mRNA_M-pyrifera_M_contig102268.485.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102268.485.1
Unique NamemRNA_M-pyrifera_M_contig102268.485.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102268.485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102268contigM-pyrifera_M_contig102268:49..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size603
Cds size603
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.9505606-CDS-M-pyrifera_M_contig102268:48..6511622815524.9505606-CDS-M-pyrifera_M_contig102268:48..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102268 49..651 -
1692277448.9634304-CDS-M-pyrifera_M_contig102268:48..6511692277448.9634304-CDS-M-pyrifera_M_contig102268:48..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102268 49..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102268.485.1prot_M-pyrifera_M_contig102268.485.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102268 49..651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102268.485.1

>prot_M-pyrifera_M_contig102268.485.1 ID=prot_M-pyrifera_M_contig102268.485.1|Name=mRNA_M-pyrifera_M_contig102268.485.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=201bp
ETTFSSNVAIQGGAVSVFDNAIVVMSGETKLSRNLAEDGGAMFVQSNSYL
SMGGITTFYQNMAVGVNISVLPRSGGALGVMESTVTLSGNTTFSVNTAEA
LGGVVYGSYYSNTAWDGETTFSSNVAGQGGAAYAQHRSNLSSDGRTTFHG
NFVLGANRSDITPAGGALTMVDSAVTFGGETMFAENQALGSGGAVFVDST
T
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mRNA from alignment at M-pyrifera_M_contig102268:49..651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102268.485.1 ID=mRNA_M-pyrifera_M_contig102268.485.1|Name=mRNA_M-pyrifera_M_contig102268.485.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=603bp|location=Sequence derived from alignment at M-pyrifera_M_contig102268:49..651- (Macrocystis pyrifera P11B4 male)
GAGACGACGTTTTCAAGCAACGTGGCAATACAGGGAGGCGCTGTGTCGGT TTTCGACAACGCGATCGTTGTAATGAGTGGAGAGACAAAGCTCTCAAGAA ATTTAGCAGAGGACGGGGGTGCCATGTTTGTACAATCGAACTCGTACCTC TCCATGGGCGGGATTACCACCTTCTACCAGAACATGGCCGTGGGTGTGAA TATATCCGTTCTTCCCCGATCAGGTGGTGCCCTTGGAGTGATGGAGTCCA CTGTTACGTTGAGCGGTAATACAACATTCTCTGTCAACACCGCCGAAGCC CTAGGGGGTGTTGTGTATGGCTCCTACTACTCAAACACTGCGTGGGACGG GGAGACGACGTTTTCAAGCAACGTGGCCGGACAAGGAGGCGCTGCTTATG CACAACATCGCTCAAACCTCTCCTCAGACGGGAGGACCACCTTTCACGGG AATTTTGTCTTGGGTGCGAACAGATCCGATATCACACCGGCAGGTGGTGC CCTTACCATGGTGGATTCCGCTGTTACGTTCGGCGGGGAGACCATGTTTG CCGAGAACCAAGCCCTGGGGTCTGGTGGTGCTGTTTTCGTGGATAGCACT ACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102268:49..651-

>mRNA_M-pyrifera_M_contig102268.485.1 ID=mRNA_M-pyrifera_M_contig102268.485.1|Name=mRNA_M-pyrifera_M_contig102268.485.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1206bp|location=Sequence derived from alignment at M-pyrifera_M_contig102268:49..651- (Macrocystis pyrifera P11B4 male)
GAGACGACGTTTTCAAGCAACGTGGCAATACAGGGAGGCGCTGTGTCGGT
TTTCGACAACGCGATCGTTGTAATGAGTGGAGAGACAAAGCTCTCAAGAA
ATTTAGCAGAGGACGGGGGTGCCATGTTTGTACAATCGAACTCGTACCTC
TCCATGGGCGGGATTACCACCTTCTACCAGAACATGGCCGTGGGTGTGAA
TATATCCGTTCTTCCCCGATCAGGTGGTGCCCTTGGAGTGATGGAGTCCA
CTGTTACGTTGAGCGGTAATACAACATTCTCTGTCAACACCGCCGAAGCC
CTAGGGGGTGTTGTGTATGGCTCCTACTACTCAAACACTGCGTGGGACGG
GGAGACGACGTTTTCAAGCAACGTGGCCGGACAAGGAGGCGCTGCTTATG
CACAACATCGCTCAAACCTCTCCTCAGACGGGAGGACCACCTTTCACGGG
AATTTTGTCTTGGGTGCGAACAGATCCGATATCACACCGGCAGGTGGTGC
CCTTACCATGGTGGATTCCGCTGTTACGTTCGGCGGGGAGACCATGTTTG
CCGAGAACCAAGCCCTGGGGTCTGGTGGTGCTGTTTTCGTGGATAGCACT
ACCGAGACGACGTTTTCAAGCAACGTGGCAATACAGGGAGGCGCTGTGTC
GGTTTTCGACAACGCGATCGTTGTAATGAGTGGAGAGACAAAGCTCTCAA
GAAATTTAGCAGAGGACGGGGGTGCCATGTTTGTACAATCGAACTCGTAC
CTCTCCATGGGCGGGATTACCACCTTCTACCAGAACATGGCCGTGGGTGT
GAATATATCCGTTCTTCCCCGATCAGGTGGTGCCCTTGGAGTGATGGAGT
CCACTGTTACGTTGAGCGGTAATACAACATTCTCTGTCAACACCGCCGAA
GCCCTAGGGGGTGTTGTGTATGGCTCCTACTACTCAAACACTGCGTGGGA
CGGGGAGACGACGTTTTCAAGCAACGTGGCCGGACAAGGAGGCGCTGCTT
ATGCACAACATCGCTCAAACCTCTCCTCAGACGGGAGGACCACCTTTCAC
GGGAATTTTGTCTTGGGTGCGAACAGATCCGATATCACACCGGCAGGTGG
TGCCCTTACCATGGTGGATTCCGCTGTTACGTTCGGCGGGGAGACCATGT
TTGCCGAGAACCAAGCCCTGGGGTCTGGTGGTGCTGTTTTCGTGGATAGC
ACTACC
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