mRNA_M-pyrifera_M_contig102237.481.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102237.481.1
Unique NamemRNA_M-pyrifera_M_contig102237.481.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102237.481.1 vs. uniprot
Match: A0A381S736_9ZZZZ (Dockerin domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381S736_9ZZZZ)

HSP 1 Score: 52.4 bits (124), Expect = 5.430e-6
Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = 1
Query:   22 EALFVSLLHAREPIGMETMAYWVGHLASQAIHGPKEAKEGDDDEKEVPEASLFLASRTVWFVYIANPDGYEEN 240
            E LF +L HAREP+GM  + Y+V  LA +          G D     PE +  +  R +WF+ + NPDGY  N
Sbjct:  161 EVLFTALTHAREPVGMMNLIYFVQLLAEEY---------GTD-----PELTYLVNEREIWFLPVVNPDGYVYN 219          
BLAST of mRNA_M-pyrifera_M_contig102237.481.1 vs. uniprot
Match: A0A7Z9SDV3_9BACT (Peptidase_M14 domain-containing protein n=2 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7Z9SDV3_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 7.370e-6
Identity = 27/73 (36.99%), Postives = 37/73 (50.68%), Query Frame = 1
Query:   22 EALFVSLLHAREPIGMETMAYWVGHLASQAIHGPKEAKEGDDDEKEVPEASLFLASRTVWFVYIANPDGYEEN 240
            E LF +L HAREP+GM  + Y+V  L  +          G D     PE +  +  R +WF+ + NPDGY  N
Sbjct:   60 EVLFTALTHAREPVGMMNLIYFVQLLGEEY---------GSD-----PELTYLVNEREIWFMLVVNPDGYVYN 118          
BLAST of mRNA_M-pyrifera_M_contig102237.481.1 vs. uniprot
Match: A0A485LBG6_9STRA (Aste57867_18621 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBG6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.490e-6
Identity = 27/77 (35.06%), Postives = 37/77 (48.05%), Query Frame = 1
Query:   10 SKTREALFVSLLHAREPIGMETMAYWVGHLASQAIHGPKEAKEGDDDEKEVPEASLFLASRTVWFVYIANPDGYEEN 240
            S   +AL+  L HAREP+ M  + ++V HL    +H             E    +  L SR +WFV + NPDGY  N
Sbjct:  371 SSPPQALYTGLHHAREPMSMMNLVFFVDHLVLGLVH-------------EDAAITQLLFSRQLWFVLVVNPDGYAYN 434          
BLAST of mRNA_M-pyrifera_M_contig102237.481.1 vs. uniprot
Match: A0A383AC08_9ZZZZ (Peptidase_M14 domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383AC08_9ZZZZ)

HSP 1 Score: 51.6 bits (122), Expect = 7.530e-6
Identity = 28/73 (38.36%), Postives = 37/73 (50.68%), Query Frame = 1
Query:   22 EALFVSLLHAREPIGMETMAYWVGHLASQAIHGPKEAKEGDDDEKEVPEASLFLASRTVWFVYIANPDGYEEN 240
            E L+  L HAREPI M  + Y+V +L            EG+D     PEA   +  R +WF+ + NPDGY  N
Sbjct:  169 EILYTGLTHAREPISMMNLFYFVQNLCESY-------SEGND-----PEAVYLVNEREIWFIPVVNPDGYLYN 229          
BLAST of mRNA_M-pyrifera_M_contig102237.481.1 vs. uniprot
Match: T0LH04_9BACT (Dockerin domain-containing protein n=1 Tax=candidate division Zixibacteria bacterium RBG-1 TaxID=1379698 RepID=T0LH04_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 1.390e-5
Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = 1
Query:   22 EALFVSLLHAREPIGMETMAYWVGHLASQAIHGPKEAKEGDDDEKEVPEASLFLASRTVWFVYIANPDGYEEN 240
            E L+  L HAREPI +E + Y++ +L             G D E     A+  + +R +WFV I NPDGYE N
Sbjct:  160 EVLYDGLHHAREPISIEVLLYFMNYLCQNY---------GSDSE-----ATYLVNNRELWFVPIVNPDGYEYN 218          
BLAST of mRNA_M-pyrifera_M_contig102237.481.1 vs. uniprot
Match: A0A6N6SLC3_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Ignavibacteriaceae bacterium TaxID=2651163 RepID=A0A6N6SLC3_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 3.570e-5
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 1
Query:   22 EALFVSLLHAREPIGMETMAYWVGHLASQAIHGPKEAKEGDDDEKEVPEASLFLASRTVWFVYIANPDGYEEN 240
            +ALF  L+HAREPI M T+ Y++ +L     +G              PE +  + +R ++F+ + NPDGYE N
Sbjct:  173 QALFDGLIHAREPISMMTVIYYMYYLCEN--YGTN------------PEVTYLVNNREIFFIPVVNPDGYEYN 231          
BLAST of mRNA_M-pyrifera_M_contig102237.481.1 vs. uniprot
Match: A0A7C7MCG0_9BACT (Peptidase_M14 domain-containing protein (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7C7MCG0_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 4.780e-5
Identity = 27/73 (36.99%), Postives = 39/73 (53.42%), Query Frame = 1
Query:   22 EALFVSLLHAREPIGMETMAYWVGHLASQAIHGPKEAKEGDDDEKEVPEASLFLASRTVWFVYIANPDGYEEN 240
            E L+ +L HAREP+ M  + Y+V  LA +          G+D     PE +  + +R +WFV + NPDGY  N
Sbjct:   66 EVLYTALTHAREPVSMMNLFYFVQLLAEEY---------GND-----PELTYLVNNREMWFVPVINPDGYVYN 124          
BLAST of mRNA_M-pyrifera_M_contig102237.481.1 vs. uniprot
Match: A0A523WMT1_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A523WMT1_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 6.670e-5
Identity = 26/73 (35.62%), Postives = 38/73 (52.05%), Query Frame = 1
Query:   22 EALFVSLLHAREPIGMETMAYWVGHLASQAIHGPKEAKEGDDDEKEVPEASLFLASRTVWFVYIANPDGYEEN 240
            EAL+  L HAREPI ME + Y++ +L +           G D     P+ +  + +R +WF+   NPDGY  N
Sbjct:  162 EALYTGLHHAREPISMENILYFMAYLCNNY---------GSD-----PDVTYLVDNRQLWFIPCLNPDGYLYN 220          
BLAST of mRNA_M-pyrifera_M_contig102237.481.1 vs. uniprot
Match: A0A7Z9N3D6_9BACT (Peptidase_M14 domain-containing protein (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7Z9N3D6_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 8.740e-5
Identity = 27/73 (36.99%), Postives = 36/73 (49.32%), Query Frame = 1
Query:   22 EALFVSLLHAREPIGMETMAYWVGHLASQAIHGPKEAKEGDDDEKEVPEASLFLASRTVWFVYIANPDGYEEN 240
            E L+  L HAREP+GM  + Y+V  L  Q          G D     PE +  +  R +WF+ + NPDGY  N
Sbjct:  161 EVLYTGLTHAREPVGMMNLFYFVQLLCEQY---------GTD-----PEITYLVDHREMWFIPVINPDGYLYN 219          
BLAST of mRNA_M-pyrifera_M_contig102237.481.1 vs. uniprot
Match: A0A1F4Y715_9BACT (Peptidase_M14 domain-containing protein n=1 Tax=candidate division Zixibacteria bacterium RBG_16_48_11 TaxID=1802785 RepID=A0A1F4Y715_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 8.990e-5
Identity = 26/73 (35.62%), Postives = 36/73 (49.32%), Query Frame = 1
Query:   22 EALFVSLLHAREPIGMETMAYWVGHLASQAIHGPKEAKEGDDDEKEVPEASLFLASRTVWFVYIANPDGYEEN 240
            E  + SL HAREP+GME + Y++ +L             G D     P     + +R +WFV + NPDGY  N
Sbjct:  160 EVFYNSLTHAREPMGMEVLLYFMHYLTDYY---------GSD-----PRVDSIVNNRELWFVPVVNPDGYRWN 218          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102237.481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A381S736_9ZZZZ5.430e-638.36Dockerin domain-containing protein n=1 Tax=marine ... [more]
A0A7Z9SDV3_9BACT7.370e-636.99Peptidase_M14 domain-containing protein n=2 Tax=Ca... [more]
A0A485LBG6_9STRA7.490e-635.06Aste57867_18621 protein n=1 Tax=Aphanomyces stella... [more]
A0A383AC08_9ZZZZ7.530e-638.36Peptidase_M14 domain-containing protein (Fragment)... [more]
T0LH04_9BACT1.390e-538.36Dockerin domain-containing protein n=1 Tax=candida... [more]
A0A6N6SLC3_9BACT3.570e-535.62T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7C7MCG0_9BACT4.780e-536.99Peptidase_M14 domain-containing protein (Fragment)... [more]
A0A523WMT1_9BACT6.670e-535.62T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7Z9N3D6_9BACT8.740e-536.99Peptidase_M14 domain-containing protein (Fragment)... [more]
A0A1F4Y715_9BACT8.990e-535.62Peptidase_M14 domain-containing protein n=1 Tax=ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102237contigM-pyrifera_M_contig102237:140..379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.188218-CDS-M-pyrifera_M_contig102237:139..3791622815524.188218-CDS-M-pyrifera_M_contig102237:139..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102237 140..379 +
1692277448.9247057-CDS-M-pyrifera_M_contig102237:139..3791692277448.9247057-CDS-M-pyrifera_M_contig102237:139..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102237 140..379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102237.481.1prot_M-pyrifera_M_contig102237.481.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102237 140..379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102237.481.1

>prot_M-pyrifera_M_contig102237.481.1 ID=prot_M-pyrifera_M_contig102237.481.1|Name=mRNA_M-pyrifera_M_contig102237.481.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
HGASKTREALFVSLLHAREPIGMETMAYWVGHLASQAIHGPKEAKEGDDD
EKEVPEASLFLASRTVWFVYIANPDGYEEN
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mRNA from alignment at M-pyrifera_M_contig102237:140..379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102237.481.1 ID=mRNA_M-pyrifera_M_contig102237.481.1|Name=mRNA_M-pyrifera_M_contig102237.481.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig102237:140..379+ (Macrocystis pyrifera P11B4 male)
CATGGAGCTTCGAAAACCCGAGAAGCGCTTTTTGTGTCTCTTTTGCATGC GCGTGAACCAATCGGAATGGAAACAATGGCTTATTGGGTTGGTCACTTGG CGTCACAGGCAATTCATGGACCGAAAGAAGCAAAAGAAGGAGATGATGAT GAAAAAGAGGTTCCAGAGGCTTCTCTTTTCCTTGCATCGCGGACAGTGTG GTTTGTATACATCGCTAACCCTGATGGCTACGAGGAGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102237:140..379+

>mRNA_M-pyrifera_M_contig102237.481.1 ID=mRNA_M-pyrifera_M_contig102237.481.1|Name=mRNA_M-pyrifera_M_contig102237.481.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig102237:140..379+ (Macrocystis pyrifera P11B4 male)
CATGGAGCTTCGAAAACCCGAGAAGCGCTTTTTGTGTCTCTTTTGCATGC
GCGTGAACCAATCGGAATGGAAACAATGGCTTATTGGGTTGGTCACTTGG
CGTCACAGGCAATTCATGGACCGAAAGAAGCAAAAGAAGGAGATGATGAT
GAAAAAGAGGTTCCAGAGGCTTCTCTTTTCCTTGCATCGCGGACAGTGTG
GTTTGTATACATCGCTAACCCTGATGGCTACGAGGAGAATCATGGAGCTT
CGAAAACCCGAGAAGCGCTTTTTGTGTCTCTTTTGCATGCGCGTGAACCA
ATCGGAATGGAAACAATGGCTTATTGGGTTGGTCACTTGGCGTCACAGGC
AATTCATGGACCGAAAGAAGCAAAAGAAGGAGATGATGATGAAAAAGAGG
TTCCAGAGGCTTCTCTTTTCCTTGCATCGCGGACAGTGTGGTTTGTATAC
ATCGCTAACCCTGATGGCTACGAGGAGAAT
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