mRNA_M-pyrifera_M_contig102289.486.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102289.486.1
Unique NamemRNA_M-pyrifera_M_contig102289.486.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102289.486.1 vs. uniprot
Match: D8LIX8_ECTSI (Putative Glutathione S-transferase putative Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIX8_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.860e-16
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   16 EPRVTLYRDHAAWCPYCEKVWLQLEEKRIPYRVEKV 123
            EPRVTLYRDHA WCPYCEKVWL LEEKRIPYRV+KV
Sbjct:  143 EPRVTLYRDHAGWCPYCEKVWLLLEEKRIPYRVKKV 178
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BLAST of mRNA_M-pyrifera_M_contig102289.486.1 vs. uniprot
Match: C1FEW2_MICCC (Glutathione s-transferase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FEW2_MICCC)

HSP 1 Score: 78.6 bits (192), Expect = 6.150e-16
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   16 EPRVTLYRDHAAWCPYCEKVWLQLEEKRIPYRVEKV 123
            EPRV  YRDHAAWCPYCEK+W+QLEEKRIPYRVEK+
Sbjct:  120 EPRVLFYRDHAAWCPYCEKIWMQLEEKRIPYRVEKI 155
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BLAST of mRNA_M-pyrifera_M_contig102289.486.1 vs. uniprot
Match: A0A6U2EXV2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2EXV2_HEMAN)

HSP 1 Score: 78.6 bits (192), Expect = 6.150e-16
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:   16 EPRVTLYRDHAAWCPYCEKVWLQLEEKRIPYRVEKV 123
            EPRVTLYRD AAWCPYCEKVWLQLEEKRIPY+VEKV
Sbjct:  150 EPRVTLYRDVAAWCPYCEKVWLQLEEKRIPYKVEKV 185
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BLAST of mRNA_M-pyrifera_M_contig102289.486.1 vs. uniprot
Match: A0A7S0I190_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I190_9CRYP)

HSP 1 Score: 75.9 bits (185), Expect = 1.110e-15
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   16 EPRVTLYRDHAAWCPYCEKVWLQLEEKRIPYRVEKV 123
            EPRV LYRD AAWCPYCEKVWL LEEKR+PYRVEKV
Sbjct:   47 EPRVILYRDKAAWCPYCEKVWLHLEEKRVPYRVEKV 82
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BLAST of mRNA_M-pyrifera_M_contig102289.486.1 vs. uniprot
Match: F0XZY4_AURAN (GST N-terminal domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZY4_AURAN)

HSP 1 Score: 75.9 bits (185), Expect = 1.330e-15
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 LYAEP---EPRVTLYRDHAAWCPYCEKVWLQLEEKRIPYRVEKV 123
            L+ EP   EPRVTLYRD ++WCPYC+KVW+QLEEKRIPYRVE++
Sbjct:   84 LFDEPDGYEPRVTLYRDGSSWCPYCQKVWMQLEEKRIPYRVERI 127
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BLAST of mRNA_M-pyrifera_M_contig102289.486.1 vs. uniprot
Match: A0A1C0UTA8_9CYAN (Glutathione S-transferase n=5 Tax=Limnothrix TaxID=132605 RepID=A0A1C0UTA8_9CYAN)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-15
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 LYAEP--EPRVTLYRDHAAWCPYCEKVWLQLEEKRIPYRVEKV 123
            L+ +P  EPRVTLYRDH AWCPYC+KVWL LEEK+IPYR+EKV
Sbjct:   34 LFGQPDAEPRVTLYRDHHAWCPYCQKVWLWLEEKQIPYRIEKV 76
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BLAST of mRNA_M-pyrifera_M_contig102289.486.1 vs. uniprot
Match: A0A061QI63_9CHLO (Glutathione S-transferase n=4 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QI63_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 1.540e-15
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   16 EPRVTLYRDHAAWCPYCEKVWLQLEEKRIPYRVEKV 123
            EP V LYRDHAAWCPYC+K+WLQLEEKRIPYRVEK+
Sbjct:   71 EPDVVLYRDHAAWCPYCQKIWLQLEEKRIPYRVEKI 106
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BLAST of mRNA_M-pyrifera_M_contig102289.486.1 vs. uniprot
Match: A0A7S0I7Z3_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I7Z3_MICPS)

HSP 1 Score: 77.0 bits (188), Expect = 2.130e-15
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   16 EPRVTLYRDHAAWCPYCEKVWLQLEEKRIPYRVEKV 123
            EPRV  +RDHAAWCPYCEK+W+QLEEKRIPYRVEK+
Sbjct:   75 EPRVLFFRDHAAWCPYCEKIWMQLEEKRIPYRVEKI 110
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BLAST of mRNA_M-pyrifera_M_contig102289.486.1 vs. uniprot
Match: A0A6N2JTN2_9CYAN (Glutathione S-transferase family protein n=4 Tax=unclassified Pseudanabaena TaxID=2593292 RepID=A0A6N2JTN2_9CYAN)

HSP 1 Score: 76.6 bits (187), Expect = 2.560e-15
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    4 YAEPEPRVTLYRDHAAWCPYCEKVWLQLEEKRIPYRVEKV 123
            YAE + RVTLYRDH AWCPYC+K+WL LEEK+IPYR+EKV
Sbjct:   37 YAEADVRVTLYRDHHAWCPYCQKIWLWLEEKQIPYRIEKV 76
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BLAST of mRNA_M-pyrifera_M_contig102289.486.1 vs. uniprot
Match: A0A7S2HEV5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HEV5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.640e-15
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   16 EPRVTLYRDHAAWCPYCEKVWLQLEEKRIPYRVEKV 123
            EPR+  +RDHAAWCPYC KVWL LEEKRIPYRVEKV
Sbjct:  130 EPRIVFFRDHAAWCPYCHKVWLALEEKRIPYRVEKV 165
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102289.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIX8_ECTSI4.860e-1691.67Putative Glutathione S-transferase putative Glutat... [more]
C1FEW2_MICCC6.150e-1686.11Glutathione s-transferase n=1 Tax=Micromonas commo... [more]
A0A6U2EXV2_HEMAN6.150e-1694.44Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0I190_9CRYP1.110e-1588.89Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
F0XZY4_AURAN1.330e-1572.73GST N-terminal domain-containing protein n=1 Tax=A... [more]
A0A1C0UTA8_9CYAN1.340e-1576.74Glutathione S-transferase n=5 Tax=Limnothrix TaxID... [more]
A0A061QI63_9CHLO1.540e-1586.11Glutathione S-transferase n=4 Tax=Tetraselmis sp. ... [more]
A0A7S0I7Z3_MICPS2.130e-1583.33Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A6N2JTN2_9CYAN2.560e-1577.50Glutathione S-transferase family protein n=4 Tax=u... [more]
A0A7S2HEV5_9STRA2.640e-1583.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102289contigM-pyrifera_M_contig102289:135..257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.3
Seed ortholog evalue4.5e-13
Seed eggNOG ortholog296587.XP_002507387.1
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.glutathione S-transferase
EggNOG OGs34IZ3@3041,37RH5@33090,KOG1422@1,KOG1422@2759
EC2.5.1.18
COG Functional cat.P
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.9930918-CDS-M-pyrifera_M_contig102289:134..2571622815524.9930918-CDS-M-pyrifera_M_contig102289:134..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102289 135..257 +
1692277448.9753232-CDS-M-pyrifera_M_contig102289:134..2571692277448.9753232-CDS-M-pyrifera_M_contig102289:134..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102289 135..257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102289.486.1prot_M-pyrifera_M_contig102289.486.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102289 135..257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102289.486.1

>prot_M-pyrifera_M_contig102289.486.1 ID=prot_M-pyrifera_M_contig102289.486.1|Name=mRNA_M-pyrifera_M_contig102289.486.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=41bp
LYAEPEPRVTLYRDHAAWCPYCEKVWLQLEEKRIPYRVEKV
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mRNA from alignment at M-pyrifera_M_contig102289:135..257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102289.486.1 ID=mRNA_M-pyrifera_M_contig102289.486.1|Name=mRNA_M-pyrifera_M_contig102289.486.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=123bp|location=Sequence derived from alignment at M-pyrifera_M_contig102289:135..257+ (Macrocystis pyrifera P11B4 male)
TTGTATGCGGAGCCAGAGCCTCGCGTAACGCTGTACCGAGACCATGCGGC
ATGGTGCCCGTACTGCGAGAAAGTGTGGCTCCAGCTGGAGGAGAAGCGGA
TACCCTACCGCGTCGAAAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102289:135..257+

>mRNA_M-pyrifera_M_contig102289.486.1 ID=mRNA_M-pyrifera_M_contig102289.486.1|Name=mRNA_M-pyrifera_M_contig102289.486.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig102289:135..257+ (Macrocystis pyrifera P11B4 male)
TTGTATGCGGAGCCAGAGCCTCGCGTAACGCTGTACCGAGACCATGCGGC
ATGGTGCCCGTACTGCGAGAAAGTGTGGCTCCAGCTGGAGGAGAAGCGGA
TACCCTACCGCGTCGAAAAGGTGTTGTATGCGGAGCCAGAGCCTCGCGTA
ACGCTGTACCGAGACCATGCGGCATGGTGCCCGTACTGCGAGAAAGTGTG
GCTCCAGCTGGAGGAGAAGCGGATACCCTACCGCGTCGAAAAGGTG
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