mRNA_M-pyrifera_M_contig102300.487.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102300.487.1
Unique NamemRNA_M-pyrifera_M_contig102300.487.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102300.487.1 vs. uniprot
Match: A0A3D5DCK3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCK3_9GAMM)

HSP 1 Score: 403 bits (1035), Expect = 4.090e-139
Identity = 179/209 (85.65%), Postives = 195/209 (93.30%), Query Frame = 1
Query:    4 MQPGHILYEVQESWHPPAVTDRITRGPLNFVEVWKTAQKMTDKPVKFGSICATCLPMMLWNEYYPDDESMVMDIAAALNEEYRALSDAGCPIIQIEEPVHHFNCNMEPPCSDKDLEFYTAAFNRQVEGVDSEIWAHTCWGNPNQQSFYWDRPSYERPLPYFLEMNCDVLMLECGSNGARDIEMLGKYKTDKKSGIGVVDHTRTTVESPE 630
            MQPGHILYEVQESW PP VTD+ITRG L+FVEVWKTAQKMTD+PVKFGSICATC+PMMLWNE+YP+D +M+MDIA ALNEEYR LSDAGCPIIQIEEPVHHFNCN EPPCSDKDL+FYT AFNRQV GV SE+WAHTCWGNPNQQSFYW+RPSYERPL YFLEMNCDVLM+ECGSN ARD+++L K+KTDKK GIGVVDHTRTTVESPE
Sbjct:  107 MQPGHILYEVQESWTPPVVTDKITRGSLDFVEVWKTAQKMTDRPVKFGSICATCIPMMLWNEHYPNDHAMIMDIAIALNEEYRGLSDAGCPIIQIEEPVHHFNCNTEPPCSDKDLQFYTEAFNRQVAGVQSEVWAHTCWGNPNQQSFYWERPSYERPLEYFLEMNCDVLMMECGSNQARDVKLLAKHKTDKKIGIGVVDHTRTTVESPE 315          
BLAST of mRNA_M-pyrifera_M_contig102300.487.1 vs. uniprot
Match: A0A7Y3M953_9DELT (Cobalamin-independent methionine synthase II family protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3M953_9DELT)

HSP 1 Score: 324 bits (831), Expect = 4.100e-108
Identity = 146/210 (69.52%), Postives = 170/210 (80.95%), Query Frame = 1
Query:    1 DMQPGHILYEVQESWHPPAVTDRITRGPLNFVEVWKTAQKMTDKPVKFGSICATCLPMMLWNEYYPDDESMVMDIAAALNEEYRALSDAGCPIIQIEEPVHHFNCNMEPPCSDKDLEFYTAAFNRQVEGVDSEIWAHTCWGNPNQQSFYWDRPSYERPLPYFLEMNCDVLMLECGSNGARDIEMLGKYKTDKKSGIGVVDHTRTTVESPE 630
            DM PG ILYEVQE++HPPAVT  I+RGPL+F   WKTAQ+MT +PVKFGSI A+CLPMMLWNE+Y  D  +++ +A ALNEE R L+DAGCP+IQ+EEP HHF C   PP +DKDLEFYT AFNR+V GV++EIWAHTCWGNPNQQSFYW+RPSYER LPY L ++ DVLMLE  SN  RD+ +L  Y TDKK  IGVVDHTRTTVE PE
Sbjct:  106 DMAPGDILYEVQEAYHPPAVTGPISRGPLHFAAAWKTAQRMTPRPVKFGSISASCLPMMLWNEHYASDRDLILALADALNEELRELADAGCPVIQVEEPPHHFACAATPPATDKDLEFYTEAFNREVAGVNTEIWAHTCWGNPNQQSFYWERPSYERSLPYLLALDADVLMLEGASNHGRDLALLKHYPTDKKISIGVVDHTRTTVERPE 315          
BLAST of mRNA_M-pyrifera_M_contig102300.487.1 vs. uniprot
Match: A0A7J9WE22_9ACTN (Meth_synt_2 domain-containing protein n=1 Tax=Nitriliruptorales bacterium TaxID=2497630 RepID=A0A7J9WE22_9ACTN)

HSP 1 Score: 303 bits (775), Expect = 4.920e-101
Identity = 129/208 (62.02%), Postives = 163/208 (78.37%), Query Frame = 1
Query:    4 MQPGHILYEVQESWHPPAVTDRITRGPLNFVEVWKTAQKMTDKPVKFGSICATCLPMMLWNEYYPDDESMVMDIAAALNEEYRALSDAGCPIIQIEEPVHHFNCNMEPPCSDKDLEFYTAAFNRQVEGVDSEIWAHTCWGNPNQQSFYWDRPSYERPLPYFLEMNCDVLMLECGSNGARDIEMLGKYKTDKKSGIGVVDHTRTTVESP 627
            ++PGHILYEVQE++ PP+V  +++RGPL+F  +WK AQ+   KPVKFG+I A CLPMMLWNE+Y  D  + +D+AA +NEE R L+ AGCP+IQIEEP  HF C    P ++KDLEF T  FNR+V+GV++EIWAHTCWGNPNQQSFYWD+PSYE+ LPY L++N DVL  EC S+  +D+ + GKY+TDKK  IGVV HT TTVESP
Sbjct:    6 LRPGHILYEVQEAYQPPSVVQQLSRGPLHFTPIWKVAQRQASKPVKFGTISAACLPMMLWNEHYSSDRDLTLDVAAVMNEELRELAAAGCPVIQIEEPPQHFACYATQPATEKDLEFLTDVFNREVDGVETEIWAHTCWGNPNQQSFYWDKPSYEKALPYLLQLNADVLTFECASSNGQDLPLFGKYETDKKIAIGVVTHTVTTVESP 213          
BLAST of mRNA_M-pyrifera_M_contig102300.487.1 vs. uniprot
Match: A0A7J9W2S9_9PSEU (Meth_synt_2 domain-containing protein n=1 Tax=Pseudonocardiaceae bacterium TaxID=1873463 RepID=A0A7J9W2S9_9PSEU)

HSP 1 Score: 296 bits (759), Expect = 3.520e-97
Identity = 125/209 (59.81%), Postives = 163/209 (77.99%), Query Frame = 1
Query:    4 MQPGHILYEVQESWHPPAVTDRITRGPLNFVEVWKTAQKMTDKPVKFGSICATCLPMMLWNEYYPDDESMVMDIAAALNEEYRALSDAGCPIIQIEEPVHHFNCNMEPPCSDKDLEFYTAAFNRQVEGVDSEIWAHTCWGNPNQQSFYWDRPSYERPLPYFLEMNCDVLMLECGSNGARDIEMLGKYKTDKKSGIGVVDHTRTTVESPE 630
            ++PGHIL+EVQE++  P+V  +++RGPL+F  +WK AQ+   KPVK G+I + CLPMMLWNE+YP D  + +D+AA +NEE + L+ AGCP+IQIEEP  HF C    P ++KDLEF T  FNR+V+GV++EIWAHTCWGNPNQQSFYWD+PSYE+ LPY L++N DVL  EC S+  +D+ + GKY+TDKK  IGVV HT TTVESP+
Sbjct:  108 LRPGHILHEVQEAYQAPSVVQQLSRGPLHFTPIWKVAQRQASKPVKLGTISSACLPMMLWNEHYPSDRELTLDVAAIMNEELKELAAAGCPVIQIEEPPQHFACYASQPATEKDLEFLTDVFNREVDGVETEIWAHTCWGNPNQQSFYWDKPSYEKALPYLLQLNADVLTFECASSDGQDLPLFGKYETDKKIAIGVVTHTVTTVESPD 316          
BLAST of mRNA_M-pyrifera_M_contig102300.487.1 vs. uniprot
Match: A0A7V3ULM8_9BACT (Meth_synt_2 domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3ULM8_9BACT)

HSP 1 Score: 290 bits (743), Expect = 1.080e-94
Identity = 125/208 (60.10%), Postives = 159/208 (76.44%), Query Frame = 1
Query:    7 QPGHILYEVQESWHPPAVTDRITRGPLNFVEVWKTAQKMTDKPVKFGSICATCLPMMLWNEYYPDDESMVMDIAAALNEEYRALSDAGCPIIQIEEPVHHFNCNMEPPCSDKDLEFYTAAFNRQVEGVDSEIWAHTCWGNPNQQSFYWDRPSYERPLPYFLEMNCDVLMLECGSNGARDIEMLGKYKTDKKSGIGVVDHTRTTVESPE 630
            +PGHIL+EVQE++ PPAVT ++TRGPL +  +WK AQ++T KPVKFG+I A CLP MLWN+YYP  + +++ +A  +NEE + L+  GCP+IQ+EEP HH     +P  +DKDLEF T  FN+QVEGVD+EIWAHTCWGNPNQQS +W+RPSYER LP+ L +N DV+  EC S G +D+ + GKYKTDKK  IGVV HT T VE PE
Sbjct:  109 RPGHILWEVQEAYQPPAVTGKVTRGPLQYAALWKVAQRLTAKPVKFGTISADCLPSMLWNQYYPTRKDLILALAQVMNEELKELAAEGCPLIQLEEPPHHMAAQ-DPETTDKDLEFLTETFNKQVEGVDAEIWAHTCWGNPNQQSVFWERPSYERALPHLLRLNADVITFECASTGGKDLHLFGKYKTDKKIAIGVVSHTNTVVEPPE 315          
BLAST of mRNA_M-pyrifera_M_contig102300.487.1 vs. uniprot
Match: A0A1Q7WQP8_9PROT (Meth_synt_2 domain-containing protein n=4 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7WQP8_9PROT)

HSP 1 Score: 278 bits (710), Expect = 9.930e-90
Identity = 118/209 (56.46%), Postives = 161/209 (77.03%), Query Frame = 1
Query:    4 MQPGHILYEVQESWHPPAVTDRITRGPLNFVEVWKTAQKMTDKPVKFGSICATCLPMMLWNEYYPDDESMVMDIAAALNEEYRALSDAGCPIIQIEEPVHHFNCNMEPPCSDKDLEFYTAAFNRQVEGVDSEIWAHTCWGNPNQQSFYWDRPSYERPLPYFLEMNCDVLMLECGSNGARDIEMLGKYKTDKKSGIGVVDHTRTTVESPE 630
            ++PG IL+EVQE++ P  VTD+++RGPL +  +W+ AQ+++DKPVKFG+ICA  L  MLW+E+Y DD+++V+D+   +N E+R L+ AGCP+IQ+EEP HH    + P C+DKDLEF T AFNRQ++GV++E+W HTCWGNPNQQ  YW+ PSYER LP+ L++ CDV+  EC S+  RD+ + GKYKTDKK GIGVV+H  T VE  E
Sbjct:  108 LKPGKILWEVQEAYQPGVVTDKLSRGPLEYTAIWQIAQRLSDKPVKFGAICAPALVSMLWDEHYHDDKALVLDLCDIMNAEFRELAAAGCPVIQVEEPRHHGLTTL-PDCNDKDLEFQTEAFNRQLDGVEAEVWVHTCWGNPNQQRVYWEVPSYERALPHLLQLKCDVITFECASSDGRDLPLFGKYKTDKKIGIGVVNHCNTVVEPAE 315          
BLAST of mRNA_M-pyrifera_M_contig102300.487.1 vs. uniprot
Match: A0A7V3F739_9BACT (Meth_synt_2 domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3F739_9BACT)

HSP 1 Score: 277 bits (708), Expect = 1.710e-89
Identity = 121/210 (57.62%), Postives = 152/210 (72.38%), Query Frame = 1
Query:    1 DMQPGHILYEVQESWHPPAVTDRITRGPLNFVEVWKTAQKMTDKPVKFGSICATCLPMMLWNEYYPDDESMVMDIAAALNEEYRALSDAGCPIIQIEEPVHHFNCNMEPPCSDKDLEFYTAAFNRQVEGVDSEIWAHTCWGNPNQQSFYWDRPSYERPLPYFLEMNCDVLMLECGSNGARDIEMLGKYKTDKKSGIGVVDHTRTTVESPE 630
            +++PGHIL+EVQE++ P  V +R++RGPL F  +WK AQ++TD+PVKFG+ICA  L  MLWNEYY DD  ++ D+    N E R L+ AGCP+IQ+EEP HH      P C+D +LEF T AFNRQ+ GVD+EIW HTCWGNPNQQ  YW+ PSYER LPY L++N DV+  EC S   RD+ +  KY TDKK GIGVV+H  T VE PE
Sbjct:  107 NLRPGHILWEVQEAYQPAVVQERLSRGPLEFTALWKVAQRLTDRPVKFGTICAPALASMLWNEYYRDDRELIYDLCDIFNAELRELAAAGCPLIQVEEPPHHGRTT-RPDCTDAELEFLTEAFNRQLVGVDAEIWVHTCWGNPNQQRVYWEVPSYERALPYLLQLNADVITFECTSTNGRDLPLFAKYPTDKKIGIGVVNHCNTVVEPPE 315          
BLAST of mRNA_M-pyrifera_M_contig102300.487.1 vs. uniprot
Match: UPI00131C299C (cobalamin-independent methionine synthase II family protein n=1 Tax=Acidisphaera sp. S103 TaxID=1747223 RepID=UPI00131C299C)

HSP 1 Score: 276 bits (707), Expect = 2.280e-89
Identity = 118/210 (56.19%), Postives = 159/210 (75.71%), Query Frame = 1
Query:    1 DMQPGHILYEVQESWHPPAVTDRITRGPLNFVEVWKTAQKMTDKPVKFGSICATCLPMMLWNEYYPDDESMVMDIAAALNEEYRALSDAGCPIIQIEEPVHHFNCNMEPPCSDKDLEFYTAAFNRQVEGVDSEIWAHTCWGNPNQQSFYWDRPSYERPLPYFLEMNCDVLMLECGSNGARDIEMLGKYKTDKKSGIGVVDHTRTTVESPE 630
            D++PG IL+EVQE++ P  V+ ++TRGP  +  +W+ AQ++TD+PVKFG+ICA  L  MLWNE+Y DD++M++D+   +N E R L+ AGCP+IQ+EEP HH   ++ P C+D DLEF T AFNRQ+ GVD+EIWAHTCWGNPNQQ  YW+ PSYER +P+ L++N DV+  EC S+  +D+ + GKY TDKK GIGVV+H  T VE PE
Sbjct:  107 DLRPGKILWEVQEAYQPSIVSGKLTRGPWEYTALWQVAQRLTDRPVKFGAICAPALASMLWNEFYVDDKAMILDLCDIMNAELRELAAAGCPLIQVEEPPHHGR-SLRPDCTDADLEFLTEAFNRQLAGVDAEIWAHTCWGNPNQQRVYWEVPSYERAMPHLLQLNADVITFECASSDGKDLHLFGKYGTDKKIGIGVVNHCNTVVEPPE 315          
BLAST of mRNA_M-pyrifera_M_contig102300.487.1 vs. uniprot
Match: A0A537R6D5_9PROT (Cobalamin-independent methionine synthase II family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537R6D5_9PROT)

HSP 1 Score: 273 bits (699), Expect = 9.880e-89
Identity = 118/210 (56.19%), Postives = 155/210 (73.81%), Query Frame = 1
Query:    1 DMQPGHILYEVQESWHPPAVTDRITRGPLNFVEVWKTAQKMTDKPVKFGSICATCLPMMLWNEYYPDDESMVMDIAAALNEEYRALSDAGCPIIQIEEPVHHFNCNMEPPCSDKDLEFYTAAFNRQVEGVDSEIWAHTCWGNPNQQSFYWDRPSYERPLPYFLEMNCDVLMLECGSNGARDIEMLGKYKTDKKSGIGVVDHTRTTVESPE 630
            D++PG IL+EVQE++ P  V +++TRGPL +  +W+ AQ+ +D+PVKFG+ICA  L  MLWNE+Y DD++MV+D+   +N E R L+ AGCP+IQ+EEP HH      P C+D +LEF T AFNRQ+ GVD+EIW HTCWGNPNQQ  YW+ PSYER LPY L++ CDV+  EC SN  +D+ +  K+KTDKK GIGVV+H  T VE  E
Sbjct:   61 DIRPGKILWEVQEAYQPAIVKEKLTRGPLEYAALWQIAQRFSDRPVKFGAICAPALASMLWNEHYADDKAMVLDLCDIMNAELRELAAAGCPVIQVEEPRHH-GLTTRPDCTDAELEFQTEAFNRQLAGVDAEIWVHTCWGNPNQQRVYWEVPSYERALPYLLQLECDVITFECASNDGKDLPLFAKHKTDKKIGIGVVNHCNTVVEPAE 269          
BLAST of mRNA_M-pyrifera_M_contig102300.487.1 vs. uniprot
Match: W4LM79_9BACT (Meth_synt_2 domain-containing protein n=1 Tax=Candidatus Entotheonella factor TaxID=1429438 RepID=W4LM79_9BACT)

HSP 1 Score: 271 bits (694), Expect = 2.170e-87
Identity = 116/210 (55.24%), Postives = 153/210 (72.86%), Query Frame = 1
Query:    1 DMQPGHILYEVQESWHPPAVTDRITRGPLNFVEVWKTAQKMTDKPVKFGSICATCLPMMLWNEYYPDDESMVMDIAAALNEEYRALSDAGCPIIQIEEPVHHFNCNMEPPCSDKDLEFYTAAFNRQVEGVDSEIWAHTCWGNPNQQSFYWDRPSYERPLPYFLEMNCDVLMLECGSNGARDIEMLGKYKTDKKSGIGVVDHTRTTVESPE 630
            D++PG IL+EVQE++ P  V +R+TRGPL +  +WK AQ+++D+PVKFG+ICA  L  MLWNEYYPDD++++ ++   +N E R L  AGCP+IQ+EEP HH      P C+D DLEF T AFNRQ+ G+ +EIW HTCWGNPNQQ  YW+ PSYER LPY L+++ DV+  EC S+  +D+ +   Y TDKK GIGVV+H  T VE PE
Sbjct:  107 DLRPGRILWEVQEAYQPGVVKERLTRGPLEYTALWKIAQRLSDRPVKFGTICAPALASMLWNEYYPDDQALINELCDIMNAELRELDAAGCPLIQVEEPPHHGRTT-RPDCTDADLEFLTEAFNRQLAGLTAEIWVHTCWGNPNQQRVYWEPPSYERALPYLLQLDADVITFECASSNGKDLPLFANYPTDKKIGIGVVNHCNTVVEPPE 315          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102300.487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DCK3_9GAMM4.090e-13985.65Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7Y3M953_9DELT4.100e-10869.52Cobalamin-independent methionine synthase II famil... [more]
A0A7J9WE22_9ACTN4.920e-10162.02Meth_synt_2 domain-containing protein n=1 Tax=Nitr... [more]
A0A7J9W2S9_9PSEU3.520e-9759.81Meth_synt_2 domain-containing protein n=1 Tax=Pseu... [more]
A0A7V3ULM8_9BACT1.080e-9460.10Meth_synt_2 domain-containing protein n=1 Tax=bact... [more]
A0A1Q7WQP8_9PROT9.930e-9056.46Meth_synt_2 domain-containing protein n=4 Tax=uncl... [more]
A0A7V3F739_9BACT1.710e-8957.62Meth_synt_2 domain-containing protein n=1 Tax=bact... [more]
UPI00131C299C2.280e-8956.19cobalamin-independent methionine synthase II famil... [more]
A0A537R6D5_9PROT9.880e-8956.19Cobalamin-independent methionine synthase II famil... [more]
W4LM79_9BACT2.170e-8755.24Meth_synt_2 domain-containing protein n=1 Tax=Cand... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102300contigM-pyrifera_M_contig102300:4..633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score156.8
Seed ortholog evalue1.1e-35
Seed eggNOG ortholog1254432.SCE1572_16030
KEGG rclassRC00035,RC00113,RC01241
KEGG koko:K00549,ko:K22363
KEGG ReactionR04405,R09365,R11897,R11899
KEGG Pathwayko00270,ko00450,ko00625,ko01100,ko01110,ko01230,map00270,map00450,map00625,map01100,map01110,map01230
KEGG ModuleM00017
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cobalamin-independent synthase, Catalytic domain
EggNOG OGs1MV2Z@1224,2WT46@28221,42NPA@68525,COG0620@1,COG0620@2
EC2.1.1.14,4.4.1.23
COG Functional cat.E
Best tax levelDeltaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size630
Cds size627
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.1327357-CDS-M-pyrifera_M_contig102300:3..6301622815525.1327357-CDS-M-pyrifera_M_contig102300:3..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102300 4..630 -
1692277448.9897385-CDS-M-pyrifera_M_contig102300:3..6301692277448.9897385-CDS-M-pyrifera_M_contig102300:3..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102300 4..630 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.1466994-UTR-M-pyrifera_M_contig102300:630..6331622815525.1466994-UTR-M-pyrifera_M_contig102300:630..633Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102300 631..633 -
1692277449.010752-UTR-M-pyrifera_M_contig102300:630..6331692277449.010752-UTR-M-pyrifera_M_contig102300:630..633Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102300 631..633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102300.487.1prot_M-pyrifera_M_contig102300.487.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102300 4..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102300.487.1

>prot_M-pyrifera_M_contig102300.487.1 ID=prot_M-pyrifera_M_contig102300.487.1|Name=mRNA_M-pyrifera_M_contig102300.487.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=209bp
MQPGHILYEVQESWHPPAVTDRITRGPLNFVEVWKTAQKMTDKPVKFGSI
CATCLPMMLWNEYYPDDESMVMDIAAALNEEYRALSDAGCPIIQIEEPVH
HFNCNMEPPCSDKDLEFYTAAFNRQVEGVDSEIWAHTCWGNPNQQSFYWD
RPSYERPLPYFLEMNCDVLMLECGSNGARDIEMLGKYKTDKKSGIGVVDH
TRTTVESPE
back to top

mRNA from alignment at M-pyrifera_M_contig102300:4..633-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102300.487.1 ID=mRNA_M-pyrifera_M_contig102300.487.1|Name=mRNA_M-pyrifera_M_contig102300.487.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig102300:4..633- (Macrocystis pyrifera P11B4 male)
GATATGCAACCGGGGCACATCCTCTACGAGGTGCAGGAATCGTGGCACCC GCCGGCGGTGACCGACCGGATCACGCGCGGTCCGCTGAATTTCGTCGAAG TCTGGAAGACGGCACAGAAAATGACCGACAAGCCCGTGAAGTTCGGTTCG ATTTGCGCGACCTGCCTGCCGATGATGCTGTGGAACGAGTACTACCCGGA CGATGAGTCGATGGTGATGGATATCGCCGCGGCACTGAATGAAGAATACC GCGCCTTGTCGGACGCCGGCTGCCCGATCATCCAGATCGAGGAGCCGGTG CATCATTTCAACTGCAATATGGAACCGCCGTGTTCGGACAAGGATCTCGA GTTTTACACCGCGGCGTTCAACCGCCAGGTCGAGGGGGTCGATTCCGAAA TTTGGGCGCATACGTGCTGGGGCAATCCGAATCAGCAGAGCTTCTACTGG GACCGGCCGAGTTATGAACGTCCGCTGCCCTATTTCCTCGAGATGAACTG TGACGTGCTCATGCTCGAATGCGGCAGCAACGGCGCGCGTGATATCGAGA TGCTCGGCAAGTACAAGACCGACAAGAAAAGCGGCATCGGCGTGGTCGAT CACACGCGCACGACGGTCGAGTCCCCGGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig102300:4..633-

>mRNA_M-pyrifera_M_contig102300.487.1 ID=mRNA_M-pyrifera_M_contig102300.487.1|Name=mRNA_M-pyrifera_M_contig102300.487.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1254bp|location=Sequence derived from alignment at M-pyrifera_M_contig102300:4..633- (Macrocystis pyrifera P11B4 male)
ATGCAACCGGGGCACATCCTCTACGAGGTGCAGGAATCGTGGCACCCGCC
GGCGGTGACCGACCGGATCACGCGCGGTCCGCTGAATTTCGTCGAAGTCT
GGAAGACGGCACAGAAAATGACCGACAAGCCCGTGAAGTTCGGTTCGATT
TGCGCGACCTGCCTGCCGATGATGCTGTGGAACGAGTACTACCCGGACGA
TGAGTCGATGGTGATGGATATCGCCGCGGCACTGAATGAAGAATACCGCG
CCTTGTCGGACGCCGGCTGCCCGATCATCCAGATCGAGGAGCCGGTGCAT
CATTTCAACTGCAATATGGAACCGCCGTGTTCGGACAAGGATCTCGAGTT
TTACACCGCGGCGTTCAACCGCCAGGTCGAGGGGGTCGATTCCGAAATTT
GGGCGCATACGTGCTGGGGCAATCCGAATCAGCAGAGCTTCTACTGGGAC
CGGCCGAGTTATGAACGTCCGCTGCCCTATTTCCTCGAGATGAACTGTGA
CGTGCTCATGCTCGAATGCGGCAGCAACGGCGCGCGTGATATCGAGATGC
TCGGCAAGTACAAGACCGACAAGAAAAGCGGCATCGGCGTGGTCGATCAC
ACGCGCACGACGGTCGAGTCCCCGGAGATGCAACCGGGGCACATCCTCTA
CGAGGTGCAGGAATCGTGGCACCCGCCGGCGGTGACCGACCGGATCACGC
GCGGTCCGCTGAATTTCGTCGAAGTCTGGAAGACGGCACAGAAAATGACC
GACAAGCCCGTGAAGTTCGGTTCGATTTGCGCGACCTGCCTGCCGATGAT
GCTGTGGAACGAGTACTACCCGGACGATGAGTCGATGGTGATGGATATCG
CCGCGGCACTGAATGAAGAATACCGCGCCTTGTCGGACGCCGGCTGCCCG
ATCATCCAGATCGAGGAGCCGGTGCATCATTTCAACTGCAATATGGAACC
GCCGTGTTCGGACAAGGATCTCGAGTTTTACACCGCGGCGTTCAACCGCC
AGGTCGAGGGGGTCGATTCCGAAATTTGGGCGCATACGTGCTGGGGCAAT
CCGAATCAGCAGAGCTTCTACTGGGACCGGCCGAGTTATGAACGTCCGCT
GCCCTATTTCCTCGAGATGAACTGTGACGTGCTCATGCTCGAATGCGGCA
GCAACGGCGCGCGTGATATCGAGATGCTCGGCAAGTACAAGACCGACAAG
AAAAGCGGCATCGGCGTGGTCGATCACACGCGCACGACGGTCGAGTCCCC
GGAG
back to top