTCTCCACCGAGGTGACGA
GGTTCACAGAGAGGCCCGAGGGTGGCGTCGAGGTGTTCATGAGGAGCGCC
GGCGCAGACGGAAGCCCCGCAGGAGAGGAGTTCTCGGCAGTGTTCAAGGA
GCTCCACGTGAGGACTGGCTCGCTCACCAGCCACAACAGCAACGAGTTCC
GTCTGGCCAACGAGGACGCTTTCAAGGGTACTGTGGCCAGGGGCATTGGT
GGCGAC
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