mRNA_M-pyrifera_M_contig102307.490.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102307.490.1
Unique NamemRNA_M-pyrifera_M_contig102307.490.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102307.490.1 vs. uniprot
Match: A0A453EZX4_AEGTS (Helicase ATP-binding domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453EZX4_AEGTS)

HSP 1 Score: 132 bits (333), Expect = 4.100e-37
Identity = 64/125 (51.20%), Postives = 90/125 (72.00%), Query Frame = 1
Query:    1 PKMAVLGSRAQLCIHDDVSKIRGNAQHHACRKLVSKQKCKFHKRVQDY-KSNSDFTDAVLDIEELAGLGKSKGVCPYYLTRELQDNAELVLIPYNYLIDPQTRQSLH-VDLEGSVLIFDEAHNMV 369
            PKMAVLGSR Q+CIH++VSK+RG AQ++ C  L  K+ C+ +  V DY K+N++      DIE+L  +G++KG CPYY++REL  + +++  PYNYLIDP  R+SL  +    +VLIFDEAHN+V
Sbjct:   42 PKMAVLGSREQMCIHEEVSKLRGKAQNNGCHYLCKKRLCRHNNIVTDYMKNNTELGSEPFDIEDLVNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLTGISWNNAVLIFDEAHNLV 166          
BLAST of mRNA_M-pyrifera_M_contig102307.490.1 vs. uniprot
Match: A0A7S2X2K7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2X2K7_9CHLO)

HSP 1 Score: 141 bits (355), Expect = 1.480e-36
Identity = 71/124 (57.26%), Postives = 94/124 (75.81%), Query Frame = 1
Query:    1 PKMAVLGSRAQLCIHDDVSKIRGNAQHHACRKLVSKQKCKFHKRVQDYK-SNSDFTDAVLDIEELAGLGKSKGVCPYYLTRELQDNAELVLIPYNYLIDPQTRQSL-HVDLEGSVLIFDEAHNM 366
            PK  VLGSR Q+CIH  VSKI+GNAQ+ ACR LV+KQ CK H  VQ++  +N      +LDIE+L  LG+S G CP+Y++RELQ +AELV++PYNYL+DP+ R+S+ ++D    VLIFDEAHN+
Sbjct:  118 PKTCVLGSRQQMCIHPTVSKIQGNAQNQACRALVAKQACKAHNSVQEWLLANKQAATQLLDIEDLVRLGRSGGGCPFYISRELQADAELVILPYNYLVDPKIRKSMTNLDWSKCVLIFDEAHNL 241          
BLAST of mRNA_M-pyrifera_M_contig102307.490.1 vs. uniprot
Match: UPI001B7E4DB3 (regulator of telomere elongation helicase 1 homolog isoform X1 n=2 Tax=Juglans microcarpa x Juglans regia TaxID=2249226 RepID=UPI001B7E4DB3)

HSP 1 Score: 137 bits (346), Expect = 1.720e-35
Identity = 67/123 (54.47%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 PKMAVLGSRAQLCIHDDVSKIRGNAQHHACRKLVSKQKCKFHKRVQDY-KSNSDFTDAVLDIEELAGLGKSKGVCPYYLTRELQDNAELVLIPYNYLIDPQTRQSLHVDLEGSVLIFDEAHNM 366
            PKM VLGSR QLCIHD+VS +RG  Q ++C  L  K+KC  H RV +Y K N    D  +DIE+L  +G+  G CPYY++REL   A++   PYNYLIDP  R+SL VD   S+LIFDEAHN+
Sbjct:  121 PKMVVLGSREQLCIHDEVSSLRGKTQTNSCHSLCRKRKCSHHSRVAEYMKKNPHLGDEPIDIEDLVNVGRRFGPCPYYVSRELHRIADIFFAPYNYLIDPGNRKSLKVDWNNSILIFDEAHNL 243          
BLAST of mRNA_M-pyrifera_M_contig102307.490.1 vs. uniprot
Match: A0A6P8HMK1_ACTTE (Regulator of telomere elongation helicase 1 homolog n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HMK1_ACTTE)

HSP 1 Score: 137 bits (345), Expect = 4.030e-35
Identity = 62/123 (50.41%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 PKMAVLGSRAQLCIHDDVSKIRGN-AQHHACRKLVSKQKCKFHKRVQDYKSNSDFTDAVLDIEELAGLGKSKGVCPYYLTRELQDNAELVLIPYNYLIDPQTRQSLHVDLEGSVLIFDEAHNM 366
            P+++++GSR QLCIH DV K   N A+ H CR  V+ + C F+  ++  KSN DFT ++LDIE+L  LG+   VCPYY+ REL+ NAE+V +PYNY++DP++R++ ++D+ GS++IFDEAHN+
Sbjct:  139 PRVSIIGSREQLCIHPDVLKQENNSAKVHMCRAKVTARTCPFYNNLEVNKSNPDFTSSILDIEDLVKLGQKHKVCPYYMARELKTNAEIVFMPYNYMLDPKSRKAHNLDISGSIVIFDEAHNV 261          
BLAST of mRNA_M-pyrifera_M_contig102307.490.1 vs. uniprot
Match: A0A2I4DXZ7_JUGRE (regulator of telomere elongation helicase 1 homolog isoform X1 n=11 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4DXZ7_JUGRE)

HSP 1 Score: 137 bits (344), Expect = 5.490e-35
Identity = 67/123 (54.47%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 PKMAVLGSRAQLCIHDDVSKIRGNAQHHACRKLVSKQKCKFHKRVQDY-KSNSDFTDAVLDIEELAGLGKSKGVCPYYLTRELQDNAELVLIPYNYLIDPQTRQSLHVDLEGSVLIFDEAHNM 366
            PKM VLGSR QLCIHD+VS +RG  Q ++C  L  K+KC  H RV +Y K N    D  +DIE+L  +G+  G CPYY++REL   A++   PYNYLIDP  R+SL VD   S+LIFDEAHN+
Sbjct:  121 PKMVVLGSREQLCIHDEVSSLRGKTQTNSCHSLCRKRKCGHHSRVAEYMKKNPHLGDEPIDIEDLVNVGRRFGPCPYYVSRELHRIADIFFAPYNYLIDPGNRKSLKVDWNNSILIFDEAHNL 243          
BLAST of mRNA_M-pyrifera_M_contig102307.490.1 vs. uniprot
Match: A0A835IFC1_9MAGN (Helicase ATP-binding domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IFC1_9MAGN)

HSP 1 Score: 136 bits (343), Expect = 7.540e-35
Identity = 66/123 (53.66%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 PKMAVLGSRAQLCIHDDVSKIRGNAQHHACRKLVSKQKCKFHKRVQDY-KSNSDFTDAVLDIEELAGLGKSKGVCPYYLTRELQDNAELVLIPYNYLIDPQTRQSLHVDLEGSVLIFDEAHNM 366
            PKM V+GSR QLCIHDDV  +RG AQ +AC  +  K+KC  H  V  + K+NS+  D  +DIE+L  +G+S+G CPYYL+REL    +++  PYNYLID   R+SL++  E SVLIFDEAHN+
Sbjct:  103 PKMVVIGSREQLCIHDDVKNLRGRAQTNACHFVCKKRKCSHHSSVSGFVKNNSNLGDDPIDIEDLVNIGRSQGPCPYYLSRELHKVVDILFAPYNYLIDRGNRKSLNIKWEDSVLIFDEAHNL 225          
BLAST of mRNA_M-pyrifera_M_contig102307.490.1 vs. uniprot
Match: A0A067EJ33_CITSI (Uncharacterized protein n=2 Tax=Citrus TaxID=2706 RepID=A0A067EJ33_CITSI)

HSP 1 Score: 135 bits (341), Expect = 1.240e-34
Identity = 67/126 (53.17%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    1 PKMAVLGSRAQLCIHDDVSKIRGNAQHHACRKLVSK---QKCKFHKRVQDY-KSNSDFTDAVLDIEELAGLGKSKGVCPYYLTRELQDNAELVLIPYNYLIDPQTRQSLHVDLEGSVLIFDEAHNM 366
            PKM +LGSR QLCIH +VS +RG+AQ++ACR L  K   ++C  H RV DY K+N    D  +DIE+L  +G++ G CPY++TRELQ   ++V  PYNYLIDP  R+ L V+ + S+LIFDEAHN+
Sbjct:  121 PKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNL 246          
BLAST of mRNA_M-pyrifera_M_contig102307.490.1 vs. uniprot
Match: UPI000D3045CB (regulator of telomere elongation helicase 1-like n=1 Tax=Maylandia zebra TaxID=106582 RepID=UPI000D3045CB)

HSP 1 Score: 129 bits (323), Expect = 1.540e-34
Identity = 57/124 (45.97%), Postives = 91/124 (73.39%), Query Frame = 1
Query:    1 PKMAVLGSRAQLCIHDDVSKIRGN-AQHHACRKLVSKQKCKFHKRVQDYKSNSDFTDAVLDIEELAGLGKSKGVCPYYLTRELQDNAELVLIPYNYLIDPQTRQSLHVDLEGSVLIFDEAHNMV 369
            PK+ V+GSR QLCI+ DV   + N  + H CR  VS + C ++K++++  ++ DF  ++LD+E+L   G  + VCPYYL+R L+  A+++ +PYNYL+DP++R++L +DL G+V+IFDEAHN+V
Sbjct:  130 PKVCVMGSREQLCINQDVMCQKSNHVKVHMCRGKVSTRSCVYYKKLEEKSTDRDFVSSILDVEDLVQFGNKQRVCPYYLSRSLKQEADVIFMPYNYLLDPKSRKALSIDLNGAVVIFDEAHNVV 253          
BLAST of mRNA_M-pyrifera_M_contig102307.490.1 vs. uniprot
Match: A0A7S0QM79_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QM79_9CRYP)

HSP 1 Score: 130 bits (327), Expect = 1.640e-34
Identity = 61/122 (50.00%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    1 PKMAVLGSRAQLCIHDDVSKIRGNAQHHACRKLVSKQKCKFHKRVQDYKSNSDFTDAVLDIEELAGLGKSKGVCPYYLTRELQDNAELVLIPYNYLIDPQTRQSLHVDLEGSVLIFDEAHNM 366
            P+++VLGSR QLC+H +VSK+RG AQ+ AC+KLV+ + C +H RV ++K   D    +LDIE+L   G+ + VCPY+L+REL + AE++ +PYNYL D  +R++L      SV IFDEAHN+
Sbjct:   92 PRISVLGSRQQLCVHPEVSKLRGAAQNCACQKLVAAKACLYHSRVMEHKYERDIAGGLLDIEDLCKHGQQQKVCPYFLSRELANEAEVIFMPYNYLTDTASRRTLGTLWHNSVAIFDEAHNL 213          
BLAST of mRNA_M-pyrifera_M_contig102307.490.1 vs. uniprot
Match: V4RZ01_CITCL (Uncharacterized protein n=11 Tax=Citrus TaxID=2706 RepID=V4RZ01_CITCL)

HSP 1 Score: 135 bits (340), Expect = 1.890e-34
Identity = 67/126 (53.17%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    1 PKMAVLGSRAQLCIHDDVSKIRGNAQHHACRKLVSK---QKCKFHKRVQDY-KSNSDFTDAVLDIEELAGLGKSKGVCPYYLTRELQDNAELVLIPYNYLIDPQTRQSLHVDLEGSVLIFDEAHNM 366
            PKM +LGSR QLCIH +VS +RG+AQ++ACR L  K   ++C  H RV DY K+N    D  +DIE+L  +G++ G CPY++TRELQ   ++V  PYNYLIDP  R+ L V+ + S+LIFDEAHN+
Sbjct:  121 PKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGQTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNL 246          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102307.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A453EZX4_AEGTS4.100e-3751.20Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S2X2K7_9CHLO1.480e-3657.26Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
UPI001B7E4DB31.720e-3554.47regulator of telomere elongation helicase 1 homolo... [more]
A0A6P8HMK1_ACTTE4.030e-3550.41Regulator of telomere elongation helicase 1 homolo... [more]
A0A2I4DXZ7_JUGRE5.490e-3554.47regulator of telomere elongation helicase 1 homolo... [more]
A0A835IFC1_9MAGN7.540e-3553.66Helicase ATP-binding domain-containing protein n=1... [more]
A0A067EJ33_CITSI1.240e-3453.17Uncharacterized protein n=2 Tax=Citrus TaxID=2706 ... [more]
UPI000D3045CB1.540e-3445.97regulator of telomere elongation helicase 1-like n... [more]
A0A7S0QM79_9CRYP1.640e-3450.00Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
V4RZ01_CITCL1.890e-3453.17Uncharacterized protein n=11 Tax=Citrus TaxID=2706... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102307contigM-pyrifera_M_contig102307:131..615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score132.1
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2711.XP_006465546.1
Preferred nameRTEL1
KEGG koko:K11136
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000723,GO:0000725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006282,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009555,GO:0009892,GO:0009987,GO:0010569,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0022622,GO:0031323,GO:0031324,GO:0032200,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0034645,GO:0036297,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045005,GO:0045910,GO:0045934,GO:0046483,GO:0048229,GO:0048364,GO:0048519,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070716,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0099402,GO:1901360,GO:1901576,GO:2000779,GO:2001020
EggNOG free text desc.Regulator of telomere elongation helicase
EggNOG OGs37HFH@33090,3GEVA@35493,COG1199@1,KOG1132@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Exons2
Model size369
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102307.490.1prot_M-pyrifera_M_contig102307.490.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102307 131..609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.2870593-CDS-M-pyrifera_M_contig102307:130..3601622815525.2870593-CDS-M-pyrifera_M_contig102307:130..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102307 131..360 -
1692277449.0600908-CDS-M-pyrifera_M_contig102307:130..3601692277449.0600908-CDS-M-pyrifera_M_contig102307:130..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102307 131..360 -
1622815525.3008595-CDS-M-pyrifera_M_contig102307:476..6091622815525.3008595-CDS-M-pyrifera_M_contig102307:476..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102307 477..609 -
1692277449.070073-CDS-M-pyrifera_M_contig102307:476..6091692277449.070073-CDS-M-pyrifera_M_contig102307:476..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102307 477..609 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.3198073-UTR-M-pyrifera_M_contig102307:609..6151622815525.3198073-UTR-M-pyrifera_M_contig102307:609..615Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102307 610..615 -
1692277449.0785294-UTR-M-pyrifera_M_contig102307:609..6151692277449.0785294-UTR-M-pyrifera_M_contig102307:609..615Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102307 610..615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102307.490.1

>prot_M-pyrifera_M_contig102307.490.1 ID=prot_M-pyrifera_M_contig102307.490.1|Name=mRNA_M-pyrifera_M_contig102307.490.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MAVLGSRAQLCIHDDVSKIRGNAQHHACRKLVSKQKCKFHKRVQDYKSNS
DFTDAVLDIEELAGLGKSKGVCPYYLTRELQDNAELVLIPYNYLIDPQTR
QSLHVDLEGSVLIFDEAHNMV
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mRNA from alignment at M-pyrifera_M_contig102307:131..615-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102307.490.1 ID=mRNA_M-pyrifera_M_contig102307.490.1|Name=mRNA_M-pyrifera_M_contig102307.490.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=485bp|location=Sequence derived from alignment at M-pyrifera_M_contig102307:131..615- (Macrocystis pyrifera P11B4 male)
CCCAAGATGGCGGTGCTTGGCTCTCGTGCGCAGCTGTGCATTCATGATGA CGTCTCAAAGATCCGTGGCAATGCCCAGCACCATGCCTGCCGCAAGCTTG TCTCCAAGCAGAAGTGCAAGTTCCACAAGCGAGTCCAAGGTTCTCTCTCT CTCTCTCTCTATATATATATATCTCCCCCTCTCGGCTCCCTCCCTCCCTG GCTCCTCCTCCCATGCACCAAAATGCACGTGACGCGAGAGCTGACGAGGC CGGAGACTACAAGAGCAACTCGGACTTTACGGATGCCGTGCTGGACATCG AGGAGCTCGCAGGCCTGGGCAAGTCGAAGGGCGTGTGTCCCTACTACCTC ACGCGTGAGCTGCAGGACAACGCAGAGCTAGTGCTGATACCCTACAACTA CCTCATCGACCCGCAGACCCGCCAGTCGCTGCATGTCGACCTGGAGGGCT CGGTGCTCATCTTCGATGAGGCGCACAACATGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102307:131..615-

>mRNA_M-pyrifera_M_contig102307.490.1 ID=mRNA_M-pyrifera_M_contig102307.490.1|Name=mRNA_M-pyrifera_M_contig102307.490.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig102307:131..615- (Macrocystis pyrifera P11B4 male)
ATGGCGGTGCTTGGCTCTCGTGCGCAGCTGTGCATTCATGATGACGTCTC
AAAGATCCGTGGCAATGCCCAGCACCATGCCTGCCGCAAGCTTGTCTCCA
AGCAGAAGTGCAAGTTCCACAAGCGAGTCCAAGATGGCGGTGCTTGGCTC
TCGTGCGCAGCTGTGCATTCATGATGACGTCTCAAAGATCCGTGGCAATG
CCCAGCACCATGCCTGCCGCAAGCTTGTCTCCAAGCAGAAGTGCAAGTTC
CACAAGCGAGTCCAAGACTACAAGAGCAACTCGGACTTTACGGATGCCGT
GCTGGACATCGAGGAGCTCGCAGGCCTGGGCAAGTCGAAGGGCGTGTGTC
CCTACTACCTCACGCGTGAGCTGCAGGACAACGCAGAGCTAGTGCTGATA
CCCTACAACTACCTCATCGACCCGCAGACCCGCCAGTCGCTGCATGTCGA
CCTGGAGGGCTCGGTGCTCATCTTCGATGAGGCGCACAACATGGTGACTA
CAAGAGCAACTCGGACTTTACGGATGCCGTGCTGGACATCGAGGAGCTCG
CAGGCCTGGGCAAGTCGAAGGGCGTGTGTCCCTACTACCTCACGCGTGAG
CTGCAGGACAACGCAGAGCTAGTGCTGATACCCTACAACTACCTCATCGA
CCCGCAGACCCGCCAGTCGCTGCATGTCGACCTGGAGGGCTCGGTGCTCA
TCTTCGATGAGGCGCACAACATGGTG
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