mRNA_M-pyrifera_M_contig102239.482.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102239.482.1
Unique NamemRNA_M-pyrifera_M_contig102239.482.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102239.482.1 vs. uniprot
Match: A0A8K1FMJ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMJ8_PYTOL)

HSP 1 Score: 68.9 bits (167), Expect = 2.450e-10
Identity = 49/163 (30.06%), Postives = 76/163 (46.63%), Query Frame = 1 
Query:   85 IVVNCAAVARVS----EAKGCEGVNIPSVLILAVKKQPRCILVHFSTDLVYRGGEEGGXXXXXXGGVVLEPITAYGVQKAKADALIHTNLGSRGRVLRCSNIIGPPAPFTS--APKFLDWVKQNAERKVDDAEKRATVWSDEKRCFVHVEDVVEGVLRIVDDD 555
            ++VNC A+A  +    + +  + +N P  L+  ++ +    LVHFSTD VY G              +   +  Y   K   D  + T       VLR +N+IGP APF +   PKF++W+           E   T+WSDE R F++VED+   V  ++  D
Sbjct:   86 VIVNCVAMASPAACERDPERSKTLNEPRHLVEFLRGKG-IRLVHFSTDFVYEGSAPRPQSYYEEDASLRPSMCVYSSSKLSFDQFLMTQSDLDAVVLRIANVIGPRAPFFADQPPKFVEWLYTELFLSPTKQESPVTLWSDEIRSFLYVEDLARVVWSLIASD 247
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BLAST of mRNA_M-pyrifera_M_contig102239.482.1 vs. uniprot
Match: A0A7S1U2N4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2N4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.740e-9
Identity = 50/152 (32.89%), Postives = 67/152 (44.08%), Query Frame = 1 
Query:   85 IVVNCAAVARVSEAKG----CEGVNIPSVLILAVKKQPRC--ILVHFSTDLVYRGGEEGGXXXXXXGGVVLEPITAYGVQKAKADALIHTNLGSRGRVLRCSNIIGPPAPFTSAPKFLDWVKQNAERKVDDAEKRATVWSDEKRCFVHVEDV 522
            +++N AA+  +++ +        VN P  L  A         +LV  STD VY G            G    P+  YG  K   +  +    G  G VLR SNI+GPPAPF+ A KFL W+   A           T+W DE R FV V D+
Sbjct:   75 VIINTAAMTSLADCEKNPDEASAVNAPEHLFAAAAAAAPAPPLLVQLSTDQVYDGAHA-----PYAEGDTAAPVNHYGATKLHCEQRMAA-AGVNGVVLRSSNILGPPAPFSGAGKFLQWL-DGALAAAAQGGDNVTLWDDEYRNFVWVYDI 219
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BLAST of mRNA_M-pyrifera_M_contig102239.482.1 vs. uniprot
Match: UPI001C770C41 (dTDP-4-dehydrorhamnose reductase n=1 Tax=Pseudoclavibacter triregionum TaxID=2820673 RepID=UPI001C770C41)

HSP 1 Score: 61.6 bits (148), Expect = 7.360e-8
Identity = 43/131 (32.82%), Postives = 60/131 (45.80%), Query Frame = 1 
Query:   19 LSYTNLDIEDEEKVEEVVEGADIVVNCAAVARV----SEAKGCEGVNIPSVLILAVK-KQPRCILVHFSTDLVYRGGEEGGXXXXXXGGVVLEPITAYGVQKAKADALIHTNLGSRGRVLRCSNIIGPPAP 396
            LS   LDI D + V   +EGAD+V+NCAA   V    S+  G   VN     +LA    +    LVH+STD V++G                +PI  YG  KA+ +  I    G R  ++R + + G   P
Sbjct:   39 LSRKELDITDADAVRTAIEGADVVINCAAYTNVDGAESDEAGAYRVNAEGPAVLAEACAEAGATLVHYSTDYVFKGDATSPYPEDGP----YDPINVYGASKAEGEKAITAGNGERSYIIRTAWLYGNGGP 165
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BLAST of mRNA_M-pyrifera_M_contig102239.482.1 vs. uniprot
Match: A0A7S1U0Z1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0Z1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.050e-6
Identity = 40/121 (33.06%), Postives = 55/121 (45.45%), Query Frame = 1 
Query:   85 IVVNCAAVARVSEAKG----CEGVNIPSVLILAVKKQPRC--ILVHFSTDLVYRGGEEGGXXXXXXGGVVLEPITAYGVQKAKADALIHTNLGSRGRVLRCSNIIGPPAPFTSAPKFLDWV 429
            +++N AA+  +++ +        VN P  L  A         +LV  STD VY G            G    P+  YG  K   +  +    G  G VLR SNI+GPPAPF+ A KFL W+
Sbjct:   75 VIINTAAMTSLADCEKNPDEASAVNAPEHLFAAAAAAAPAPPLLVQLSTDQVYDGAHA-----PYAEGDTAAPVNHYGATKLHCEQRMAA-AGVNGVVLRSSNILGPPAPFSGAGKFLQWL 189
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102239.482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8K1FMJ8_PYTOL2.450e-1030.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1U2N4_9STRA2.740e-932.89Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI001C770C417.360e-832.82dTDP-4-dehydrorhamnose reductase n=1 Tax=Pseudocla... [more]
A0A7S1U0Z1_9STRA2.050e-633.06Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102239contigM-pyrifera_M_contig102239:12..617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue2.3e-17
Seed eggNOG ortholog67593.Physo141102
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RmlD substrate binding domain
EggNOG OGs3QCGZ@4776,COG0451@1,KOG1430@2759
COG Functional cat.EI
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.8369884-CDS-M-pyrifera_M_contig102239:11..6171622815524.8369884-CDS-M-pyrifera_M_contig102239:11..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102239 12..617 -
1692277448.9331665-CDS-M-pyrifera_M_contig102239:11..6171692277448.9331665-CDS-M-pyrifera_M_contig102239:11..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102239 12..617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102239.482.1prot_M-pyrifera_M_contig102239.482.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102239 12..617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102239.482.1

>prot_M-pyrifera_M_contig102239.482.1 ID=prot_M-pyrifera_M_contig102239.482.1|Name=mRNA_M-pyrifera_M_contig102239.482.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
PPPSPILSYTNLDIEDEEKVEEVVEGADIVVNCAAVARVSEAKGCEGVNI
PSVLILAVKKQPRCILVHFSTDLVYRGGEEGGGEGDGEGGVVLEPITAYG
VQKAKADALIHTNLGSRGRVLRCSNIIGPPAPFTSAPKFLDWVKQNAERK
VDDAEKRATVWSDEKRCFVHVEDVVEGVLRIVDDDECCLVDAIGPELLSR
AE
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mRNA from alignment at M-pyrifera_M_contig102239:12..617-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102239.482.1 ID=mRNA_M-pyrifera_M_contig102239.482.1|Name=mRNA_M-pyrifera_M_contig102239.482.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig102239:12..617- (Macrocystis pyrifera P11B4 male)
CCCCCACCATCTCCTATTCTCTCCTATACCAATCTTGATATTGAAGATGA
AGAAAAAGTGGAAGAGGTTGTGGAAGGTGCTGATATTGTGGTGAATTGTG
CAGCCGTTGCTCGTGTATCAGAGGCCAAAGGTTGCGAAGGAGTAAATATC
CCATCTGTGCTCATTCTTGCTGTCAAGAAGCAGCCAAGGTGTATTCTTGT
GCACTTTAGCACAGATTTAGTGTATCGTGGAGGCGAAGAAGGAGGTGGGG
AAGGAGATGGGGAAGGAGGTGTTGTTTTGGAACCAATAACAGCGTATGGC
GTGCAGAAAGCAAAAGCAGATGCATTGATTCATACTAATCTTGGGAGTAG
AGGACGTGTTCTTCGATGTAGCAACATTATAGGTCCTCCAGCACCATTCA
CATCAGCTCCAAAGTTCCTAGATTGGGTGAAACAAAATGCGGAGCGAAAA
GTTGACGATGCAGAGAAAAGAGCAACAGTGTGGAGTGATGAAAAGCGTTG
TTTTGTGCACGTTGAAGATGTTGTGGAAGGGGTTTTGAGAATTGTGGATG
ATGATGAGTGCTGCTTGGTCGATGCAATCGGTCCAGAGTTGTTGTCAAGA
GCAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102239:12..617-

>mRNA_M-pyrifera_M_contig102239.482.1 ID=mRNA_M-pyrifera_M_contig102239.482.1|Name=mRNA_M-pyrifera_M_contig102239.482.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1212bp|location=Sequence derived from alignment at M-pyrifera_M_contig102239:12..617- (Macrocystis pyrifera P11B4 male)
CCCCCACCATCTCCTATTCTCTCCTATACCAATCTTGATATTGAAGATGA
AGAAAAAGTGGAAGAGGTTGTGGAAGGTGCTGATATTGTGGTGAATTGTG
CAGCCGTTGCTCGTGTATCAGAGGCCAAAGGTTGCGAAGGAGTAAATATC
CCATCTGTGCTCATTCTTGCTGTCAAGAAGCAGCCAAGGTGTATTCTTGT
GCACTTTAGCACAGATTTAGTGTATCGTGGAGGCGAAGAAGGAGGTGGGG
AAGGAGATGGGGAAGGAGGTGTTGTTTTGGAACCAATAACAGCGTATGGC
GTGCAGAAAGCAAAAGCAGATGCATTGATTCATACTAATCTTGGGAGTAG
AGGACGTGTTCTTCGATGTAGCAACATTATAGGTCCTCCAGCACCATTCA
CATCAGCTCCAAAGTTCCTAGATTGGGTGAAACAAAATGCGGAGCGAAAA
GTTGACGATGCAGAGAAAAGAGCAACAGTGTGGAGTGATGAAAAGCGTTG
TTTTGTGCACGTTGAAGATGTTGTGGAAGGGGTTTTGAGAATTGTGGATG
ATGATGAGTGCTGCTTGGTCGATGCAATCGGTCCAGAGTTGTTGTCAAGA
GCAGAGCCCCCACCATCTCCTATTCTCTCCTATACCAATCTTGATATTGA
AGATGAAGAAAAAGTGGAAGAGGTTGTGGAAGGTGCTGATATTGTGGTGA
ATTGTGCAGCCGTTGCTCGTGTATCAGAGGCCAAAGGTTGCGAAGGAGTA
AATATCCCATCTGTGCTCATTCTTGCTGTCAAGAAGCAGCCAAGGTGTAT
TCTTGTGCACTTTAGCACAGATTTAGTGTATCGTGGAGGCGAAGAAGGAG
GTGGGGAAGGAGATGGGGAAGGAGGTGTTGTTTTGGAACCAATAACAGCG
TATGGCGTGCAGAAAGCAAAAGCAGATGCATTGATTCATACTAATCTTGG
GAGTAGAGGACGTGTTCTTCGATGTAGCAACATTATAGGTCCTCCAGCAC
CATTCACATCAGCTCCAAAGTTCCTAGATTGGGTGAAACAAAATGCGGAG
CGAAAAGTTGACGATGCAGAGAAAAGAGCAACAGTGTGGAGTGATGAAAA
GCGTTGTTTTGTGCACGTTGAAGATGTTGTGGAAGGGGTTTTGAGAATTG
TGGATGATGATGAGTGCTGCTTGGTCGATGCAATCGGTCCAGAGTTGTTG
TCAAGAGCAGAG
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