mRNA_M-pyrifera_M_contig102306.489.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102306.489.1
Unique NamemRNA_M-pyrifera_M_contig102306.489.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102306.489.1 vs. uniprot
Match: A0A6P6FUG1_ZIZJJ (protein DEK-like n=4 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6FUG1_ZIZJJ)

HSP 1 Score: 62.0 bits (149), Expect = 9.510e-9
Identity = 40/122 (32.79%), Postives = 68/122 (55.74%), Query Frame = 1
Query:    1 SVTRGGRVRKQVNKF-AGGVPTSKAE--WSVVAGKGSELSTLPNVVVRVKLESPASRPVQLLHSLLYSRRAKKLSVKPNILSFSGFPWVGSDEEEAEMDKVQAKANGWKLAEMKTVMDMLEV 357
            ++ R  R RK V ++ A   P S A    S+  G+G++L  +PNV  ++    P    +QLLH++L+ ++AK  S+K NI  FSG+ WV  +E+E +  KV+ K +     ++    D+L +
Sbjct:  129 AIERPARERKLVERYSAPSTPRSSASKALSIEKGRGTQLKDIPNVAFKLAKRKPDDN-LQLLHTILFGKKAKAHSLKRNIGQFSGYVWV-ENEQEKQRAKVKEKLDKCIKEKLMDFCDVLNI 248          
BLAST of mRNA_M-pyrifera_M_contig102306.489.1 vs. uniprot
Match: A0A2R6QG85_ACTCC (Protein DEK like n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QG85_ACTCC)

HSP 1 Score: 60.8 bits (146), Expect = 2.390e-8
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 1
Query:   19 RVRKQVNKFAG---GVPTSKAEWSVVAGKGSELSTLPNVVVRVKLESPASRPVQLLHSLLYSRRAKKLSVKPNILSFSGFPWVGSDEEEAEMDKVQAKANGWKLAEMKTVMDMLEV 357
            R RK V +++    G   SK  +S+  G+G++L  +PNV  ++    P    +Q+LH+LLY +RAK  S+K NI  FSG+ W+  + EE +  K++ K +     ++    D+L +
Sbjct:  104 RERKTVERYSAPSTGRSASKG-FSIEKGRGAQLKDIPNVAFKLSKRKPDDN-LQILHTLLYGKRAKPHSLKRNIGQFSGYVWI--ENEEKQRAKMREKIDKCVKEKLLDYCDILNI 215          
BLAST of mRNA_M-pyrifera_M_contig102306.489.1 vs. uniprot
Match: A0A0K9R0E8_SPIOL (DEK C-terminal domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9R0E8_SPIOL)

HSP 1 Score: 60.8 bits (146), Expect = 2.400e-8
Identity = 38/122 (31.15%), Postives = 64/122 (52.46%), Query Frame = 1
Query:    4 VTRGGRVRKQVNKFAGGVPTSKAEW----SVVAGKGSELSTLPNVVVRVKLESPASRPVQLLHSLLYSRRAKKLSVKPNILSFSGFPWVGSDEEEAEMDKVQAKANGWKLAEMKTVMDMLEV 357
            V R  R RK V +++   P S++      S+  G G+ L  +PNV  ++    P    +QLLH++LY ++AK  ++K +I  FSGF W   D EE +  K++ K +     ++    D+L +
Sbjct:  136 VERPTRERKAVERYSIASPASRSSGGKSLSIAKGSGTVLKEIPNVAYKLSKRKPDDN-LQLLHTILYGKKAKVHNLKKDIDQFSGFVWT--DNEEKQRGKIKEKLDKCVKEKLMDFCDVLNI 254          
BLAST of mRNA_M-pyrifera_M_contig102306.489.1 vs. uniprot
Match: A0A498I4N1_MALDO (DEK C-terminal domain-containing protein n=11 Tax=Maleae TaxID=721813 RepID=A0A498I4N1_MALDO)

HSP 1 Score: 60.8 bits (146), Expect = 2.410e-8
Identity = 38/123 (30.89%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    4 VTRGGRVRKQVNKFAG---GVPTSKAEWSVVAGKGSELSTLPNVVVRVKLESPASRPVQLLHSLLYSRRAKKLSVKPNILSFSGFPWVGSDEEEAEMDKVQAKANGWKLAEMKTVMDMLEVCV 363
            + R  R RK V +++    G  +     S+  G+G+EL  +PNV  ++  +  A   +QLLH++L+ ++AK  S+K NI  FSG+ WV  +E+E +  +V+ K +     ++    D+L + V
Sbjct:  132 IERPTRERKLVERYSAPDSGRSSGTKALSIEKGRGTELKNIPNVAFKMS-KRKADDNLQLLHTILFGKKAKAHSLKKNISQFSGYVWV-ENEQEKQRARVKEKIDKCVKEKLMDFCDLLNIPV 252          
BLAST of mRNA_M-pyrifera_M_contig102306.489.1 vs. uniprot
Match: A0A2R6PDG5_ACTCC (Protein DEK like n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6PDG5_ACTCC)

HSP 1 Score: 60.5 bits (145), Expect = 3.260e-8
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 1
Query:   19 RVRKQVNKFAG---GVPTSKAEWSVVAGKGSELSTLPNVVVRVKLESPASRPVQLLHSLLYSRRAKKLSVKPNILSFSGFPWVGSDEEEAEMDKVQAKANGWKLAEMKTVMDMLEV 357
            R RK V +++    G   SK  +S+  G+G++L  +PNV  ++    P    +Q+LH+LLY +RAK  S+K NI  FSG+ W+  + EE +  K++ K +     ++    D+L +
Sbjct:  103 RERKTVERYSAPSTGRSASKG-FSIEKGQGTQLKDIPNVAFKLSKRKPDDN-LQILHTLLYGKRAKPHSLKRNIGQFSGYVWI--ENEEKQRAKMREKLDKCVKEKLLDFCDVLNI 214          
BLAST of mRNA_M-pyrifera_M_contig102306.489.1 vs. uniprot
Match: A0A540NCV1_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NCV1_MALBA)

HSP 1 Score: 60.1 bits (144), Expect = 4.360e-8
Identity = 37/118 (31.36%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   19 RVRKQVNKFAG---GVPTSKAEWSVVAGKGSELSTLPNVVVRVKLESPASRPVQLLHSLLYSRRAKKLSVKPNILSFSGFPWVGSDEEEAEMDKVQAKANGWKLAEMKTVMDMLEVCV 363
            R RK V +++    G  +    +S+  G G+EL  +PNV  ++  +  A   +QLLH++L+ ++AK  S+K NI  FSG+ WV  +E+E    +V+ K +     ++    D+L + V
Sbjct:  135 RERKLVERYSAPESGRSSGTKSFSIEKGHGTELKNIPNVAFKMS-KRKADDNLQLLHTILFGKKAKPHSLKKNISQFSGYVWV-ENEQEKHRARVKEKIDKCVKEKLMDFCDLLNIPV 250          
BLAST of mRNA_M-pyrifera_M_contig102306.489.1 vs. uniprot
Match: A0A1Q3CNE4_CEPFO (DEK_C domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CNE4_CEPFO)

HSP 1 Score: 60.1 bits (144), Expect = 4.480e-8
Identity = 40/116 (34.48%), Postives = 65/116 (56.03%), Query Frame = 1
Query:   19 RVRKQVNKF-AGGVPTSKAE--WSVVAGKGSELSTLPNVVVRVKLESPASRPVQLLHSLLYSRRAKKLSVKPNILSFSGFPWVGSDEEEAEMDKVQAKANGWKLAEMKTVMDMLEV 357
            R RK V ++ A  V  S A    S+  G+G++L  +PNV  ++    P    +Q+LH++L+ ++AK  S+K NI  FSGF WV  +E+E +  KV+ K +     ++    D+L V
Sbjct:  122 RERKVVERYSAPSVARSSATKPLSIEKGRGTQLKDIPNVAFKLSKRKPNDN-LQILHTILFGKKAKAHSLKRNIGQFSGFVWV-ENEQEKQKAKVREKLDKCVKEKLMEFCDVLNV 235          
BLAST of mRNA_M-pyrifera_M_contig102306.489.1 vs. uniprot
Match: A0A7J7CA49_TRIWF (ABC transporter F family member 4 isoform X1 n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CA49_TRIWF)

HSP 1 Score: 59.7 bits (143), Expect = 6.080e-8
Identity = 36/116 (31.03%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   19 RVRKQVNKFAG---GVPTSKAEWSVVAGKGSELSTLPNVVVRVKLESPASRPVQLLHSLLYSRRAKKLSVKPNILSFSGFPWVGSDEEEAEMDKVQAKANGWKLAEMKTVMDMLEV 357
            R RK V +++    G  +S    S+  G+G++L  +PNV  ++    P    +Q+LH++L+ ++AK   +K NI  FSG+ WV  DE+E +  KV+ K +     ++    D+L +
Sbjct:  130 RERKTVERYSAPSLGRSSSSKGLSIEKGRGTQLKDIPNVAFKLSKRKPDDN-LQILHAILFGKKAKAQVLKRNIGQFSGYVWV-VDEQEKQKAKVREKLDKCVKEKLLDFCDVLNI 243          
BLAST of mRNA_M-pyrifera_M_contig102306.489.1 vs. uniprot
Match: A0A8K0GV82_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0GV82_9ROSA)

HSP 1 Score: 59.7 bits (143), Expect = 6.130e-8
Identity = 36/122 (29.51%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    1 SVTRGGRVRKQVNKFAG---GVPTSKAEWSVVAGKGSELSTLPNVVVRVKLESPASRPVQLLHSLLYSRRAKKLSVKPNILSFSGFPWVGSDEEEAEMDKVQAKANGWKLAEMKTVMDMLEV 357
            +V R  R RK V +++    G  ++    S+  G+G++L  +PNV  ++    P    +QLLH++L+ ++AK   +K NI  FSG+ W+  +E+E +  KV+ K +     ++    D+L +
Sbjct:  143 AVERPTRERKVVERYSATSTGRSSASKSLSIEKGRGTQLKDIPNVAFKLAKRKPDDN-LQLLHTVLFGKKAKAHGLKRNIGQFSGYVWI-ENEQEKQRTKVKEKLDKCVKEKLMDFCDVLNI 262          
BLAST of mRNA_M-pyrifera_M_contig102306.489.1 vs. uniprot
Match: A0A200R412_9MAGN (DEK n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R412_9MAGN)

HSP 1 Score: 59.3 bits (142), Expect = 8.300e-8
Identity = 36/123 (29.27%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    4 VTRGGRVRKQVNKFAGGVPTSKAE-----WSVVAGKGSELSTLPNVVVRVKLESPASRPVQLLHSLLYSRRAKKLSVKPNILSFSGFPWVGSDEEEAEMDKVQAKANGWKLAEMKTVMDMLEV 357
            + R  R RK V +++   P+S+        S+  G+G++L  +PNV  ++    P    +Q+LH++L+ ++AK  S+K NI  FSGF WV  + EE +  +++ K +     ++    D+L++
Sbjct:  112 IERPARERKTVERYS--APSSEKASTPKALSIEKGRGTQLKDIPNVAFKLSKRKPDEN-LQMLHTILFGKKAKVQSLKRNINQFSGFVWV--ENEEKQRVRIKEKLDKCVKEKLMDFCDILDI 229          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102306.489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P6FUG1_ZIZJJ9.510e-932.79protein DEK-like n=4 Tax=Ziziphus jujuba TaxID=326... [more]
A0A2R6QG85_ACTCC2.390e-832.76Protein DEK like n=1 Tax=Actinidia chinensis var. ... [more]
A0A0K9R0E8_SPIOL2.400e-831.15DEK C-terminal domain-containing protein n=2 Tax=S... [more]
A0A498I4N1_MALDO2.410e-830.89DEK C-terminal domain-containing protein n=11 Tax=... [more]
A0A2R6PDG5_ACTCC3.260e-832.76Protein DEK like n=2 Tax=Actinidia TaxID=3624 RepI... [more]
A0A540NCV1_MALBA4.360e-831.36Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]
A0A1Q3CNE4_CEPFO4.480e-834.48DEK_C domain-containing protein n=1 Tax=Cephalotus... [more]
A0A7J7CA49_TRIWF6.080e-831.03ABC transporter F family member 4 isoform X1 n=2 T... [more]
A0A8K0GV82_9ROSA6.130e-829.51Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A200R412_9MAGN8.300e-829.27DEK n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102306contigM-pyrifera_M_contig102306:48..474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue4.4e-08
Seed eggNOG ortholog3711.Bra026415.1-P
KEGG koko:K17046
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BEST Arabidopsis thaliana protein match is
EggNOG OGs37M46@33090,3G7BT@35493,3HYDC@3699,KOG2266@1,KOG2266@2759
COG Functional cat.B
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.2297785-CDS-M-pyrifera_M_contig102306:47..1821622815525.2297785-CDS-M-pyrifera_M_contig102306:47..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102306 48..182 +
1692277449.0361366-CDS-M-pyrifera_M_contig102306:47..1821692277449.0361366-CDS-M-pyrifera_M_contig102306:47..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102306 48..182 +
1622815525.2432716-CDS-M-pyrifera_M_contig102306:246..4741622815525.2432716-CDS-M-pyrifera_M_contig102306:246..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102306 247..474 +
1692277449.0478604-CDS-M-pyrifera_M_contig102306:246..4741692277449.0478604-CDS-M-pyrifera_M_contig102306:246..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102306 247..474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102306.489.1prot_M-pyrifera_M_contig102306.489.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102306 48..474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102306.489.1

>prot_M-pyrifera_M_contig102306.489.1 ID=prot_M-pyrifera_M_contig102306.489.1|Name=mRNA_M-pyrifera_M_contig102306.489.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
SVTRGGRVRKQVNKFAGGVPTSKAEWSVVAGKGSELSTLPNVVVRVKLES
PASRPVQLLHSLLYSRRAKKLSVKPNILSFSGFPWVGSDEEEAEMDKVQA
KANGWKLAEMKTVMDMLEVCV
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mRNA from alignment at M-pyrifera_M_contig102306:48..474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102306.489.1 ID=mRNA_M-pyrifera_M_contig102306.489.1|Name=mRNA_M-pyrifera_M_contig102306.489.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=427bp|location=Sequence derived from alignment at M-pyrifera_M_contig102306:48..474+ (Macrocystis pyrifera P11B4 male)
TCGGTGACGAGGGGCGGACGAGTGAGGAAACAGGTGAACAAGTTCGCTGG TGGTGTGCCAACGTCCAAGGCCGAGTGGAGCGTGGTGGCGGGGAAAGGAT CAGAGTTGTCGACTCTTCCGAACGTGGTCGTGAGGGTGCGTGCTCCTGGG TGTGGTCTGCGAGTTGCGTGATGCTGACGGTGTGTGTTTGGCGATGCAGG TGAAGCTGGAGTCTCCTGCGTCGCGTCCGGTGCAGCTGCTGCACAGTCTG CTGTACAGCCGCCGCGCAAAGAAGTTGAGCGTGAAGCCCAACATTCTGTC CTTCTCCGGCTTCCCGTGGGTCGGGAGTGATGAGGAGGAGGCGGAGATGG ACAAGGTGCAGGCCAAGGCGAACGGGTGGAAGTTGGCGGAGATGAAGACG GTTATGGACATGCTTGAGGTGTGTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102306:48..474+

>mRNA_M-pyrifera_M_contig102306.489.1 ID=mRNA_M-pyrifera_M_contig102306.489.1|Name=mRNA_M-pyrifera_M_contig102306.489.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig102306:48..474+ (Macrocystis pyrifera P11B4 male)
TCGGTGACGAGGGGCGGACGAGTGAGGAAACAGGTGAACAAGTTCGCTGG
TGGTGTGCCAACGTCCAAGGCCGAGTGGAGCGTGGTGGCGGGGAAAGGAT
CAGAGTTGTCGACTCTTCCGAACGTGGTCGTGAGGTCGGTGACGAGGGGC
GGACGAGTGAGGAAACAGGTGAACAAGTTCGCTGGTGGTGTGCCAACGTC
CAAGGCCGAGTGGAGCGTGGTGGCGGGGAAAGGATCAGAGTTGTCGACTC
TTCCGAACGTGGTCGTGAGGGTGAAGCTGGAGTCTCCTGCGTCGCGTCCG
GTGCAGCTGCTGCACAGTCTGCTGTACAGCCGCCGCGCAAAGAAGTTGAG
CGTGAAGCCCAACATTCTGTCCTTCTCCGGCTTCCCGTGGGTCGGGAGTG
ATGAGGAGGAGGCGGAGATGGACAAGGTGCAGGCCAAGGCGAACGGGTGG
AAGTTGGCGGAGATGAAGACGGTTATGGACATGCTTGAGGTGTGTGTGGT
GAAGCTGGAGTCTCCTGCGTCGCGTCCGGTGCAGCTGCTGCACAGTCTGC
TGTACAGCCGCCGCGCAAAGAAGTTGAGCGTGAAGCCCAACATTCTGTCC
TTCTCCGGCTTCCCGTGGGTCGGGAGTGATGAGGAGGAGGCGGAGATGGA
CAAGGTGCAGGCCAAGGCGAACGGGTGGAAGTTGGCGGAGATGAAGACGG
TTATGGACATGCTTGAGGTGTGTGTG
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